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Runge EA, Mansor M, Kappler A, Duda JP. Microbial biosignatures in ancient deep-sea hydrothermal sulfides. GEOBIOLOGY 2023; 21:355-377. [PMID: 36524457 DOI: 10.1111/gbi.12539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Revised: 11/03/2022] [Accepted: 12/03/2022] [Indexed: 06/17/2023]
Abstract
Deep-sea hydrothermal systems provide ideal conditions for prebiotic reactions and ancient metabolic pathways and, therefore, might have played a pivotal role in the emergence of life. To understand this role better, it is paramount to examine fundamental interactions between hydrothermal processes, non-living matter, and microbial life in deep time. However, the distribution and diversity of microbial communities in ancient deep-sea hydrothermal systems are still poorly constrained, so evolutionary, and ecological relationships remain unclear. One important reason is an insufficient understanding of the formation of diagnostic microbial biosignatures in such settings and their preservation through geological time. This contribution centers around microbial biosignatures in Precambrian deep-sea hydrothermal sulfide deposits. Intending to provide a valuable resource for scientists from across the natural sciences whose research is concerned with the origins of life, we first introduce different types of biosignatures that can be preserved over geological timescales (rock fabrics and textures, microfossils, mineral precipitates, carbonaceous matter, trace metal, and isotope geochemical signatures). We then review selected reports of biosignatures from Precambrian deep-sea hydrothermal sulfide deposits and discuss their geobiological significance. Our survey highlights that Precambrian hydrothermal sulfide deposits potentially encode valuable information on environmental conditions, the presence and nature of microbial life, and the complex interactions between fluids, micro-organisms, and minerals. It further emphasizes that the geobiological interpretation of these records is challenging and requires the concerted application of analytical and experimental methods from various fields, including geology, mineralogy, geochemistry, and microbiology. Well-orchestrated multidisciplinary studies allow us to understand the formation and preservation of microbial biosignatures in deep-sea hydrothermal sulfide systems and thus help unravel the fundamental geobiology of ancient settings. This, in turn, is critical for reconstructing life's emergence and early evolution on Earth and the search for life elsewhere in the universe.
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Affiliation(s)
- Eric Alexander Runge
- Sedimentology and Organic Geochemistry, Department of Geosciences, Tübingen University, Tübingen, Germany
| | - Muammar Mansor
- Geomicrobiology, Department of Geosciences, Tübingen University, Tübingen, Germany
| | - Andreas Kappler
- Geomicrobiology, Department of Geosciences, Tübingen University, Tübingen, Germany
- Cluster of Excellence EXC 2124, Controlling Microbes to Fight Infection, Tübingen, Germany
| | - Jan-Peter Duda
- Sedimentology and Organic Geochemistry, Department of Geosciences, Tübingen University, Tübingen, Germany
- Geobiology, Geoscience Center, Göttingen University, Göttingen, Germany
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Graham HV, Elsila JE, Dworkin JP, Sandford SA, Aponte JC. Deuterium Isotope Fractionation of Polycyclic Aromatic Hydrocarbons in Meteorites as an Indicator of Interstellar/Protosolar Processing History. Life (Basel) 2022; 12:life12091368. [PMID: 36143402 PMCID: PMC9502081 DOI: 10.3390/life12091368] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Revised: 08/01/2022] [Accepted: 08/02/2022] [Indexed: 11/16/2022] Open
Abstract
The stable isotope composition of soluble and insoluble organic compounds in carbonaceous chondrites can be used to determine the provenance of organic molecules in space. Deuterium enrichment in meteoritic organics could be a residual signal of synthetic reactions occurring in the cold interstellar medium or an indicator of hydrothermal parent-body reactions. δD values have been measured in grains and bulk samples for a wide range of meteorites; however, these reservoirs are highly variable and may have experienced fractionation during thermal and/or aqueous alteration. Among the plethora of organic compounds in meteorites are polycyclic aromatic hydrocarbons (PAHs), which are stable and abundant in carbonaceous chondrites, and their δD ratio may preserve evidence about their formation environment as well as the influence of parent-body processes. This study tests hypotheses about the potential links between PAHs-deuteration concentrations and their formation conditions by examining the δD ratio of PAHs in three CM carbonaceous chondrites representing an aqueous alteration gradient. We use deuterium enrichments in soluble 2–5-ring PAHs as an indicator of either photon-driven deuteration due to unimolecular photodissociation in warm regions of space, gas-phase ion–molecule reactions in cold interstellar regions of space, or UV photolysis in ices. We also test hypothesized reaction pathways during parent-body processing that differ between partially and fully aromatized PAHs. New methodological approaches were developed to extract small, volatile PAHs without fractionation. Our results suggest that meteoritic PAHs could have formed through reactions in cold regions, with possible overprinting of deuterium enrichment during aqueous parent-body alteration, but the data could not rule out PAH alteration in icy mantles as well.
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Affiliation(s)
- Heather V. Graham
- Solar System Exploration Division, NASA Goddard Space Flight Center, MS-691, Greenbelt, MD 20771, USA
- Correspondence:
| | - Jamie E. Elsila
- Solar System Exploration Division, NASA Goddard Space Flight Center, MS-691, Greenbelt, MD 20771, USA
| | - Jason P. Dworkin
- Solar System Exploration Division, NASA Goddard Space Flight Center, MS-691, Greenbelt, MD 20771, USA
| | - Scott A. Sandford
- Space Science and Astrobiology Division, NASA Ames Research Center, MS 245-6, Moffett Field, CA 94035, USA
| | - Jose C. Aponte
- Solar System Exploration Division, NASA Goddard Space Flight Center, MS-691, Greenbelt, MD 20771, USA
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Simkus DN, Aponte JC, Elsila JE, Parker ET, Glavin DP, Dworkin JP. Methodologies for Analyzing Soluble Organic Compounds in Extraterrestrial Samples: Amino Acids, Amines, Monocarboxylic Acids, Aldehydes, and Ketones. Life (Basel) 2019; 9:E47. [PMID: 31174308 PMCID: PMC6617175 DOI: 10.3390/life9020047] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2019] [Revised: 05/18/2019] [Accepted: 05/27/2019] [Indexed: 11/19/2022] Open
Abstract
Soluble organic compositions of extraterrestrial samples offer valuable insights into the prebiotic organic chemistry of the solar system. This review provides a summary of the techniques commonly used for analyzing amino acids, amines, monocarboxylic acids, aldehydes, and ketones in extraterrestrial samples. Here, we discuss possible effects of various experimental factors (e.g., extraction protocols, derivatization methods, and chromatographic techniques) in order to highlight potential influences on the results obtained from different methodologies. This detailed summary and assessment of current techniques is intended to serve as a basic guide for selecting methodologies for soluble organic analyses and to emphasize some key considerations for future method development.
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Affiliation(s)
- Danielle N Simkus
- NASA Postdoctoral Program at NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA.
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA.
| | - José C Aponte
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA.
- Department of Chemistry, Catholic University of America, Washington, D.C. 20064, USA.
| | - Jamie E Elsila
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA.
| | - Eric T Parker
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA.
| | - Daniel P Glavin
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA.
| | - Jason P Dworkin
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA.
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Simkus DN, Aponte JC, Hilts RW, Elsila JE, Herd CDK. Compound-Specific Carbon Isotope Compositions of Aldehydes and Ketones in the Murchison Meteorite. METEORITICS & PLANETARY SCIENCE 2019; 54:142-156. [PMID: 32440084 PMCID: PMC7241578 DOI: 10.1111/maps.13202] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Accepted: 08/23/2018] [Indexed: 05/25/2023]
Abstract
Compound-specific carbon isotope analysis (δ13C) of meteoritic organic compounds can be used to elucidate the abiotic chemical reactions involved in their synthesis. The soluble organic content of the Murchison carbonaceous chondrite has been extensively investigated over the years, with a focus on the origins of amino acids and the potential role of Strecker-cyanohydrin synthesis in the early solar system. Previous δ13C investigations have targeted α-amino acid and α-hydroxy acid Strecker products and reactant HCN; however, δ13C values for meteoritic aldehydes and ketones (Strecker precursors) have not yet been reported. As such, the distribution of aldehydes and ketones in the cosmos and their role in prebiotic reactions have not been fully investigated. Here, we have applied an optimized O-(2,3,4,5,6-pentafluorobenzyl)hydroxylamine (PFBHA) derivatization procedure to the extraction, identification and δ13C analysis of carbonyl compounds in the Murchison meteorite. A suite of aldehydes and ketones, dominated by acetaldehyde, propionaldehyde and acetone, were detected in the sample. δ13C values, ranging from -10.0‰ to +66.4‰, were more 13C-depleted than would be expected for aldehydes and ketones derived from the interstellar medium, based on interstellar 12C/13C ratios. These relatively 13C-depleted values suggest that chemical processes taking place in asteroid parent bodies (e.g. oxidation of the IOM) may provide a secondary source of aldehydes and ketones in the solar system. Comparisons between δ13C compositions of meteoritic aldehydes and ketones and other organic compound classes were used to evaluate potential structural relationships and associated reactions, including Strecker synthesis and alteration-driven chemical pathways.
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Affiliation(s)
- Danielle N. Simkus
- Department of Earth and Atmospheric Sciences, University of Alberta, Edmonton, AB, Canada
- Current affiliation: NASA Postdoctoral Program at NASA Goddard Space Flight Center, Greenbelt, MD, USA
- Solar System Exploration Division, Code 691, NASA Goddard Space Flight Center, Greenbelt, MD, USA
| | - José C. Aponte
- Solar System Exploration Division, Code 691, NASA Goddard Space Flight Center, Greenbelt, MD, USA
- Catholic University of America, Washington, D.C., USA
| | - Robert W. Hilts
- Department of Physical Sciences, MacEwan University, Edmonton, AB, Canada
| | - Jamie E. Elsila
- Solar System Exploration Division, Code 691, NASA Goddard Space Flight Center, Greenbelt, MD, USA
| | - Christopher D. K. Herd
- Department of Earth and Atmospheric Sciences, University of Alberta, Edmonton, AB, Canada
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Miller AZ, De la Rosa JM, Jiménez-Morillo NT, Pereira MF, González-Pérez JA, Calaforra JM, Saiz-Jimenez C. Analytical pyrolysis and stable isotope analyses reveal past environmental changes in coralloid speleothems from Easter Island (Chile). J Chromatogr A 2016; 1461:144-52. [DOI: 10.1016/j.chroma.2016.07.038] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2016] [Revised: 07/14/2016] [Accepted: 07/15/2016] [Indexed: 10/21/2022]
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Elsila JE, Aponte JC, Blackmond DG, Burton AS, Dworkin JP, Glavin DP. Meteoritic Amino Acids: Diversity in Compositions Reflects Parent Body Histories. ACS CENTRAL SCIENCE 2016; 2:370-9. [PMID: 27413780 PMCID: PMC4919777 DOI: 10.1021/acscentsci.6b00074] [Citation(s) in RCA: 73] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2016] [Indexed: 05/21/2023]
Abstract
The analysis of amino acids in meteorites dates back over 50 years; however, it is only in recent years that research has expanded beyond investigations of a narrow set of meteorite groups (exemplified by the Murchison meteorite) into meteorites of other types and classes. These new studies have shown a wide diversity in the abundance and distribution of amino acids across carbonaceous chondrite groups, highlighting the role of parent body processes and composition in the creation, preservation, or alteration of amino acids. Although most chiral amino acids are racemic in meteorites, the enantiomeric distribution of some amino acids, particularly of the nonprotein amino acid isovaline, has also been shown to vary both within certain meteorites and across carbonaceous meteorite groups. Large l-enantiomeric excesses of some extraterrestrial protein amino acids (up to ∼60%) have also been observed in rare cases and point to nonbiological enantiomeric enrichment processes prior to the emergence of life. In this Outlook, we review these recent meteoritic analyses, focusing on variations in abundance, structural distributions, and enantiomeric distributions of amino acids and discussing possible explanations for these observations and the potential for future work.
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Affiliation(s)
- Jamie E. Elsila
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
- E-mail:
| | - José C. Aponte
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
- Department
of Chemistry, Catholic University, Washington, D.C. 20064, United States
| | - Donna G. Blackmond
- Department of Chemistry, The Scripps Research
Institute, La Jolla, California 92037, United States
| | - Aaron S. Burton
- Astromaterials Research and Exploration
Science Division, NASA Johnson Space Center, Houston, Texas 77058, United States
| | - Jason P. Dworkin
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
| | - Daniel P. Glavin
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
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Chloromethane release from carbonaceous meteorite affords new insight into Mars lander findings. Sci Rep 2014; 4:7010. [PMID: 25394222 PMCID: PMC4230006 DOI: 10.1038/srep07010] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2014] [Accepted: 10/13/2014] [Indexed: 11/08/2022] Open
Abstract
Controversy continues as to whether chloromethane (CH3Cl) detected during pyrolysis of Martian soils by the Viking and Curiosity Mars landers is indicative of organic matter indigenous to Mars. Here we demonstrate CH3Cl release (up to 8 μg/g) during low temperature (150–400°C) pyrolysis of the carbonaceous chondrite Murchison with chloride or perchlorate as chlorine source and confirm unequivocally by stable isotope analysis the extraterrestrial origin of the methyl group (δ2H +800 to +1100‰, δ13C −19.2 to +10‰,). In the terrestrial environment CH3Cl released during pyrolysis of organic matter derives from the methoxyl pool. The methoxyl pool in Murchison is consistent both in magnitude (0.044%) and isotope signature (δ2H +1054 ± 626‰, δ13C +43.2 ± 38.8‰,) with that of the CH3Cl released on pyrolysis. Thus CH3Cl emissions recorded by Mars lander experiments may be attributed to methoxyl groups in undegraded organic matter in meteoritic debris reaching the Martian surface being converted to CH3Cl with perchlorate or chloride in Martian soil. However we cannot discount emissions arising additionally from organic matter of indigenous origin. The stable isotope signatures of CH3Cl detected on Mars could potentially be utilized to determine its origin by distinguishing between terrestrial contamination, meteoritic infall and indigenous Martian sources.
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Sephton MA. Pyrolysis and mass spectrometry studies of meteoritic organic matter. MASS SPECTROMETRY REVIEWS 2012; 31:560-569. [PMID: 22407548 DOI: 10.1002/mas.20354] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2011] [Revised: 11/10/2011] [Accepted: 11/10/2011] [Indexed: 05/31/2023]
Abstract
Meteorites are fragments of extraterrestrial materials that fall to the Earth's surface. The carbon-rich meteorites are derived from ancient asteroids that have remained relatively unprocessed since the formation of the Solar System 4.56 billion years ago. They contain a variety of extraterrestrial organic molecules that are a record of chemical evolution in the early Solar System and subsequent aqueous and thermal processes on their parent bodies. The major organic component (>70%) is a macromolecular material that resists straightforward solvent extraction. In response to its intractable nature, the most common means of investigating this exotic material involves a combination of thermal decomposition (pyrolysis) and mass spectrometry. Recently the approach has also been used to explore controversial claims of organic matter in meteorites from Mars. This review summarizes the pyrolysis data obtained from meteorites and outlines key interpretations.
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Affiliation(s)
- M A Sephton
- Department of Earth Science and Engineering, South Kensington Campus, Imperial College, London SW7 2AZ, UK.
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Brédy R, Bernard J, Chen L, Montagne G, Li B, Martin S. Fragmentation of adenine under energy control. J Chem Phys 2009; 130:114305. [DOI: 10.1063/1.3080162] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023] Open
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Sephton MA. Organic matter in carbonaceous meteorites: past, present and future research. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2005; 363:2729-42. [PMID: 16286287 DOI: 10.1098/rsta.2005.1670] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Carbonaceous meteorites are fragments of ancient asteroids that have remained relatively unprocessed since the formation of the Solar System. These carbon-rich objects provide a record of prebiotic chemical evolution and a window on the early Solar System. Many compound classes are present reflecting a rich organic chemical environment during the formation of the planets. Recent theories suggest that similar extraterrestrial organic mixtures may have acted as the starting materials for life on Earth.
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Affiliation(s)
- Mark A Sephton
- Impacts and Astromaterials Research Centre (IARC), South Kensington Campus, Imperial College Department of Earth Science and Engineering London SW7 2AZ, UK.
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Mahajan TB, Elsila JE, Deamer DW, Zare RN. Formation of carbon-carbon bonds in the photochemical alkylation of polycyclic aromatic hydrocarbons. ORIGINS LIFE EVOL B 2003; 33:17-35. [PMID: 12967271 DOI: 10.1023/a:1023996314942] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
The reaction of polycyclic aromatic hydrocarbons (PAHs) with alkanes was examined in the presence of ultraviolet (UV) light under model prebiotic Earth and interstellar medium (ISM) conditions. We observed the formation of alkylated PAHs from a variety of PAHs and alkanes, which was caused by the absorption of UV light by the PAH molecule. Photoalkylation occurred in PAHs and alkanes in solution, in thin films in contact with simulated ocean water, and in matrices simulating ISM conditions. Photoalkylation occurred readily, with significant product yields within 5 h of irradiation. Because alkanes and PAHs are presumed to be part of the organic inventory in the ISM and on the early Earth, we propose that this photoalkylation reaction is a plausible pathway for the formation of carbon-carbon bonds in both these environments.
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Affiliation(s)
- Tania B Mahajan
- Department of Chemistry, Stanford University, Stanford, CA 94305-5080, USA
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Current literature in mass spectrometry. JOURNAL OF MASS SPECTROMETRY : JMS 2002; 37:443-453. [PMID: 11948851 DOI: 10.1002/jms.251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
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