A Novel Generalized 3D-QSAR Model of Camptothecin Analogs

Structure-Dependent Eco-Toxicity of Vegetable Tannin

Vegetable tannin is widely applied in various industries, in agriculture, and in water treatment as a natural polyphenolic compound; however, little data has been collected concerning the relationship between structure and eco-toxicity. Here, the toxicity of six commercial tannin and three model chemicals was assessed using Photobacterium phosphoreum. Two kinds of hydrolyzed tannin displayed higher bioluminescence inhibition than four kinds of condensed tannin, and the model chemical of hydrolyzed tannin also showed greater toxicity than those of condensed tannin, indicating the structure dependent eco-toxicity of vegetable tannin. The reactive toxicity mechanism was proposed, which was illustrated by molecular simulations based on the model chemicals and luciferase.

Revisiting a receptor-based pharmacophore hypothesis for human A(2A) adenosine receptor antagonists

The application of both structure- and ligand-based design approaches represents to date one of the most useful strategies in the discovery of new drug candidates. In the present paper, we investigated how the application of docking-driven conformational analysis can improve the predictive ability of 3D-QSAR statistical models. With the use of the crystallographic structure in complex with the high affinity antagonist ZM 241385 (4-(2-[7-amino-2-(2-furyl)[1,2,4]-triazolo[2,3-a][1,3,5]triazin-5-ylamino]ethyl)phenol), we revisited a general pharmacophore hypothesis for the human A(2A) adenosine receptor of a set of 751 known antagonists, by applying an integrated ligand- and structure-based approach. Our novel pharmacophore hypothesis has been validated by using an external test set of 29 newly synthesized human adenosine receptor antagonists.