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Kushnazarova RA, Mirgorodskaya AB, Kuznetsov DM, Vasilieva EA, Amerhanova SK, Voloshina AD, Zakharova LY. Piperidinium surfactants functionalized with carbamate fragment: Aggregation, antimicrobial activity and cytotoxicity. Biochim Biophys Acta Gen Subj 2024; 1868:130562. [PMID: 38218459 DOI: 10.1016/j.bbagen.2024.130562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2023] [Revised: 12/28/2023] [Accepted: 01/09/2024] [Indexed: 01/15/2024]
Abstract
The biomimetic nature of supramolecular systems, the structural similarity of synthetic surfactants to biomolecules (lipids, proteins), provide them with high membranotropy, the ability to overcome biological barriers, and affinity towards biosubstances. Despite rather high toxicity cationic surfactants are of importance as antimicrobial agents, gene nanocarriers and mitochondria targeted ligands. To minimize this limitation, cationic amphiphilic matrix undergoes modification with various functional groups. In this work, new piperidinium cationic surfactants containing one or two carbamate fragments were prepared; their aggregation behavior was systematically studied by tensiometery, spectrophotometry and fluorimetry. The presence of a carbamate fragment leads to a 2-3-fold decrease in critical micelle concentration and to a significant increase in solubilization capacity compared to unsubstituted analogue. Evaluation of the antimicrobial effect showed that all compounds exhibit high bactericidal and fungicidal activity against a wide range of pathogenic microorganisms, including their resistant forms. Importantly, the introducing carbamate moiety allows of decreasing hemolytic activity of cationic surfactants. The data obtained make it possible to recommend carbamate piperidinium surfactants as effective biocompatible and biodegradable nanocontainers for hydrophobic probes with high antimicrobial effect and moderate hemolytic activity.
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Affiliation(s)
- Rushana A Kushnazarova
- Arbuzov Institute of Organic and Physical Chemistry, FRC Kazan Scientific Center of RAS, Arbuzov St., 8, Kazan 420088, Russia
| | - Alla B Mirgorodskaya
- Arbuzov Institute of Organic and Physical Chemistry, FRC Kazan Scientific Center of RAS, Arbuzov St., 8, Kazan 420088, Russia.
| | - Denis M Kuznetsov
- Arbuzov Institute of Organic and Physical Chemistry, FRC Kazan Scientific Center of RAS, Arbuzov St., 8, Kazan 420088, Russia
| | - Elmira A Vasilieva
- Arbuzov Institute of Organic and Physical Chemistry, FRC Kazan Scientific Center of RAS, Arbuzov St., 8, Kazan 420088, Russia
| | - Syumbelya K Amerhanova
- Arbuzov Institute of Organic and Physical Chemistry, FRC Kazan Scientific Center of RAS, Arbuzov St., 8, Kazan 420088, Russia
| | - Alexandra D Voloshina
- Arbuzov Institute of Organic and Physical Chemistry, FRC Kazan Scientific Center of RAS, Arbuzov St., 8, Kazan 420088, Russia
| | - Lucia Ya Zakharova
- Arbuzov Institute of Organic and Physical Chemistry, FRC Kazan Scientific Center of RAS, Arbuzov St., 8, Kazan 420088, Russia
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Mousavifard SM, Ghermezcheshme H, Mirzaalipour A, Mohseni M, de With G, Makki H. PolySMart: a general coarse-grained molecular dynamics polymerization scheme. MATERIALS HORIZONS 2023; 10:2281-2296. [PMID: 37022310 DOI: 10.1039/d3mh00088e] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The development of simulation methods to study the structure and dynamics of a macroscopically sized piece of polymer material is important as such methods can elucidate structure-property relationships. Several methods have been reported to construct initial structures for homo- and co-polymers; however, most of them are only useful for short linear polymers since one needs to pack and equilibrate the far-from-equilibrium initial structures, which is a tedious task for long or hyperbranched polymers and unfeasible for polymer networks. In this method article, we present PolySMart, i.e., an open-source python package, which can effectively produce fully equilibrated homo- and hetero-polymer melts and solutions with no limitation on the polymer topology and size, at a coarse-grained resolution and through a bottom-up approach. This python package is also capable of exploring the polymerization kinetics through its reactive scheme in realistic conditions so that it can model the multiple co-occurring polymerization reactions (with different reaction rates) as well as consecutive polymerizations under stoichiometric and non-stoichiometric conditions. Thus, the equilibrated polymer models are generated through correct polymerization kinetics. A benchmark and verification of the performance of the program for several realistic cases, i.e., for homo-polymers, co-polymers, and crosslinked networks, is given. We further discuss the capability of the program to contribute to the discovery and design of new polymer materials.
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Affiliation(s)
- Seyyed Mohammad Mousavifard
- Department of Polymer and Color Engineering, Amirkabir University of Technology, 424 Hafez Ave., Tehran, Iran
| | - Hassan Ghermezcheshme
- Department of Polymer and Color Engineering, Amirkabir University of Technology, 424 Hafez Ave., Tehran, Iran
| | - Alireza Mirzaalipour
- Department of Polymer and Color Engineering, Amirkabir University of Technology, 424 Hafez Ave., Tehran, Iran
| | - Mohsen Mohseni
- Department of Polymer and Color Engineering, Amirkabir University of Technology, 424 Hafez Ave., Tehran, Iran
| | - Gijsbertus de With
- Laboratory of Physical Chemistry, Department of Chemical Engineering & Chemistry, Eindhoven University of Technology, POB 513, NL-5600 MB Eindhoven, The Netherlands
| | - Hesam Makki
- Department of Chemistry and Materials Innovation Factory, University of Liverpool, Liverpool L69 7ZD, UK.
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Guitton-Spassky T, Junge F, Singh AK, Schade B, Achazi K, Maglione M, Sigrist S, Rashmi R, Haag R. Fluorinated dendritic amphiphiles, their stomatosome aggregates and application in enzyme encapsulation. NANOSCALE 2023; 15:7781-7791. [PMID: 37016756 DOI: 10.1039/d3nr00493g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Enzymes are more selective and efficient than synthetic catalysts but are limited by difficult recycling. This is overcome by immobilisation, namely through encapsulation, with the main drawback of this method being slow diffusion of products and reactants, resulting in effectively lowered enzyme activity. Fluorinated dendritic amphiphiles were reported to self-assemble into regularly perforated bilayer vesicles, so-called "stomatosomes". It was proposed that they could be promising novel reaction vessels due to their increased porosity while retaining larger biomolecules at the same time. Amphiphiles were synthesised and their aggregation was analysed by cryogenic transmission electron microscopy (cryo-TEM) and dynamic light scattering (DLS) in buffered conditions necessary for enzyme encapsulation. Urease and albumin were encapsulated using the thin-film hydration method and investigated by confocal and time-gated stimulated emission depletion microscopy (gSTED). Their release was then used to probe the selective retention of cargo by stomatosomes. Free and encapsulated enzyme activity were compared and their capacity to be reused was evaluated using the Berthelot method. Urease was successfully encapsulated, did not leak out at room temperature, and showed better activity in perforated vesicles than in closed vesicles without perforations. Encapsulated enzyme could be reused with retained activity over 8 cycles using centrifugation, while free enzyme had to be filtrated. These results show that stomatosomes may be used in enzyme immobilisation applications and present advantages over closed vesicles or free enzyme.
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Affiliation(s)
- Tiffany Guitton-Spassky
- Institut für Chemie und Biochemie, Organische Chemie, Freie Universität Berlin, Takustraße 3, Berlin, 14195 Germany.
| | - Florian Junge
- Institut für Chemie und Biochemie, Organische Chemie, Freie Universität Berlin, Takustraße 3, Berlin, 14195 Germany.
| | - Abhishek Kumar Singh
- Institut für Chemie und Biochemie, Organische Chemie, Freie Universität Berlin, Takustraße 3, Berlin, 14195 Germany.
| | - Boris Schade
- Forschungszentrum für Elektronenmikroskopie, Institut für Chemie und Biochemie, Freie Universität Berlin, Fabeckstraße 36a, Berlin, 14195 Germany
| | - Katharina Achazi
- Institut für Chemie und Biochemie, Organische Chemie, Freie Universität Berlin, Takustraße 3, Berlin, 14195 Germany.
| | - Marta Maglione
- Institut für Chemie und Biochemie, Organische Chemie, Freie Universität Berlin, Takustraße 3, Berlin, 14195 Germany.
- Institute for Biology, Freie Universität Berlin, Takustraße 6, Berlin, 14195 Germany
| | - Stephan Sigrist
- Institute for Biology, Freie Universität Berlin, Takustraße 6, Berlin, 14195 Germany
| | - Rashmi Rashmi
- Institut für Chemie und Biochemie, Organische Chemie, Freie Universität Berlin, Takustraße 3, Berlin, 14195 Germany.
| | - Rainer Haag
- Institut für Chemie und Biochemie, Organische Chemie, Freie Universität Berlin, Takustraße 3, Berlin, 14195 Germany.
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Junge F, Lee PW, Kumar Singh A, Wasternack J, Pachnicz MP, Haag R, Schalley CA. Interfaces with Fluorinated Amphiphiles: Superstructures and Microfluidics. Angew Chem Int Ed Engl 2023; 62:e202213866. [PMID: 36412551 DOI: 10.1002/anie.202213866] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 11/14/2022] [Accepted: 11/15/2022] [Indexed: 11/23/2022]
Abstract
This Minireview discusses recent developments in research on the interfacial phenomena of fluorinated amphiphiles, with a focus on applications that exploit the unique and manifold interfacial properties associated with these amphiphiles. Most notably, fluorinated amphiphiles form stable aggregates with often distinctly different morphologies compared to their nonfluorinated counterparts. Consequently, fluorinated surfactants have found wide use in high-performance applications such as microfluidic-assisted screening. Additionally, their fluorine-specific behaviour at solid/liquid interfaces, such as the formation of superhydrophobic coatings after deposition on surfaces, will be discussed. As fluorinated surfactants and perfluorinated materials in general pose potential environmental threats, recent developments in their remediation based on their adsorption onto fluorinated surfaces will be evaluated.
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Affiliation(s)
- Florian Junge
- Institut für Chemie und Biochemie, Freie Universität Berlin, Takustrasse 3, 14195, Berlin, Germany
| | - Pin-Wei Lee
- Institut für Chemie und Biochemie, Freie Universität Berlin, Arnimallee 20, 14195, Berlin, Germany
| | - Abhishek Kumar Singh
- Institut für Chemie und Biochemie, Freie Universität Berlin, Takustrasse 3, 14195, Berlin, Germany
| | - Janos Wasternack
- Institut für Chemie und Biochemie, Freie Universität Berlin, Arnimallee 20, 14195, Berlin, Germany
| | - Michał P Pachnicz
- Institut für Chemie und Biochemie, Freie Universität Berlin, Arnimallee 20, 14195, Berlin, Germany
| | - Rainer Haag
- Institut für Chemie und Biochemie, Freie Universität Berlin, Takustrasse 3, 14195, Berlin, Germany
| | - Christoph A Schalley
- Institut für Chemie und Biochemie, Freie Universität Berlin, Arnimallee 20, 14195, Berlin, Germany
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Singh AK, Schade B, Rosati M, Rashmi R, Dichiarante V, Cavallo G, Metrangolo P, Haag R. Synthesis and Linker-Controlled Self-Assembly of Dendritic Amphiphiles with Branched Fluorinated Tails. Macromol Biosci 2022; 22:e2200108. [PMID: 35612569 DOI: 10.1002/mabi.202200108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Revised: 04/26/2022] [Indexed: 12/25/2022]
Abstract
Amphiphiles containing fluorinated segments tend to aggregate in the aqueous solution into structure of lower curvature than their hydrocarbon analogs due to their larger diameter. A benefit of supramolecular structures incorporating fluorine moieties is their high electron density, which can be viewed in cryo-TEM with better contrast than their hydrogenated forms. A modular approach has been developed for the synthesis of a new family of nonionic branched amphiphiles consisting of oligoglycerol units (G2) as the hydrophilic part and a branched fluorinated (F27) hydrophobic part. The design of this hydrophobic moiety allows to achieve a higher fluorine density than the previously used straight-chain perfluoroalkanes. Two different chemical approaches, amide, and triazole, are used to link the hydrophilic and hydrophobic segments. In addition, the aggregation behavior is investigated by dynamic light scattering (DLS) and cryo-TEM. The measurements prove the formation of multivesicular (MVVs) and multilamellar (MLVs) vesicles as well as smaller unilamellar vesicles. Further, the cell viability test proves the low cell toxicity of these nanoarchitectures for potential biomedical applications.
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Affiliation(s)
- Abhishek Kumar Singh
- Institut für Chemie und Biochemie, Organische Chemie, Freie Universität Berlin, Takustraße 3, Berlin, 14195, Germany
| | - Boris Schade
- Forschungszentrum für Elektronenmikroskopie, Institut für Chemie und Biochemie, Freie Universität Berlin, Fabeckstraße 36a, Berlin, 14195, Germany
| | - Marta Rosati
- Department of Chemistry, Materials and Chemical Engineering "Giulio Natta", Politecnico di Milano, Via L. Mancinelli 7, Milan, 20131, Italy
| | - Rashmi Rashmi
- Institut für Chemie und Biochemie, Organische Chemie, Freie Universität Berlin, Takustraße 3, Berlin, 14195, Germany
| | - Valentina Dichiarante
- Department of Chemistry, Materials and Chemical Engineering "Giulio Natta", Politecnico di Milano, Via L. Mancinelli 7, Milan, 20131, Italy
| | - Gabriella Cavallo
- Department of Chemistry, Materials and Chemical Engineering "Giulio Natta", Politecnico di Milano, Via L. Mancinelli 7, Milan, 20131, Italy
| | - Pierangelo Metrangolo
- Department of Chemistry, Materials and Chemical Engineering "Giulio Natta", Politecnico di Milano, Via L. Mancinelli 7, Milan, 20131, Italy
| | - Rainer Haag
- Institut für Chemie und Biochemie, Organische Chemie, Freie Universität Berlin, Takustraße 3, Berlin, 14195, Germany
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