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von Domaros M, Jähnigen S, Friedrich J, Kirchner B. Quantum cluster equilibrium model of N-methylformamide–water binary mixtures. J Chem Phys 2016; 144:064305. [DOI: 10.1063/1.4941278] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Michael von Domaros
- Mulliken Center for Theoretical Chemistry, Universität Bonn, Beringstr. 4, D-53115 Bonn, Germany
| | - Sascha Jähnigen
- Martin-Luther-Universität Halle-Wittenberg, von-Danckelmann-Platz 4, D-06120 Halle, Germany
| | - Joachim Friedrich
- Technische Universität Chemnitz, Straße der Nationen 62, D-09111 Chemnitz, Germany
| | - Barbara Kirchner
- Mulliken Center for Theoretical Chemistry, Universität Bonn, Beringstr. 4, D-53115 Bonn, Germany
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Samdal S, Møllendal H, Guillemin JC. Conformational properties of cis- and trans-N-Cyclopropylformamide studied by microwave spectroscopy and quantum chemical calculations. J Phys Chem A 2015; 119:3375-83. [PMID: 25772313 DOI: 10.1021/acs.jpca.5b00542] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The microwave spectra of cis- and trans-N-cyclopropylformamide, C3H5NHC(═O)H, have been investigated in the 31-123 GHz spectral region at room temperature. Rotational isomerism about the Cring-N bond is possible for both cis and trans. MP2/cc-pVTZ and CCSD/cc-pVTZ calculations indicate that there are two conformers in the case of cis, called Cis I and Cis II, while only one rotamer, denoted Trans, exists for trans-N-cyclopropylformamide. The quantum chemical methods predict that Cis I has an electronic energy that is 8-9 kJ/mol higher than the energy of Cis II. The CCSD H-Cring-N-H dihedral angle is 0.0° in Cis I, 93.0° in Cis II and 79.9° in Trans. The CCSD and MP2 calculations predict a slightly nonplanar structure for the amide moiety in both Trans and Cis II, whereas Cis I is computed to have a planar amide group bisecting the cyclopropyl ring. Surprisingly, the MP2 and CCSD methods predict practically the same energy for Trans and Cis II. The spectra of Cis II in the ground state and in two vibrationally excited states were assigned, while the spectrum of Cis I was not found presumably because of a low Boltzmann population due to a relatively large energy difference (8-9 kJ/mol). The spectra of the ground vibrational state and seven vibrationally excited states of Trans, were assigned. Vibrational frequencies of several of the excited state of both Cis II and Trans were determined by relative intensity measurements. The experimental and CCSD rotational constants are in satisfactory agreement. The MP2 values of the quartic centrifugal distortion constants of both species are in relatively poor agreement with their experimental counterparts. The MP2 vibration-rotation constants and sextic centrifugal distortion constants have little resemblance with the corresponding experimental values.
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Affiliation(s)
- Svein Samdal
- †Centre for Theoretical and Computational Chemistry (CTCC), Department of Chemistry, University of Oslo, P.O. Box 1033 Blindern, NO-0315 Oslo, Norway
| | - Harald Møllendal
- †Centre for Theoretical and Computational Chemistry (CTCC), Department of Chemistry, University of Oslo, P.O. Box 1033 Blindern, NO-0315 Oslo, Norway
| | - Jean-Claude Guillemin
- ‡Institut des Sciences Chimiques de Rennes, École Nationale Supérieure de Chimie de Rennes, CNRS, UMR 6226, 11 Allée de Beaulieu, CS 50837, 35708 Rennes Cedex 7, France
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Knorr R, Hennig KO, Schubert B, Böhrer P. Shorter and Easier Syntheses of Di-tert-butylketene and Related gem-Di-tert-butyl Compounds. European J Org Chem 2010. [DOI: 10.1002/ejoc.201000888] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Shin S, Kurawaki A, Hamada Y, Shinya K, Ohno K, Tohara A, Sato M. Conformational behavior of N-methylformamide in the gas, matrix, and solution states as revealed by IR and NMR spectroscopic measurements and by theoretical calculations. J Mol Struct 2006. [DOI: 10.1016/j.molstruc.2006.01.005] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Tlahuextl M, Aguilar-Castro L, Camacho-Camacho C, Contreras R, Tapia-Benavides AR. Synthesis and structural studies ofN-(p-toluenesulfonyl)-amino acid 3,5-di-tert-butyl-2-phenolamides. HETEROATOM CHEMISTRY 2004. [DOI: 10.1002/hc.10223] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Aguilar-Castro L, Tlahuextl M, Tapia-Benavides AR, Tlahuext H. Synthesis and structural studies of newN-(p-toluenesulfonyl)amino acido-phenolamides. HETEROATOM CHEMISTRY 2003. [DOI: 10.1002/hc.10135] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Headley AD, Ganesan R, Nam J. The effect of the cyclopropyl group on the conformation of chemotactic formyl tripeptides. Bioorg Chem 2003; 31:99-108. [PMID: 12729567 DOI: 10.1016/s0045-2068(02)00522-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2002] [Indexed: 10/27/2022]
Abstract
Certain formyl peptides are powerful chemoattractants towards neutrophils. In this study, several formyl tripeptides were synthesized and used to investigate the effects of different amino acid residues in position 1 on their ability to stimulate neutrophil chemotaxis. Pig neutrophil chemotaxis towards the formyl tripeptide, HCO-Ac(3)C-Leu-Phe-OMe 1, where Ac(3)C represents 1-amino-1-cyclopropane carboxylic acid, was observed. Pig neutrophil chemotaxis towards a very similar formyl tripeptide, HCO-Aib-Leu-Phe-OMe 2, where Aib represents alpha-amino isobutyric acid, was not observed. Compared to the isopropyl group, it was shown that the cyclopropyl group induces a greater percentage of the E conformation about the formamide functionality in these peptides. For 1 and 2, the E isomer distributions in CDCl3 are 36 and 9%, respectively. Since a major difference between these two peptides is the Z/E isomeric distribution, one implication is that the peptide-receptor site interactions involving the E conformer are more effective than those of the Z conformer. No pig neutrophil chemotaxis towards the formyl tripeptides, HCO-Ala-Leu-Phe-OMe 3 and HCO-Gly-Leu-Phe-OMe 4 was observed. These formyl tripeptides exhibit a low percentage of the E isomer, similar to that of peptide 2.
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Affiliation(s)
- Allan D Headley
- Department of Chemistry and Biochemistry, Texas Tech University, Box 41061, (Memorial Circle & Boston), Lubbock, TX 79409-1061, USA.
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Pawar DM, Khalil AA, Hooks DR, Collins K, Elliott T, Stafford J, Smith L, Noe EA. E and Z Conformations of Esters, Thiol Esters, and Amides. J Am Chem Soc 1998. [DOI: 10.1021/ja9723848] [Citation(s) in RCA: 73] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Diwakar M. Pawar
- Contribution from the Department of Chemistry, Jackson State University, Jackson, Mississippi 39217-0510
| | - Abdelnaser A. Khalil
- Contribution from the Department of Chemistry, Jackson State University, Jackson, Mississippi 39217-0510
| | - Denise R. Hooks
- Contribution from the Department of Chemistry, Jackson State University, Jackson, Mississippi 39217-0510
| | - Kenneth Collins
- Contribution from the Department of Chemistry, Jackson State University, Jackson, Mississippi 39217-0510
| | - Tijuana Elliott
- Contribution from the Department of Chemistry, Jackson State University, Jackson, Mississippi 39217-0510
| | - Jefforey Stafford
- Contribution from the Department of Chemistry, Jackson State University, Jackson, Mississippi 39217-0510
| | - Lucille Smith
- Contribution from the Department of Chemistry, Jackson State University, Jackson, Mississippi 39217-0510
| | - Eric A. Noe
- Contribution from the Department of Chemistry, Jackson State University, Jackson, Mississippi 39217-0510
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Chaney JD, Goss CR, Folting K, Santarsiero BD, Hollingsworth MD. Formyl C−H···O Hydrogen Bonding in Crystalline Bis-Formamides? J Am Chem Soc 1996. [DOI: 10.1021/ja960637b] [Citation(s) in RCA: 50] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jason D. Chaney
- Department of Chemistry, Indiana University Bloomington, Indiana 47405 Department of Chemistry, University of Alberta Edmonton, AB, T6G 2G2 Canada Department of Chemistry University of California at Berkeley Berkeley, California 94720
| | - Christopher R. Goss
- Department of Chemistry, Indiana University Bloomington, Indiana 47405 Department of Chemistry, University of Alberta Edmonton, AB, T6G 2G2 Canada Department of Chemistry University of California at Berkeley Berkeley, California 94720
| | - Kirsten Folting
- Department of Chemistry, Indiana University Bloomington, Indiana 47405 Department of Chemistry, University of Alberta Edmonton, AB, T6G 2G2 Canada Department of Chemistry University of California at Berkeley Berkeley, California 94720
| | - Bernard D. Santarsiero
- Department of Chemistry, Indiana University Bloomington, Indiana 47405 Department of Chemistry, University of Alberta Edmonton, AB, T6G 2G2 Canada Department of Chemistry University of California at Berkeley Berkeley, California 94720
| | - Mark D. Hollingsworth
- Department of Chemistry, Indiana University Bloomington, Indiana 47405 Department of Chemistry, University of Alberta Edmonton, AB, T6G 2G2 Canada Department of Chemistry University of California at Berkeley Berkeley, California 94720
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Gerothanassis IP, Troganis A, Vakka C. 17O and 1H-15N heteronuclear multiple quantum coherence (1H-15N HMQC) NMR of linear amides: evidence of an out-of-plane (torsion angle) deformation of the amide bond and pyramidicity at the amide nitrogen. Tetrahedron 1995. [DOI: 10.1016/0040-4020(95)00551-i] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Hansen PE, Jakobsen HJ. A natural abundance15N NMR investigation of bilirubin IX-α. ACTA ACUST UNITED AC 1984. [DOI: 10.1002/mrc.1270221015] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Kozerski L, Kamienska-Trela K, Kania L, Von Philipsborn W. 15N-NMR study of activated enamines. Structural dependence of ? (15N) andnJ(N,H) in primary, secondary and tertiary enamino-ketones, esters and amides. Helv Chim Acta 1983. [DOI: 10.1002/hlca.19830660722] [Citation(s) in RCA: 32] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Jakobsen HJ, Yang PI, Brey WS. Natural abundance proton-coupled15N NMR spectra of pyridines observed from proton polarization transfer experiments. ACTA ACUST UNITED AC 1981. [DOI: 10.1002/mrc.1270170413] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Sørensen OW, Scheibye S, Lawesson SO, Jakobsen HJ. Proton polarization transfer in natural abundance15N NMR studies ofE- andZ-isomers ofN-alkylformamides. ACTA ACUST UNITED AC 1981. [DOI: 10.1002/mrc.1270160416] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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