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Fatullaev EI, Shavykin OV, Neelov IM. Molecular Dynamics of Lysine Dendrigrafts in Methanol-Water Mixtures. Int J Mol Sci 2023; 24:ijms24043063. [PMID: 36834474 PMCID: PMC9963150 DOI: 10.3390/ijms24043063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Revised: 01/22/2023] [Accepted: 01/27/2023] [Indexed: 02/08/2023] Open
Abstract
The molecular dynamics method was used to study the structure and properties of dendrigrafts of the first and second generations in methanol-water mixtures with various volume fractions of methanol. At a small volume fraction of methanol, the size and other properties of both dendrigrafts are very similar to those in pure water. A decrease in the dielectric constant of the mixed solvent with an increase in the methanol fraction leads to the penetration of counterions into the dendrigrafts and a reduction of the effective charge. This leads to a gradual collapse of dendrigrafts: a decrease in their size, and an increase in the internal density and the number of intramolecular hydrogen bonds inside them. At the same time, the number of solvent molecules inside the dendrigraft and the number of hydrogen bonds between the dendrigraft and the solvent decrease. At small fractions of methanol in the mixture, the dominant secondary structure in both dendrigrafts is an elongated polyproline II (PPII) helix. At intermediate volume fractions of methanol, the proportion of the PPII helix decreases, while the proportion of another elongated β-sheet secondary structure gradually increases. However, at a high fraction of methanol, the proportion of compact α-helix conformations begins to increase, while the proportion of both elongated conformations decreases.
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Affiliation(s)
- Emil I. Fatullaev
- School of Computer Technologies and Control, St. Petersburg National Research University of Information Technologies, Mechanics and Optics (ITMO University), Kronverkskiy pr. 49, 197101 St. Petersburg, Russia
| | - Oleg V. Shavykin
- School of Computer Technologies and Control, St. Petersburg National Research University of Information Technologies, Mechanics and Optics (ITMO University), Kronverkskiy pr. 49, 197101 St. Petersburg, Russia
- Physics Department, Lomonosov Moscow State University, Leninskie Gory 1-2, 119991 Moscow, Russia
- Department of Mathematics, Tver State University, Sadoviy per. 35, 170102 Tver, Russia
| | - Igor M. Neelov
- School of Computer Technologies and Control, St. Petersburg National Research University of Information Technologies, Mechanics and Optics (ITMO University), Kronverkskiy pr. 49, 197101 St. Petersburg, Russia
- Institute of Macromolecular Compounds of the Russian Academy of Sciences, 199004 St. Petersburg, Russia
- Correspondence:
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Enzyme-Responsive Nanoparticles and Coatings Made from Alginate/Peptide Ciprofloxacin Conjugates as Drug Release System. Antibiotics (Basel) 2021; 10:antibiotics10060653. [PMID: 34072352 PMCID: PMC8226786 DOI: 10.3390/antibiotics10060653] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 05/10/2021] [Accepted: 05/26/2021] [Indexed: 01/11/2023] Open
Abstract
Infection-controlled release of antibacterial agents is of great importance, particularly for the control of peri-implant infections in the postoperative phase. Polymers containing antibiotics bound via enzymatically cleavable linkers could provide access to drug release systems that could accomplish this. Dispersions of nanogels were prepared by ionotropic gelation of alginate with poly-l-lysine, which was conjugated with ciprofloxacin as model drug via a copper-free 1,3-dipolar cycloaddition (click reaction). The nanogels are stable in dispersion and form films which are stable in aqueous environments. However, both the nanogels and the layers are degraded in the presence of an enzyme and the ciprofloxacin is released. The efficacy of the released drug against Staphylococcus aureus is negatively affected by the residues of the linker. Both the acyl modification of the amine nitrogen in ciprofloxacin and the sterically very demanding linker group with three annellated rings could be responsible for this. However the basic feasibility of the principle for enzyme-triggered release of drugs was successfully demonstrated.
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Thompson M, Scholz C. Highly Branched Polymers Based on Poly(amino acid)s for Biomedical Application. NANOMATERIALS (BASEL, SWITZERLAND) 2021; 11:1119. [PMID: 33925961 PMCID: PMC8145254 DOI: 10.3390/nano11051119] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/18/2021] [Revised: 04/14/2021] [Accepted: 04/20/2021] [Indexed: 01/16/2023]
Abstract
Polymers consisting of amino acid building blocks continue to receive consideration for biomedical applications. Since poly(amino acid)s are built from natural amino acids, the same building blocks proteins are made of, they are biocompatible, biodegradable and their degradation products are metabolizable. Some amino acids display a unique asymmetrical AB2 structure, which facilitates their ability to form branched structures. This review compares the three forms of highly branched polymeric structures: structurally highly organized dendrimers, dendrigrafts and the less organized, but readily synthesizable hyperbranched polymers. Their syntheses are reviewed and compared, methods of synthesis modulations are considered and variations on their traditional syntheses are shown. The potential use of highly branched polymers in the realm of biomedical applications is discussed, specifically their applications as delivery vehicles for genes and drugs and their use as antiviral compounds. Of the twenty essential amino acids, L-lysine, L-glutamic acid, and L-aspartic acid are asymmetrical AB2 molecules, but the bulk of the research into highly branched poly(amino acid)s has focused on the polycationic poly(L-lysine) with a lesser extent on poly(L-glutamic acid). Hence, the majority of potential applications lies in delivery systems for nucleic acids and this review examines and compares how these three types of highly branched polymers function as non-viral gene delivery vectors. When considering drug delivery systems, the small size of these highly branched polymers is advantageous for the delivery of inhalable drug. Even though highly branched polymers, in particular dendrimers, have been studied for more than 40 years for the delivery of genes and drugs, they have not translated in large scale into the clinic except for promising antiviral applications that have been commercialized.
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Affiliation(s)
| | - Carmen Scholz
- Department of Chemistry, University of Alabama in Huntsville, 301 Sparkman Dr., Huntsville, AL 35899, USA;
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Canonico B, Carloni R, Sanz del Olmo N, Papa S, Nasoni MG, Fattori A, Cangiotti M, de la Mata FJ, Ottaviani MF, García-Gallego S. Fine-Tuning the Interaction and Therapeutic Effect of Cu(II) Carbosilane Metallodendrimers in Cancer Cells: An In Vitro Electron Paramagnetic Resonance Study. Mol Pharm 2020; 17:2691-2702. [DOI: 10.1021/acs.molpharmaceut.0c00396] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Barbara Canonico
- Department of Biomolecular Science (DiSB), University of Urbino “Carlo Bo”, Urbino 61029, Italy
| | - Riccardo Carloni
- Department of Pure and Applied Sciences, University of Urbino “Carlo Bo”, Urbino 61029, Italy
| | - Natalia Sanz del Olmo
- Department of Organic and Inorganic Chemistry, and Research Institute in Chemistry “Andrés M. del Río” (IQAR), University of Alcalá, Madrid 28871, Spain
| | - Stefano Papa
- Department of Biomolecular Science (DiSB), University of Urbino “Carlo Bo”, Urbino 61029, Italy
| | - Maria Gemma Nasoni
- Department of Biomolecular Science (DiSB), University of Urbino “Carlo Bo”, Urbino 61029, Italy
| | - Alberto Fattori
- Department of Pure and Applied Sciences, University of Urbino “Carlo Bo”, Urbino 61029, Italy
| | - Michela Cangiotti
- Department of Pure and Applied Sciences, University of Urbino “Carlo Bo”, Urbino 61029, Italy
| | - F. Javier de la Mata
- Department of Organic and Inorganic Chemistry, and Research Institute in Chemistry “Andrés M. del Río” (IQAR), University of Alcalá, Madrid 28871, Spain
- Networking Research Center on Bioengineering, Biomaterials and Nanomedicine (CIBER-BBN), Madrid 28029, Spain
- Institute Ramón y Cajal for Health Research (IRYCIS), Madrid 28034, Spain
| | | | - Sandra García-Gallego
- Department of Organic and Inorganic Chemistry, and Research Institute in Chemistry “Andrés M. del Río” (IQAR), University of Alcalá, Madrid 28871, Spain
- Networking Research Center on Bioengineering, Biomaterials and Nanomedicine (CIBER-BBN), Madrid 28029, Spain
- Institute Ramón y Cajal for Health Research (IRYCIS), Madrid 28034, Spain
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Agazzi ML, Herrera SE, Cortez ML, Marmisollé WA, Azzaroni O. Self-assembled peptide dendrigraft supraparticles with potential application in pH/enzyme-triggered multistage drug release. Colloids Surf B Biointerfaces 2020; 190:110895. [DOI: 10.1016/j.colsurfb.2020.110895] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2019] [Revised: 01/29/2020] [Accepted: 02/21/2020] [Indexed: 01/24/2023]
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Gineste S, Di Cola E, Amouroux B, Till U, Marty JD, Mingotaud AF, Mingotaud C, Violleau F, Berti D, Parigi G, Luchinat C, Balor S, Sztucki M, Lonetti B. Mechanistic Insights into Polyion Complex Associations. Macromolecules 2018. [DOI: 10.1021/acs.macromol.7b02391] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Stéphane Gineste
- Laboratoire
des IMRCP, Université de Toulouse, CNRS UMR 5623, Université Toulouse III - Paul Sabatier, 118 route de Narbonne, Cedex 9 F-31062, Toulouse, France
| | - Emanuela Di Cola
- BioSoftMatter
Laboratorio Dip CBBM LITA, Universita di Milano, Via F lli Cervi
93 MI IT, 20090 Segrate, Italy
| | - Baptiste Amouroux
- Laboratoire
des IMRCP, Université de Toulouse, CNRS UMR 5623, Université Toulouse III - Paul Sabatier, 118 route de Narbonne, Cedex 9 F-31062, Toulouse, France
| | - Ugo Till
- Laboratoire
des IMRCP, Université de Toulouse, CNRS UMR 5623, Université Toulouse III - Paul Sabatier, 118 route de Narbonne, Cedex 9 F-31062, Toulouse, France
- Département
Sciences Agronomiques et Agroalimentaires, Université de Toulouse, Institut National Polytechnique de Toulouse - Ecole d’Ingénieurs de Purpan, 75 voie du TOEC, BP 57611, Cedex 03 F-31076 Toulouse, France
| | - Jean-Daniel Marty
- Laboratoire
des IMRCP, Université de Toulouse, CNRS UMR 5623, Université Toulouse III - Paul Sabatier, 118 route de Narbonne, Cedex 9 F-31062, Toulouse, France
| | - Anne-Françoise Mingotaud
- Laboratoire
des IMRCP, Université de Toulouse, CNRS UMR 5623, Université Toulouse III - Paul Sabatier, 118 route de Narbonne, Cedex 9 F-31062, Toulouse, France
| | - Christophe Mingotaud
- Laboratoire
des IMRCP, Université de Toulouse, CNRS UMR 5623, Université Toulouse III - Paul Sabatier, 118 route de Narbonne, Cedex 9 F-31062, Toulouse, France
| | - Frédéric Violleau
- Laboratoire
de Chimie Agro-industrielle (LCA), Université de Toulouse, INRA, INPT, INP-EI PURPAN, Toulouse, France
| | - Debora Berti
- Department
of Chemistry “Ugo Schiff”, University of Florence and CSGI, Via della Lastruccia 3, 50019 Sesto Fiorentino Firenze, Italy
| | - Giacomo Parigi
- Department
of Chemistry Ugo Schiff and Magnetic Resonance Center (CERM), University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino Firenze, Italy
| | - Claudio Luchinat
- Department
of Chemistry Ugo Schiff and Magnetic Resonance Center (CERM), University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino Firenze, Italy
| | - Stéphanie Balor
- Plateforme
METi, Centre de Biologie Intégrative (CBI), Université de Toulouse, CNRS, UPS, Toulouse, France
| | - Michael Sztucki
- European Synchrotron
Radiation Facility-71, avenue des Martyrs,
CS 40220, Cedex 9 38043 Grenoble, France
| | - Barbara Lonetti
- Laboratoire
des IMRCP, Université de Toulouse, CNRS UMR 5623, Université Toulouse III - Paul Sabatier, 118 route de Narbonne, Cedex 9 F-31062, Toulouse, France
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Francoia JP, Vial L. Everything You Always Wanted to Know about Poly-l-lysine Dendrigrafts (But Were Afraid to Ask). Chemistry 2018; 24:2806-2814. [PMID: 29034997 DOI: 10.1002/chem.201704147] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2017] [Revised: 10/12/2017] [Indexed: 12/12/2022]
Abstract
Less than a decade ago, dendrigrafts of poly-l-lysine (DGLs) joined the family of polycationic dendritic macromolecules. Resulting from the iterative polycondensation of an N-carboxyanhydride in water, four generations of the dendrigraft can be obtained on a multigram scale and without chromatographic purification. DGLs share features with both dendrimers and hyperbranched polymers, but turned out to have unique biophysical and bioactive properties. The macromolecules-in their native form or functionalized-have been extensively characterized by various analytical and computational methods, and have already found numerous applications in the biomedical field, such as drug and gene delivery, biomaterials, tissue engineering, bioimaging, and biosensing. Despite a growing interest for DGLs, there is still plenty of room for further exciting developments that could result from a better exposure of these macromolecules, which is the ambition of this short review.
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Affiliation(s)
| | - Laurent Vial
- Institut des Biomolécules Max Mousseron, UMR 5247 CNRS-Université de Montpellier-ENSCM, Place Eugène, Bataillon, 34296, Montpellier cedex 5, France.,Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, UMR 5246 CNRS-Université Claude Bernard, Lyon 1-CPE Lyon-INSA, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne cedex, France
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