A model-based iterative reconstruction algorithm DIRA using patient-specific tissue classification via DECT for improved quantitative CT in dose planning

SSDL-an automated semi-supervised deep learning approach for patient-specific 3D reconstruction of proximal femur from QCT images

Deep Learning (DL) techniques have recently been used in medical image segmentation and the reconstruction of 3D anatomies of a human body. In this work, we propose a semi-supervised DL (SSDL) approach utilizing a CNN-based 3D U-Net model for femur segmentation from sparsely annotated quantitative computed tomography (QCT) slices. Specifically, QCT slices at the proximal end of the femur forming ball and socket joint with acetabulum were annotated for precise segmentation, where a segmenting binary mask was generated using a 3D U-Net model to segment the femur accurately. A total of 5474 QCT slices were considered for training among which 2316 slices were annotated. 3D femurs were further reconstructed from segmented slices employing polynomial spline interpolation. Both qualitative and quantitative performance of segmentation and 3D reconstruction were satisfactory with more than 90% accuracy achieved for all of the standard performance metrics considered. The spatial overlap index and reproducibility validation metric for segmentation-Dice Similarity Coefficient was 91.8% for unseen patients and 99.2% for validated patients. An average relative error of 12.02% and 10.75% for volume and surface area, respectively, were computed for 3D reconstructed femurs. The proposed approach demonstrates its effectiveness in accurately segmenting and reconstructing 3D femur from QCT slices.

Stopping-power ratio estimation for proton radiotherapy using dual-energy computed tomography and prior-image constrained denoising

BACKGROUND

Dual-energy computed tomography (DECT) is a promising technique for estimating stopping-power ratio (SPR) for proton therapy planning. It is known, however, that deriving electron density (ED) and effective atomic number (EAN) from DECT data can cause noise amplification in the resulting SPR images. This can negate the benefits of DECT.

PURPOSE

This work introduces a new algorithm for estimating SPR from DECT with noise suppression, using a pair of CT scans with spectral separation. The method is demonstrated using phantom measurements.

MATERIALS AND METHODS

An iterative algorithm is presented, reconstructing ED and EAN with noise suppression, based on Prior Image Constrained Denoising (PIC-D). The algorithm is tested using a Siemens Definition AS+ CT scanner (Siemens Healthcare, Forchheim, Germany). Three phantoms are investigated: a calibration phantom (CIRS 062M), a QA phantom (CATPHAN 700), and an anthropomorphic head phantom (CIRS 731-HN). A task-transfer function (TTF) and the noise power spectrum are derived from SPR images of the QA phantom for the evaluation of image quality. Comparisons of accuracy and noise for ED, EAN, and SPR are made for various versions of the algorithm in comparison to a solution based on Siemens syngo.via Rho/Z software and the current clinical standard of a single-energy CT stoichiometric calibration. A gamma analysis is also applied to the SPR images of the head phantom and water-equivalent distance (WED) is evaluated in a treatment planning system for a proton treatment field.

RESULTS

The algorithm is effective at suppressing noise in both ED and EAN and hence also SPR. The noise is tunable to a level equivalent to or lower than that of the syngo.via Rho/Z software. The spatial resolution (10% and 50% frequencies in the TTF) does not degrade even for the highest noise suppression investigated, although the average spatial frequency of noise does decrease. The PIC-D algorithm showed better accuracy than syngo.via Rho/Z for low density materials. In the calibration phantom, it was superior even when excluding lung substitutes, with root-mean-square deviations for ED and EAN less than 0.3% and 2%, respectively, compared to 0.5% and 3%. In the head phantom, however, the SPR accuracy of the PIC-D algorithm was comparable (excluding sinus tissue) to that derived from syngo.via Rho/Z: less than 1% error for soft tissue, brain, and trabecular bone substitutes and 5-7% for cortical bone, with the larger error for the latter likely related to the phantom geometry. Gamma evaluation showed that PIC-D can suppress noise in a patient-like geometry without introducing substantial errors in SPR. The absolute pass rates were almost identical for PIC-D and syngo.via Rho/Z. In the WED evaluations no general differences were shown.

CONCLUSIONS

The PIC-D DECT algorithm provides scanner-specific calibration and tunable noise suppression. It is vendor agnostic and applicable to any pair of CT scans with spectral separation. Improved accuracy to current methods was not clearly demonstrated for the complex geometry of a head phantom, but the suppression of noise without spatial resolution degradation and the possibility of incorporating constraints on image properties, suggests the usefulness of the approach.

OPTIMAL SELECTION OF BASE MATERIALS FOR ACCURATE DUAL-ENERGY COMPUTED TOMOGRAPHY: COMPARISON BETWEEN THE ALVAREZ-MACOVSKI METHOD AND DIRA

The choice of the material base to which the material decomposition is performed in dual-energy computed tomography may affect the quality of reconstructed images. The aim of this work is to investigate how the commonly used bases (water, bone), (water, iodine) and (photoelectric effect, Compton scattering) affect the reconstructed linear attenuation coefficient in the case of the Alvarez-Macovski method. The performance of this method is also compared with the performance of the Dual-energy Iterative Reconstruction Algorithm (DIRA). In both cases, the study is performed using simulations. The results show that the Alvarez-Macovski method produced artefacts when iodine was present in the phantom together with human tissues since this method can only work with one doublet. It was shown that these artefacts could be avoided with DIRA using the (water, bone) doublet for tissues and the (water, iodine) doublet for the iodine solution.

SEMI-AUTOMATED 3D SEGMENTATION OF PELVIC REGION BONES IN CT VOLUMES FOR THE ANNOTATION OF MACHINE LEARNING DATASETS

Automatic segmentation of bones in computed tomography (CT) images is used for instance in beam hardening correction algorithms where it improves the accuracy of resulting CT numbers. Of special interest are pelvic bones, which-because of their strong attenuation-affect the accuracy of brachytherapy in this region. This work evaluated the performance of the JJ2016 algorithm with the performance of MK2014v2 and JS2018 algorithms; all these algorithms were developed by authors. Visual comparison, and, in the latter case, also Dice similarity coefficients derived from the ground truth were used. It was found that the 3D-based JJ2016 performed better than the 2D-based MK2014v2, mainly because of the more accurate hole filling that benefitted from information in adjacent slices. The neural network-based JS2018 outperformed both traditional algorithms. It was, however, limited to the resolution of 1283 owing to the limited amount of memory in the graphical processing unit (GPU).

ACCURACY OF CT NUMBERS OBTAINED BY DIRA AND MONOENERGETIC PLUS ALGORITHMS IN DUAL-ENERGY COMPUTED TOMOGRAPHY

Dual-energy computed tomography (CT) can be used in radiotherapy treatment planning for the calculation of absorbed dose distributions. The aim of this work is to evaluate whether there is room for improvement in the accuracy of the Monoenergetic Plus algorithm by Siemens Healthineers. A Siemens SOMATOM Force scanner was used to scan a cylindrical polymethyl methacrylate phantom with four rod-inserts made of different materials. Images were reconstructed using ADMIRE and processed with Monoenergetic Plus. The resulting CT numbers were compared with tabulated values and values simulated by the proof-of-a-concept algorithm DIRA developed by the authors. Both the Monoenergetic Plus and DIRA algorithms performed well; the accuracy of attenuation coefficients was better than about ±1% at the energy of 70 keV. Compared with DIRA, the worse performance of Monoenergetic Plus was caused by its (i) two-material decomposition to iodine and water and (ii) imperfect suppression of the beam hardening artifact in ADMIRE.

Multi-energy computed tomography and material quantification: Current barriers and opportunities for advancement

Computed tomography (CT) technology has rapidly evolved since its introduction in the 1970s. It is a highly important diagnostic tool for clinicians as demonstrated by the significant increase in utilization over several decades. However, much of the effort to develop and advance CT applications has been focused on improving visual sensitivity and reducing radiation dose. In comparison to these areas, improvements in quantitative CT have lagged behind. While this could be a consequence of the technological limitations of conventional CT, advanced dual-energy CT (DECT) and photon-counting detector CT (PCD-CT) offer new opportunities for quantitation. Routine use of DECT is becoming more widely available and PCD-CT is rapidly developing. This review covers efforts to address an unmet need for improved quantitative imaging to better characterize disease, identify biomarkers, and evaluate therapeutic response, with an emphasis on multi-energy CT applications. The review will primarily discuss applications that have utilized quantitative metrics using both conventional and DECT, such as bone mineral density measurement, evaluation of renal lesions, and diagnosis of fatty liver disease. Other topics that will be discussed include efforts to improve quantitative CT volumetry and radiomics. Finally, we will address the use of quantitative CT to enhance image-guided techniques for surgery, radiotherapy and interventions and provide unique opportunities for development of new contrast agents.

Performance of sparse-view CT reconstruction with multi-directional gradient operators

To further reduce the noise and artifacts in the reconstructed image of sparse-view CT, we have modified the traditional total variation (TV) methods, which only calculate the gradient variations in x and y directions, and have proposed 8- and 26-directional (the multi-directional) gradient operators for TV calculation to improve the quality of reconstructed images. Different from traditional TV methods, the proposed 8- and 26-directional gradient operators additionally consider the diagonal directions in TV calculation. The proposed method preserves more information from original tomographic data in the step of gradient transform to obtain better reconstruction image qualities. Our algorithms were tested using two-dimensional Shepp–Logan phantom and three-dimensional clinical CT images. Results were evaluated using the root-mean-square error (RMSE), peak signal-to-noise ratio (PSNR), and universal quality index (UQI). All the experiment results show that the sparse-view CT images reconstructed using the proposed 8- and 26-directional gradient operators are superior to those reconstructed by traditional TV methods. Qualitative and quantitative analyses indicate that the more number of directions that the gradient operator has, the better images can be reconstructed. The 8- and 26-directional gradient operators we proposed have better capability to reduce noise and artifacts than traditional TV methods, and they are applicable to be applied to and combined with existing CT reconstruction algorithms derived from CS theory to produce better image quality in sparse-view reconstruction.