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Gao L, Xie K, Sun J, Lin T, Sui J, Yang G, Ni X. A transformer-based dual-domain network for reconstructing FOV extended cone-beam CT images from truncated sinograms in radiation therapy. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023; 241:107767. [PMID: 37633083 DOI: 10.1016/j.cmpb.2023.107767] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Revised: 08/15/2023] [Accepted: 08/15/2023] [Indexed: 08/28/2023]
Abstract
BACKGROUND AND OBJECTIVE Cone-beam computed tomography (CBCT) is widely used in clinical radiotherapy, but its small field of view (sFOV) limits its application potential. In this study, a transformer-based dual-domain network (dual_swin), which combined image domain restoration and sinogram domain restoration, was proposed for the reconstruction of complete CBCT images with extended FOV from truncated sinograms. METHODS The planning CT images with large FOV (LFOV) of 330 patients who received radiation therapy were collected. The synthetic CBCT (sCBCT) images with LFOV were generated from CT images by the trained cycleGAN network, and CBCT images with sFOV were obtained through forward projection, projection truncation, and filtered back projection (FBP), comprising the training and test data. The proposed dual_swin includes sinogram domain restoration, image domain restoration, and FBP layer, and the swin transformer blocks were used as the basic feature extraction module in the network to improve the global feature extraction ability. The proposed dual_swin was compared with the image domain method, the sinogram domain method, the U-Net based dual domain network (dual_Unet), and the traditional iterative reconstruction method based on prior image and conjugate gradient least-squares (CGLS) in the test of sCBCT images and clinical CBCT images. The HU accuracy and body contour accuracy of the predicted images by each method were evaluated. RESULTS The images generated using the CGLS method were fuzzy and obtained the lowest structural similarity (SSIM) among all methods in the test of sCBCT and clinical CBCT images. The predicted images by the image domain methods are quite different from the ground truth and have low accuracy on HU value and body contour. In comparison with image domain methods, sinogram domain methods improved the accuracy of HU value and body contour but introduced secondary artifacts and distorted bone tissue. The proposed dual_swin achieved the highest HU and contour accuracy with mean absolute error (MAE) of 23.0 HU, SSIM of 95.7%, dice similarity coefficient (DSC) of 99.6%, and Hausdorff distance (HD) of 4.1 mm in the test of sCBCT images. In the test of clinical patients, images that were predicted by dual_swin yielded MAE, SSIM, DSC, and HD of 38.2 HU, 91.7%, 99.0%, and 5.4 mm, respectively. The predicted images by the proposed dual_swin has significantly higher accuracy than the other methods (P < 0.05). CONCLUSIONS The proposed dual_swin can accurately reconstruct FOV extended CBCT images from the truncated sinogram to improve the application potential of CBCT images in radiotherapy.
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Affiliation(s)
- Liugang Gao
- School of Computer Science and Engineering, Southeast University, Nanjing, China; The Affiliated Changzhou NO.2 People's Hospital of Nanjing Medical University, Changzhou, China; Jiangsu Province Engineering Research Center of Medical Physics, Changzhou, China
| | - Kai Xie
- The Affiliated Changzhou NO.2 People's Hospital of Nanjing Medical University, Changzhou, China; Jiangsu Province Engineering Research Center of Medical Physics, Changzhou, China
| | - Jiawei Sun
- The Affiliated Changzhou NO.2 People's Hospital of Nanjing Medical University, Changzhou, China; Jiangsu Province Engineering Research Center of Medical Physics, Changzhou, China
| | - Tao Lin
- The Affiliated Changzhou NO.2 People's Hospital of Nanjing Medical University, Changzhou, China; Jiangsu Province Engineering Research Center of Medical Physics, Changzhou, China
| | - Jianfeng Sui
- The Affiliated Changzhou NO.2 People's Hospital of Nanjing Medical University, Changzhou, China; Jiangsu Province Engineering Research Center of Medical Physics, Changzhou, China
| | - Guanyu Yang
- School of Computer Science and Engineering, Southeast University, Nanjing, China.
| | - Xinye Ni
- The Affiliated Changzhou NO.2 People's Hospital of Nanjing Medical University, Changzhou, China; Jiangsu Province Engineering Research Center of Medical Physics, Changzhou, China.
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Karius A, Szkitsak J, Strnad V, Fietkau R, Bert C. Cone-beam CT imaging with laterally enlarged field of view based on independently movable source and detector. Med Phys 2023; 50:5135-5149. [PMID: 37194354 DOI: 10.1002/mp.16463] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Revised: 04/03/2023] [Accepted: 05/01/2023] [Indexed: 05/18/2023] Open
Abstract
BACKGROUND CBCT imaging with field of views (FOVs) exceeding the size of scans acquired in the conventional imaging geometry, i.e. with opposing source and detector, is of high clinical importance for many medical fields. A novel approach for enlarged FOV scanning with one full-scan (EnFOV360) or two short-scans (EnFOV180) using an O-arm system arises from non-isocentric imaging based on independent source and detector rotations. PURPOSE The presentation, description, and experimental validation of this novel approach and the novel scanning techniques EnFOV360 and EnFOV180 for an O-arm system forms the scope of this work. METHODS We describe the EnFOV360, EnFOV180, and non-isocentric imaging techniques for the acquisition of laterally extended FOVs. For their experimental validation, scans of dedicated quality assurance as well as anthropomorphic phantoms were acquired, with the phantoms being placed both within the tomographic plane and at the longitudinal FOV border with and without lateral shifts from the gantry center. Based on this, geometric accuracy, contrast-noise-ratio (CNR) of different materials, spatial resolution, noise characteristics, as well as CT number profiles were quantitatively assessed. Results were compared to scans performed with the conventional imaging geometry. RESULTS With EnFOV360 and EnFOV180, we increased the in-plane size of acquired FOVs from 250 × 250 mm2 obtained for the conventional imaging geometry to up to 400 × 400 mm2 for the performed measurements. Geometric accuracy was very high for all scanning techniques with mean values ≤0.21 ± 0.11 mm. CNR and spatial resolution were comparable between isocentric and non-isocentric full-scans as well as EnFOV360, whereas substantial image quality deteriorations in this respect were observed for EnFOV180. Image noise in the isocenter was lowest for conventional full-scans with 13.4 ± 0.2 HU. For laterally shifted phantom positions, noise increased for conventional scans and EnFOV360, whereas noise reductions were observed for EnFOV180. Considering the anthropomorphic phantom scans, both EnFOV360 and EnFOV180 were comparable to conventional full-scans. CONCLUSION Both enlarged FOV techniques have high potential for imaging laterally extended FOVs. EnFOV360 revealed an image quality comparable to conventional full-scans in general. EnFOV180 showed an inferior performance particularly regarding CNR and spatial resolution.
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Affiliation(s)
- Andre Karius
- Department of Radiation Oncology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
- Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), Erlangen, Germany
| | - Juliane Szkitsak
- Department of Radiation Oncology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
- Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), Erlangen, Germany
| | - Vratislav Strnad
- Department of Radiation Oncology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
- Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), Erlangen, Germany
| | - Rainer Fietkau
- Department of Radiation Oncology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
- Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), Erlangen, Germany
| | - Christoph Bert
- Department of Radiation Oncology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
- Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), Erlangen, Germany
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Xie K, Gao L, Xi Q, Zhang H, Zhang S, Zhang F, Sun J, Lin T, Sui J, Ni X. New technique and application of truncated CBCT processing in adaptive radiotherapy for breast cancer. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023; 231:107393. [PMID: 36739623 DOI: 10.1016/j.cmpb.2023.107393] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Revised: 01/26/2023] [Accepted: 01/31/2023] [Indexed: 06/18/2023]
Abstract
OBJECTIVE A generative adversarial network (TCBCTNet) was proposed to generate synthetic computed tomography (sCT) from truncated low-dose cone-beam computed tomography (CBCT) and planning CT (pCT). The sCT was applied to the dose calculation of radiotherapy for patients with breast cancer. METHODS The low-dose CBCT and pCT images of 80 female thoracic patients were used for training. The CBCT, pCT, and replanning CT (rCT) images of 20 thoracic patients and 20 patients with breast cancer were used for testing. All patients were fixed in the same posture with a vacuum pad. The CBCT images were scanned under the Fast Chest M20 protocol with a 50% reduction in projection frames compared with the standard Chest M20 protocol. Rigid registration was performed between pCT and CBCT, and deformation registration was performed between rCT and CBCT. In the training stage of the TCBCTNet, truncated CBCT images obtained from complete CBCT images by simulation were used. The input of the CBCT→CT generator was truncated CBCT and pCT, and TCBCTNet was applied to patients with breast cancer after training. The accuracy of the sCT was evaluated by anatomy and dosimetry and compared with the generative adversarial network with UNet and ResNet as the generators (named as UnetGAN, ResGAN). RESULTS The three models could improve the image quality of CBCT and reduce the scattering artifacts while preserving the anatomical geometry of CBCT. For the chest test set, TCBCTNet achieved the best mean absolute error (MAE, 21.18±3.76 HU), better than 23.06±3.90 HU in UnetGAN and 22.47±3.57 HU in ResGAN. When applied to patients with breast cancer, TCBCTNet performance decreased, and MAE was 25.34±6.09 HU. Compared with rCT, sCT by TCBCTNet showed consistent dose distribution and subtle absolute dose differences between the target and the organ at risk. The 3D gamma pass rates were 98.98%±0.64% and 99.69%±0.22% at 2 mm/2% and 3 mm/3%, respectively. Ablation experiments confirmed that pCT and content loss played important roles in TCBCTNet. CONCLUSIONS High-quality sCT images could be synthesized from truncated low-dose CBCT and pCT by using the proposed TCBCTNet model. In addition, sCT could be used to accurately calculate the dose distribution for patients with breast cancer.
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Affiliation(s)
- Kai Xie
- Radiotherapy Department, Second People's Hospital of Changzhou, Nanjing Medical University, Changzhou 213000, China; Jiangsu Province Engineering Research Center of Medical Physics, Changzhou 213000, China
| | - Liugang Gao
- Radiotherapy Department, Second People's Hospital of Changzhou, Nanjing Medical University, Changzhou 213000, China; Jiangsu Province Engineering Research Center of Medical Physics, Changzhou 213000, China
| | - Qianyi Xi
- Center for Medical Physics, Nanjing Medical University, Changzhou 213003, China; Changzhou Key Laboratory of Medical Physics, Changzhou 213000, China
| | - Heng Zhang
- Center for Medical Physics, Nanjing Medical University, Changzhou 213003, China; Changzhou Key Laboratory of Medical Physics, Changzhou 213000, China
| | - Sai Zhang
- Center for Medical Physics, Nanjing Medical University, Changzhou 213003, China; Changzhou Key Laboratory of Medical Physics, Changzhou 213000, China
| | - Fan Zhang
- Center for Medical Physics, Nanjing Medical University, Changzhou 213003, China; Changzhou Key Laboratory of Medical Physics, Changzhou 213000, China
| | - Jiawei Sun
- Radiotherapy Department, Second People's Hospital of Changzhou, Nanjing Medical University, Changzhou 213000, China; Jiangsu Province Engineering Research Center of Medical Physics, Changzhou 213000, China
| | - Tao Lin
- Radiotherapy Department, Second People's Hospital of Changzhou, Nanjing Medical University, Changzhou 213000, China; Jiangsu Province Engineering Research Center of Medical Physics, Changzhou 213000, China
| | - Jianfeng Sui
- Radiotherapy Department, Second People's Hospital of Changzhou, Nanjing Medical University, Changzhou 213000, China; Jiangsu Province Engineering Research Center of Medical Physics, Changzhou 213000, China
| | - Xinye Ni
- Radiotherapy Department, Second People's Hospital of Changzhou, Nanjing Medical University, Changzhou 213000, China; Jiangsu Province Engineering Research Center of Medical Physics, Changzhou 213000, China; Center for Medical Physics, Nanjing Medical University, Changzhou 213003, China; Changzhou Key Laboratory of Medical Physics, Changzhou 213000, China.
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Hirashima H, Nakamura M, Imanishi K, Nakao M, Mizowaki T. Evaluation of generalization ability for deep learning-based auto-segmentation accuracy in limited field of view CBCT of male pelvic region. J Appl Clin Med Phys 2023; 24:e13912. [PMID: 36659871 PMCID: PMC10161011 DOI: 10.1002/acm2.13912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Revised: 01/09/2023] [Accepted: 01/10/2023] [Indexed: 01/21/2023] Open
Abstract
PURPOSE The aim of this study was to evaluate generalization ability of segmentation accuracy for limited FOV CBCT in the male pelvic region using a full-image CNN. Auto-segmentation accuracy was evaluated using various datasets with different intensity distributions and FOV sizes. METHODS A total of 171 CBCT datasets from patients with prostate cancer were enrolled. There were 151, 10, and 10 CBCT datasets acquired from Vero4DRT, TrueBeam STx, and Clinac-iX, respectively. The FOV for Vero4DRT, TrueBeam STx, and Clinac-iX was 20, 26, and 25 cm, respectively. The ROIs, including the bladder, prostate, rectum, and seminal vesicles, were manually delineated. The U2 -Net CNN network architecture was used to train the segmentation model. A total of 131 limited FOV CBCT datasets from Vero4DRT were used for training (104 datasets) and validation (27 datasets); thereafter the rest were for testing. The training routine was set to save the best weight values when the DSC in the validation set was maximized. Segmentation accuracy was qualitatively and quantitatively evaluated between the ground truth and predicted ROIs in the different testing datasets. RESULTS The mean scores ± standard deviation of visual evaluation for bladder, prostate, rectum, and seminal vesicle in all treatment machines were 1.0 ± 0.7, 1.5 ± 0.6, 1.4 ± 0.6, and 2.1 ± 0.8 points, respectively. The median DSC values for all imaging devices were ≥0.94 for the bladder, 0.84-0.87 for the prostate and rectum, and 0.48-0.69 for the seminal vesicles. Although the DSC values for the bladder and seminal vesicles were significantly different among the three imaging devices, the DSC value of the bladder changed by less than 1% point. The median MSD values for all imaging devices were ≤1.2 mm for the bladder and 1.4-2.2 mm for the prostate, rectum, and seminal vesicles. The MSD values for the seminal vesicles were significantly different between the three imaging devices. CONCLUSION The proposed method is effective for testing datasets with different intensity distributions and FOV from training datasets.
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Affiliation(s)
- Hideaki Hirashima
- Department of Radiation Oncology and Image-Applied Therapy, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto, Japan
| | - Mitsuhiro Nakamura
- Department of Radiation Oncology and Image-Applied Therapy, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto, Japan.,Department of Advanced Medical Physics, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto, Japan
| | | | - Megumi Nakao
- Department of Advanced Medical Engineering and Intelligence, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto, Japan
| | - Takashi Mizowaki
- Department of Radiation Oncology and Image-Applied Therapy, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto, Japan
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Hu Y, Arnesen M, Aland T. Characterization of an advanced cone beam CT (CBCT) reconstruction algorithm used for dose calculation on Varian Halcyon linear accelerators. Biomed Phys Eng Express 2022; 8. [PMID: 35139503 DOI: 10.1088/2057-1976/ac536b] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Accepted: 02/09/2022] [Indexed: 11/12/2022]
Abstract
In this study, the performance of a new iterative reconstruction algorithm, the pre-clinical AcurosXB iCBCT algorithm, has been characterized on Varian Halcyon linear accelerators with respect to the potential of radiotherapy dose calculations on CBCT images. The study utilized various phantom setups to verify the accuracy of the pre-clinical algorithm under different scatter conditions and compared dose calculations performed on CBCT images reconstructed with the pre-clinical algorithm to those performed on typical planning CT images. The results indicated that despite showing improvements compared to the existing iCBCT protocol, certain restrictions should be introduced when the pre-clinical AcurosXB iCBCT algorithm was used for dose calculations. Changes in the scatter condition exhibited a larger effect on CBCTs than on planning CTs. Therefore, users should be careful in offsetting the patient and positioning the patient's arms if the resultant images will be used for dose calculations. In addition, protocols with different kV settings should be approached with caution, where 100 kV protocols should only be used to scan the head and neck area, while the rest of the body should be scanned with the 125 kV and 140 kV protocols. When the patient is set up properly and the appropriate energy is selected for the anatomical area, the uncertainty of using the novel AcurosXB iCBCT algorithm for treatment planning dose calculation is within ± 2.0%.
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Affiliation(s)
- Yunfei Hu
- Gosford, Icon Cancer Care South Brisbane, 41 William St, Gosford, New South Wales, 2077, AUSTRALIA
| | - Marius Arnesen
- Toowoomba, Icon Cancer Care South Brisbane, St Andrew's Cancer Care Centre, 280 North St, Rockville, Queensland, 4350, AUSTRALIA
| | - Trent Aland
- National Head Office, Icon Cancer Care South Brisbane, Level 1/22 Cordelia St, South Brisbane, Queensland, 4101, AUSTRALIA
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