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Dal Poggetto G, DiCaprio A, Reibarkh M, Cohen RD. Ultra-clean pure shift NMR with optimal water suppression for analysis of aqueous pharmaceutical samples. Analyst 2024; 149:2227-2231. [PMID: 38517550 DOI: 10.1039/d3an02150e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/24/2024]
Abstract
Pure shift NMR experiments greatly enhance spectral resolution by collapsing multiplet structures into singlets and, with water suppression, can be used for aqueous samples. Here, we combine ultra-clean pure-shift NMR (SAPPHIRE) with two different internally encoded water suppression schemes to achieve optimal performance for small molecule and macrocyclic peptide pharmaceuticals in water and acetonitrile-water mixtures.
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Affiliation(s)
| | - Adam DiCaprio
- Merck & Co., Inc., 770 Sumneytown Pike, 19846, West Point, PA, USA
| | - Mikhail Reibarkh
- Merck & Co., Inc., 126 East Lincoln Avenue, 07065, Rahway, NJ, USA.
| | - Ryan D Cohen
- Merck & Co., Inc., 126 East Lincoln Avenue, 07065, Rahway, NJ, USA.
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Chen J, Torres AM, Zheng G, Price WS. Applications of WaterControl to TOCSY and COSY experiments. JOURNAL OF BIOMOLECULAR NMR 2020; 74:333-340. [PMID: 32415581 DOI: 10.1007/s10858-020-00319-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Accepted: 05/06/2020] [Indexed: 06/11/2023]
Abstract
WaterControl is a solvent suppression method based on WATERGATE and PGSTE and is very efficient in selectively reducing the solvent signal in 1D pulse-acquire and 2D NOESY of protein solutions. In this study, the WaterControl technique was appended to two common 2D NMR methods used in resonance assignment of proteins, namely TOCSY and CLIP-COSY. Similar to that observed in regular 1D pulse-acquire and 2D NOESY, the incorporation of WaterControl in these 2D methods led to excellent solvent suppression superior to that obtained using W3- or W5-based WATERGATE sequences. The water signal was essentially eliminated in the TOCSY and CLIP-COSY with WaterControl while useful cross peaks around the water resonance at ω2 were preserved. This is in contrast to the 2D spectra obtained from the corresponding WATERGATE containing sequences, where these cross peaks in the ω2 region are usually suppressed together with the water resonance. These new WaterControl sequences provide significantly improved water suppression thereby facilitating protein NMR studies.
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Affiliation(s)
- Johnny Chen
- Nanoscale Organisation and Dynamics Group, School of Science, Western Sydney University, Penrith, NSW, 2751, Australia
| | - Allan M Torres
- Nanoscale Organisation and Dynamics Group, School of Science, Western Sydney University, Penrith, NSW, 2751, Australia.
| | - Gang Zheng
- Nanoscale Organisation and Dynamics Group, School of Science, Western Sydney University, Penrith, NSW, 2751, Australia
| | - William S Price
- Nanoscale Organisation and Dynamics Group, School of Science, Western Sydney University, Penrith, NSW, 2751, Australia
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Willis SA, Zheng G, Torres AM, Stait-Gardner T, Price WS. A Simple and Effective Binomial Block Based Pulse Sequence Capable of Suppressing Multiple NMR Signals. J Phys Chem A 2018; 122:9712-9720. [PMID: 30475613 DOI: 10.1021/acs.jpca.8b08160] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A binomial-like block based multiple suppression NMR pulse sequence, termed MULTI-GATE-FSB, that is simple to implement with outstanding suppression performance for multiple solvent signals (or multiple resonances) is investigated. The sequence was tested on two water-alcohol solvent systems, and a standard lysozyme sample, with suppression of three or four regions (though it is extendable to any number of regions). The suppression of all solvent signals was possible in the alcohol-water systems tested with both long and short recycle delays and without the requirement for lengthy presaturation pulses. Such a sequence holds promise not only for LC-NMR applications and solvent suppression but for multiple suppression applications in general (e.g., analysis of impurities/components).
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Affiliation(s)
- Scott A Willis
- Nanoscale Organisation and Dynamics Group , Western Sydney University , Locked Bag 1797 , Penrith , NSW 2571 , Australia
| | - Gang Zheng
- Nanoscale Organisation and Dynamics Group , Western Sydney University , Locked Bag 1797 , Penrith , NSW 2571 , Australia
| | - Allan M Torres
- Nanoscale Organisation and Dynamics Group , Western Sydney University , Locked Bag 1797 , Penrith , NSW 2571 , Australia
| | - Timothy Stait-Gardner
- Nanoscale Organisation and Dynamics Group , Western Sydney University , Locked Bag 1797 , Penrith , NSW 2571 , Australia
| | - William S Price
- Nanoscale Organisation and Dynamics Group , Western Sydney University , Locked Bag 1797 , Penrith , NSW 2571 , Australia
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Segredo-Morales E, Martin-Pastor M, Salas A, Évora C, Concheiro A, Alvarez-Lorenzo C, Delgado A. Mobility of Water and Polymer Species and Rheological Properties of Supramolecular Polypseudorotaxane Gels Suitable for Bone Regeneration. Bioconjug Chem 2018; 29:503-516. [DOI: 10.1021/acs.bioconjchem.7b00823] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Elisabet Segredo-Morales
- Department of Chemical
Engineering and Pharmaceutical Technology, Institute of Biomedical
Technologies (ITB), Center for Biomedical Research of the Canary Islands
(CIBICAN), Universidad de La Laguna, 30200 La Laguna, Spain
| | | | - Ana Salas
- Departamente Bioquímica, Microbiología,
Biología Celular y Genética, Instituto Universitario
de Enfermedades Tropicales y Salud Pública de Canarias (IUETSPC), Universidad de La Laguna, 38207 La Laguna, Spain
| | - Carmen Évora
- Department of Chemical
Engineering and Pharmaceutical Technology, Institute of Biomedical
Technologies (ITB), Center for Biomedical Research of the Canary Islands
(CIBICAN), Universidad de La Laguna, 30200 La Laguna, Spain
| | | | | | - Araceli Delgado
- Department of Chemical
Engineering and Pharmaceutical Technology, Institute of Biomedical
Technologies (ITB), Center for Biomedical Research of the Canary Islands
(CIBICAN), Universidad de La Laguna, 30200 La Laguna, Spain
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Torres AM, Zheng G, Price WS. NOESY-WaterControl: a new NOESY sequence for the observation of under-water protein resonances. JOURNAL OF BIOMOLECULAR NMR 2017; 67:233-241. [PMID: 28271365 DOI: 10.1007/s10858-017-0100-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2016] [Accepted: 02/21/2017] [Indexed: 06/06/2023]
Abstract
Highly selective and efficient water signal suppression is indispensable in biomolecular 2D nuclear Overhauser effect spectroscopy (NOESY) experiments. However, the application of conventional water suppression schemes can cause a significant or complete loss of the biomolecular resonances at and around the water chemical shift (ω2). In this study, a new sequence, NOESY-WaterControl, was developed to address this issue. The new sequence was tested on lysozyme and bovine pancreatic trypsin inhibitor (BPTI), demonstrating its efficiency in both water suppression and, more excitingly, preserving water-proximate biomolecular resonances in ω2. The 2D NOESY maps obtained using the new sequence thus provide more information than the maps obtained with conventional water suppression, thereby lessening the number of experiments needed to complete resonance assignments of biomolecules. The 2D NOESY-WaterControl map of BPTI showed strong bound water and exchangeable proton signals in ω1 but these signals were absent in ω2, indicating the possibility of using the new sequence to discriminate bound water and exchangeable proton resonances from non-labile proton resonances with similar chemical shifts to water.
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Affiliation(s)
- Allan M Torres
- Nanoscale Organisation and Dynamics Group, School of Science and Health, Western Sydney University, Penrith, NSW, 2751, Australia
| | - Gang Zheng
- Nanoscale Organisation and Dynamics Group, School of Science and Health, Western Sydney University, Penrith, NSW, 2751, Australia.
| | - William S Price
- Nanoscale Organisation and Dynamics Group, School of Science and Health, Western Sydney University, Penrith, NSW, 2751, Australia
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