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Alkorta I, Benito MT, Elguero J, Doyagüez EG, Patterson MR, Jimeno ML, Dias HVR, Reviriego F. The use of DOSY experiments to determine the solution structures of coinage metal pyrazolates: The case of {[3,5-(CF 3 ) 2 Pz]Ag} 3. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2022; 60:442-451. [PMID: 34935188 DOI: 10.1002/mrc.5242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Revised: 12/14/2021] [Accepted: 12/16/2021] [Indexed: 06/14/2023]
Abstract
A series of DOSY experiments have been carried out to determine the solution stoichiometry of silver(I) 3,5-bis (trifluoromethyl)pyrazolate species. This compound exists as a trimer in the solid state (n = 3) but in solutions of chlorinated solvents, the DOSY data suggest the presence of a mixture of solvent stabilized monomer (n = 1) and dimer (n = 2) in equilibrium. Different approximations have been used including the Stokes-Einstein and the Stokes-Einstein-Gierer-Wirtz equations. Some methodological problems are discussed.
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Affiliation(s)
- Ibon Alkorta
- Instituto de Química Médica, CSIC, Madrid, Spain
| | - María Teresa Benito
- Servicio de Resonancia Magnética Nuclear, Centro de Química Orgánica 'Lora-Tamayo', CSIC, Madrid, Spain
| | - José Elguero
- Instituto de Química Médica, CSIC, Madrid, Spain
| | - Elisa García Doyagüez
- Servicio de Resonancia Magnética Nuclear, Centro de Química Orgánica 'Lora-Tamayo', CSIC, Madrid, Spain
| | - Monika R Patterson
- Department of Chemistry and Biochemistry, The University of Texas at Arlington, Arlington, Texas, USA
| | - María Luisa Jimeno
- Servicio de Resonancia Magnética Nuclear, Centro de Química Orgánica 'Lora-Tamayo', CSIC, Madrid, Spain
| | - H V Rasika Dias
- Department of Chemistry and Biochemistry, The University of Texas at Arlington, Arlington, Texas, USA
| | - Felipe Reviriego
- Instituto de Ciencia y Tecnología de Polímeros, CSIC, Madrid, Spain
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2
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Krivdin LB. Computational NMR of heavy nuclei involving 109Ag, 113Cd, 119Sn, 125Te, 195Pt, 199Hg, 205Tl, and 207Pb. RUSSIAN CHEMICAL REVIEWS 2021. [DOI: 10.1070/rcr4976] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Fujisawa K, Okano M, Martín-Pastor M, López-Sánchez R, Elguero J, Alkorta I. Multinuclear magnetic resonance studies of five silver(I) trinuclear pyrazolate complexes. Struct Chem 2020. [DOI: 10.1007/s11224-020-01661-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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4
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A Computational Study of Metallacycles Formed by Pyrazolate Ligands and the Coinage Metals M = Cu(I), Ag(I) and Au(I): (pzM) n for n = 2, 3, 4, 5 and 6. Comparison with Structures Reported in the Cambridge Crystallographic Data Center (CCDC). Molecules 2020; 25:molecules25215108. [PMID: 33153197 PMCID: PMC7663606 DOI: 10.3390/molecules25215108] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Revised: 10/19/2020] [Accepted: 10/21/2020] [Indexed: 12/12/2022] Open
Abstract
The structures reported in the Cambridge Structural Database (CSD) for neutral metallacycles formed by coinage metals in their valence (I) (cations) and pyrazolate anions were examined. Depending on the metal, dimers and trimers are the most common but some larger rings have also been reported, although some of the larger structures are not devoid of ambiguity. M06-2x calculations were carried out on simplified structures (without C-substituents on the pyrazolate rings) in order to facilitate a comparison with the reported X-ray structures (geometries and energies). The problems of stability of the different ring sizes were also analyzed.
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5
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Alkorta I, Elguero J, Trujillo C, Sánchez-Sanz G. Interaction between Trinuclear Regium Complexes of Pyrazolate and Anions, a Computational Study. Int J Mol Sci 2020; 21:E8036. [PMID: 33126636 PMCID: PMC7663457 DOI: 10.3390/ijms21218036] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Revised: 10/22/2020] [Accepted: 10/23/2020] [Indexed: 01/27/2023] Open
Abstract
The geometry, energy and electron density properties of the 1:1, 1:2 and 1:3 complexes between cyclic (Py-M)3 (M = Au, Ag and Cu) and halide ions (F-, Cl- and Br-) were studied using Møller Plesset (MP2) computational methods. Three different configurations were explored. In two of them, the anions interact with the metal atoms in planar and apical dispositions, while in the last configuration, the anions interact with the CH(4) group of the pyrazole. The energetic results for the 1:2 and 1:3 complexes are a combination of the specific strength of the interaction plus a repulsive component due to the charge:charge coulombic term. However, stable minima structures with dissociation barriers for the anions indicate that those complexes are stable and (Py-M)3 can hold up to three anions simultaneously. A search in the CSD confirmed the presence of (Pyrazole-Cu)3 systems with two anions interacting in apical disposition.
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Affiliation(s)
- Ibon Alkorta
- Instituto de Química Médica, CSIC, Juan de la Cierva, 3, E-28006 Madrid, Spain;
| | - José Elguero
- Instituto de Química Médica, CSIC, Juan de la Cierva, 3, E-28006 Madrid, Spain;
| | - Cristina Trujillo
- Trinity Biomedical Sciences Institute, School of Chemistry, Trinity Dublin College, D02 R590 Dublin 2, Ireland;
| | - Goar Sánchez-Sanz
- Irish Centre of High-End Computing, Grand Canal Quay, Dublin 2, Ireland
- School of Chemistry, University College Dublin, Belfield, D02 HP83 Dublin 4, Ireland
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Sánchez-Sanz G, Trujillo C, Alkorta I, Elguero J. Rivalry between Regium and Hydrogen Bonds Established within Diatomic Coinage Molecules and Lewis Acids/Bases. Chemphyschem 2020; 21:2557-2563. [PMID: 32893396 DOI: 10.1002/cphc.202000704] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Revised: 09/04/2020] [Indexed: 11/09/2022]
Abstract
A theoretical study of the complexes formed by Ag2 and Cu2 with different molecules, XH (FH, ClH, OH2 , SH2 , HCN, HNC, HCCH, NH3 and PH3 ) that can act as hydrogen-bond donors (Lewis acids) or regium-bond acceptors (Lewis bases) was carried out at the CCSD(T)/CBS computational level. The heteronuclear diatomic coinage molecules (AuAg, AuCu, and AgCu) have also been considered. With the exception of some of the hydrogen-bonded complexes with FH, the regium-bonded binary complexes are more stable. The AuAg and AuCu molecules show large dipole moments that weaken the regium bond (RB) with Au and favour those through the Ag and Cu atoms, respectively.
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Affiliation(s)
- Goar Sánchez-Sanz
- Irish Centre of High-End Computing, Grand Canal Quay, Dublin, D2, Ireland & School of Chemistry, University College Dublin, Belfield, Dublin, D4, Ireland
| | - Cristina Trujillo
- School of Chemistry, Trinity Biomedical Sciences Institute, Trinity College Dublin, 152-160 Pearse St., Dublin, D2, Ireland
| | - Ibon Alkorta
- Instituto de Química Médica, CSIC, Juan de la Cierva, 3, 28006, Madrid, Spain
| | - José Elguero
- Instituto de Química Médica, CSIC, Juan de la Cierva, 3, 28006, Madrid, Spain
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Núñez Alonso D, Pérez-Torralba M, Claramunt RM, Torralba MC, Delgado-Martínez P, Alkorta I, Elguero J, Roussel C. Regiospecific Synthesis and Structural Studies of 3,5-Dihydro-4 H-pyrido[2,3- b][1,4]diazepin-4-ones and Comparison with 1,3-Dihydro-2 H-benzo[ b][1,4]diazepin-2-ones. ACS OMEGA 2020; 5:25408-25422. [PMID: 33043221 PMCID: PMC7542844 DOI: 10.1021/acsomega.0c03843] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2020] [Accepted: 09/10/2020] [Indexed: 05/12/2023]
Abstract
Nine 3,5-dihydro-4H-pyrido[2,3-b][1,4]diazepin-4-ones (17-25), some of which contain fluoro-substituents, have been regiospecifically prepared by reaction of 2,3-diaminopyridines with ethyl aroylacetates. In two cases, open intermediates have been isolated and these are related to the reaction pathway. The X-ray crystal structure of 1-methyl-4-phenyl-3,5-dihydro-4H-pyrido[2,3-b][1,4]diazepin-4-one (23) has been solved (formula, C15H13N3O; crystal system, monoclinic; space group, C2/c). This is an asymmetric unit constituted by a single nonplanar molecule and its conformational enantiomer due to the presence of the seven-membered diazepin-2-one moiety, which introduces a certain degree of torsion in the adjacent pyridine ring. The 1H, 13C, 15N, and 19F NMR spectra were obtained and the chemical shifts, together with those of the previously published 1,3-dihydro-2H-benzo[b][1,4]diazepin-2-ones (1-16), i.e., a total of 544 values, were successfully compared with the chemical shifts calculated at the gauge invariant atomic orbital (GIAO)/Becke, three-parameter, Lee-Yang-Parr (B3LYP)/6-311++G(d,p) level. The seven-membered ring inversion barrier in 5-benzyl-2-phenyl-3,5-dihydro-4H-pyrido[2,3-b][1,4]diazepin-4-one (25) was determined and, in conjunction with the data from the literature, compared with the B3LYP/6-311++G(d,p) computed values. This allowed the determination of several structural effects. The rotation about the exocyclic N1-CR bond was also calculated and its dynamic properties were discussed.
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Affiliation(s)
- David Núñez Alonso
- Departamento
de Química Orgánica y Bio-Orgánica, Facultad
de Ciencias, UNED, Paseo Senda del Rey, 9, E-28040 Madrid, Spain
| | - Marta Pérez-Torralba
- Departamento
de Química Orgánica y Bio-Orgánica, Facultad
de Ciencias, UNED, Paseo Senda del Rey, 9, E-28040 Madrid, Spain
| | - Rosa M. Claramunt
- Departamento
de Química Orgánica y Bio-Orgánica, Facultad
de Ciencias, UNED, Paseo Senda del Rey, 9, E-28040 Madrid, Spain
| | - M. Carmen Torralba
- Departamento
de Química Inorgánica, Facultad de Ciencias Químicas, UCM, Avda. Complutense s/n, E-28040 Madrid, Spain
| | - Patricia Delgado-Martínez
- Unidad
de Difracción de Rayos X−CAI Técnicas Físicas
y Químicas, Facultad de Ciencias Químicas, UCM, Avda. Complutense s/n, E-28040 Madrid, Spain
| | - Ibon Alkorta
- Instituto
de Química Médica, CSIC, Juan de la Cierva, 3, E-28006 Madrid, Spain
| | - José Elguero
- Instituto
de Química Médica, CSIC, Juan de la Cierva, 3, E-28006 Madrid, Spain
| | - Christian Roussel
- Aix-Marseille
Univ., CNRS, Centrale Marseille, iSm2, 13397 Marseille, France
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Regium Bonds between Silver(I) Pyrazolates Dinuclear Complexes and Lewis Bases (N2, OH2, NCH, SH2, NH3, PH3, CO and CNH). CRYSTALS 2020. [DOI: 10.3390/cryst10020137] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
A theoretical study and Cambridge Structural Database (CSD) search of dinuclear Ag(I) pyrazolates interactions with Lewis bases were carried out and the effect of the substituents and ligands on the structure and on the aromaticity were analyzed. A relationship between the intramolecular Ag–Ag distance and stability was found in the unsubstituted system, which indicates a destabilization at longer distances compensated by ligands upon complexation. It was also observed that the asymmetrical interaction with phosphines as ligands increases the Ag–Ag distance. This increase is dramatically higher when two simultaneous PH3 ligands are taken into account. The calculated 109Ag chemical shielding shows variation up to 1200 ppm due to the complexation. Calculations showed that six-membered rings possessed non-aromatic character while pyrazole rings do not change their aromatic character significantly upon complexation.
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Dias HVR, Palehepitiya Gamage CS, Jayaratna NB, Hettiarachchi CV. Mixed ligand complexes of silver( i) supported by highly fluorinated pyrazolates, and chelating and bridging N-heterocycles. NEW J CHEM 2020. [DOI: 10.1039/d0nj04007j] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A range of silver complexes featuring all nitrogen coordination environments involving pyrazolates and chelating and non-chelating bidentate N-heterocycles are reported.
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Affiliation(s)
- H. V. Rasika Dias
- Department of Chemistry and Biochemistry
- University of Texas at Arlington
- Arlington
- USA
| | | | - Naleen B. Jayaratna
- Department of Chemistry and Biochemistry
- University of Texas at Arlington
- Arlington
- USA
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10
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Lakhi JS, Patterson MR, Dias HVR. Coinage metal metallacycles involving a fluorinated 3,5-diarylpyrazolate. NEW J CHEM 2020. [DOI: 10.1039/d0nj03744c] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Photoluminescent, trinuclear, coinage metal pyrazolates have been isolated using a fluorinated diaryl-pyrazolate.
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Affiliation(s)
- Jaspreet S. Lakhi
- Department of Chemistry and Biochemistry
- University of Texas at Arlington
- Arlington
- USA
| | - Monika R. Patterson
- Department of Chemistry and Biochemistry
- University of Texas at Arlington
- Arlington
- USA
| | - H. V. Rasika Dias
- Department of Chemistry and Biochemistry
- University of Texas at Arlington
- Arlington
- USA
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