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Gutierrez A, Mullen M, Xiao D, Jang A, Froelich T, Garwood M, Haupt J. Reducing the Complexity of Model-Based MRI Reconstructions via Sparsification. IEEE TRANSACTIONS ON MEDICAL IMAGING 2021; 40:2477-2486. [PMID: 33999816 PMCID: PMC8569912 DOI: 10.1109/tmi.2021.3081013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Model-based reconstruction methods have emerged as a powerful alternative to classical Fourier-based MRI techniques, largely because of their ability to explicitly model (and therefore, potentially overcome) moderate field inhomogeneities, streamline reconstruction from non-Cartesian sampling, and even allow for the use of custom designed non-Fourier encoding methods. Their application in such scenarios, however, often comes with a substantial increase in computational cost, owing to the fact that the corresponding forward model in such settings no longer possesses a direct Fourier Transform based implementation. This paper introduces an algorithmic framework designed to reduce the computational burden associated with model-based MRI reconstruction tasks. The key innovation is the strategic sparsification of the corresponding forward operators for these models, giving rise to approximations of the forward models (and their adjoints) that admit low computational complexity application. This enables overall a reduced computational complexity application of popular iterative first-order reconstruction methods for these reconstruction tasks. Computational results obtained on both synthetic and experimental data illustrate the viability and efficiency of the approach.
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He X, Auerbach EJ, Garwood M, Kobayashi N, Wu X, Metzger GJ. Parallel transmit optimized 3D composite adiabatic spectral-spatial pulse for spectroscopy. Magn Reson Med 2021; 86:17-32. [PMID: 33497006 PMCID: PMC8545499 DOI: 10.1002/mrm.28682] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Revised: 12/22/2020] [Accepted: 12/23/2020] [Indexed: 01/05/2023]
Abstract
PURPOSE To develop a 3D composite adiabatic spectral-spatial pulse for refocusing in spin-echo spectroscopy acquisitions and to compare its performance against standard acquisition methods. METHODS A 3D composite adiabatic pulse was designed by modulating a train of parallel transmit-optimized 2D subpulses with an adiabatic envelope. The spatial and spectral profiles were simulated and validated by experiments to demonstrate the feasibility of the design in both single and double spin-echo spectroscopy acquisitions. Phantom and in vivo studies were performed to evaluate the pulse performance and compared with semi-LASER with respect to localization performance, sequence timing, signal suppression, and specific absorption rate. RESULTS Simultaneous 2D spatial localization with water and lipid suppression was achieved with the designed refocusing pulse, allowing high-quality spectra to be acquired with shorter minimum TE/TR, reduced SAR, as well as adaptation to spatially varying B0 and B 1 + field inhomogeneities in both prostate and brain studies. CONCLUSION The proposed composite pulse can serve as a more SAR efficient alternative to conventional localization methods such as semi-LASER at ultrahigh field for spin echo-based spectroscopy studies. Subpulse parallel-transmit optimization provides the flexibility to manage the tradeoff among multiple design criteria to accommodate different field strengths and applications.
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Affiliation(s)
- Xiaoxuan He
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota, United States
| | - Edward J. Auerbach
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota, United States
| | - Michael Garwood
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota, United States
| | - Naoharu Kobayashi
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota, United States
| | - Xiaoping Wu
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota, United States
| | - Gregory J. Metzger
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota, United States
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Froelich T, Mullen M, Garwood M. MRI exploiting frequency-modulated pulses and their nonlinear phase. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2020; 318:106779. [PMID: 32917297 DOI: 10.1016/j.jmr.2020.106779] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 06/15/2020] [Accepted: 06/24/2020] [Indexed: 06/11/2023]
Abstract
Frequency-modulated (FM) pulses can provide several advantages over conventional amplitude-modulated pulses in the field of MRI; however, the manner in which spins are manipulated imprints a quadratic phase on the resulting magnetization. Historically this was considered a hindrance and slowed the widespread adoption of FM pulses. This article seeks to provide a historical perspective of the different techniques that researchers have used to exploit the benefits of FM pulses and to compensate for the nonlinear phase created by this class of pulses in MRI. Expanding on existing techniques, a new method of phase compensation is presented that utilizes nonlinear gradients to mitigate the undesirable phase imparted by this class of pulses.
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Affiliation(s)
- Taylor Froelich
- Center for Magnetic Resonance Research and Department of Radiology, University of Minnesota, Minneapolis, MN, USA.
| | - Michael Mullen
- Center for Magnetic Resonance Research and Department of Radiology, University of Minnesota, Minneapolis, MN, USA.
| | - Michael Garwood
- Center for Magnetic Resonance Research and Department of Radiology, University of Minnesota, Minneapolis, MN, USA.
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He X, Ertürk MA, Grant A, Wu X, Lagore RL, DelaBarre L, Eryaman Y, Adriany G, Auerbach EJ, Van de Moortele PF, Uğurbil K, Metzger GJ. First in-vivo human imaging at 10.5T: Imaging the body at 447 MHz. Magn Reson Med 2019; 84:289-303. [PMID: 31846121 DOI: 10.1002/mrm.28131] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Revised: 11/25/2019] [Accepted: 11/26/2019] [Indexed: 01/31/2023]
Abstract
PURPOSE To investigate the feasibility of imaging the human torso and to evaluate the performance of several radiofrequency (RF) management strategies at 10.5T. METHODS Healthy volunteers were imaged on a 10.5T whole-body scanner in multiple target anatomies, including the prostate, hip, kidney, liver, and heart. Phase-only shimming and spoke pulses were used to demonstrate their performance in managing the B 1 + inhomogeneity present at 447 MHz. Imaging protocols included both qualitative and quantitative acquisitions to show the feasibility of imaging with different contrasts. RESULTS High-quality images were acquired and demonstrated excellent overall contrast and signal-to-noise ratio. The experimental results matched well with predictions and suggested good translational capabilities of the RF management strategies previously developed at 7T. Phase-only shimming provided increased efficiency, but showed pronounced limitations in homogeneity, demonstrating the need for the increased degrees of freedom made possible through single- and multispoke RF pulse design. CONCLUSION The first in-vivo human imaging was successfully performed at 10.5T using previously developed RF management strategies. Further improvement in RF coils, transmit chain, and full integration of parallel transmit functionality are needed to fully realize the benefits of 10.5T.
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Affiliation(s)
- Xiaoxuan He
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota
| | - M Arcan Ertürk
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota
| | - Andrea Grant
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota
| | - Xiaoping Wu
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota
| | - Russell L Lagore
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota
| | - Lance DelaBarre
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota
| | - Yiğitcan Eryaman
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota
| | - Gregor Adriany
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota
| | - Eddie J Auerbach
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota
| | | | - Kâmil Uğurbil
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota
| | - Gregory J Metzger
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota
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Mullen M, Gutierrez A, Kobayashi N, Haupt J, Garwood M. Accelerated imaging with segmented 2D pulses using parallel imaging and virtual coils. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2019; 305:185-194. [PMID: 31302513 PMCID: PMC6711164 DOI: 10.1016/j.jmr.2019.07.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Revised: 07/02/2019] [Accepted: 07/03/2019] [Indexed: 06/10/2023]
Abstract
Large magnetic field inhomogeneity can be a significant cause of spatial flip-angle variation when using ordinary, limited-bandwidth RF pulses. Multidimensional RF pulses are particularly sensitive to inhomogeneity due to their extended pulse length, which decreases their bandwidth. Previously, it was shown that, by breaking a 2D pulse into multiple undersampled k-space segments, the excitation bandwidth can be increased at the expense of increased imaging time. The present study shows how this increased imaging time can be offset by undersampling acquisition k-space in a phase-encoded dimension that is in the direction of excitation segmentation. Data from each segment are viewed as originating from "virtual receive coils" rather than multiple physical coils. The undersampled data are reconstructed using parallel imaging techniques (e.g. as in GRAPPA). The method was tested in vivo with brain imaging at both 3 T and 4 T, and used in conjunction with a 32-channel head coil and conventional GRAPPA on the 3 T data. Relationships with existing techniques and future applications are discussed.
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Affiliation(s)
- Michael Mullen
- Center for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, MN, USA; School of Physics and Astronomy, University of Minnesota, Minneapolis, MN, USA
| | | | - Naoharu Kobayashi
- Center for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, MN, USA
| | - Jarvis Haupt
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN, USA
| | - Michael Garwood
- Center for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, MN, USA.
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Mullen M, Kobayashi N, Garwood M. Two-dimensional frequency-swept pulse with resilience to both B 1 and B 0 inhomogeneity. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2019; 299:93-100. [PMID: 30590352 PMCID: PMC6369020 DOI: 10.1016/j.jmr.2018.12.017] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2018] [Revised: 12/07/2018] [Accepted: 12/17/2018] [Indexed: 06/09/2023]
Abstract
Applications of multidimensional spatially-selective pulses are sometimes limited by their long pulse durations resulting from the need to execute a modulated gradient waveform in concert with RF transmission. Here, we introduce a method to design two-dimensional selective adiabatic pulses using a Cartesian k-space trajectory. The full pulse can be sampled using various undersampled segments to create a multidimensional pulse resilient to large off-resonances. Moreover, the pulse can be designed to be resilient to B1+ inhomogeneity. Experimental demonstrations of fully segmented and single-shot k-space sampling patterns are presented.
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Affiliation(s)
- Michael Mullen
- Center for Magnetic Resonance Research and Department of Radiology, University of Minnesota, Minneapolis, MN, USA; School of Physics and Astronomy, University of Minnesota, Minneapolis, MN, USA
| | - Naoharu Kobayashi
- Center for Magnetic Resonance Research and Department of Radiology, University of Minnesota, Minneapolis, MN, USA
| | - Michael Garwood
- Center for Magnetic Resonance Research and Department of Radiology, University of Minnesota, Minneapolis, MN, USA.
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Garwood M, Uğurbil K. RF pulse methods for use with surface coils: Frequency-modulated pulses and parallel transmission. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2018; 291:84-93. [PMID: 29705035 PMCID: PMC5943143 DOI: 10.1016/j.jmr.2018.01.012] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2018] [Accepted: 01/24/2018] [Indexed: 06/08/2023]
Abstract
The first use of a surface coil to obtain a 31P NMR spectrum from an intact rat by Ackerman and colleagues initiated a revolution in magnetic resonance imaging (MRI) and spectroscopy (MRS). Today, we take it for granted that one can detect signals in regions external to an RF coil; at the time, however, this concept was most unusual. In the approximately four decade long period since its introduction, this simple idea gave birth to an increasing number of innovations that has led to transformative changes in the way we collect data in an in vivo magnetic resonance experiment, particularly with MRI of humans. These innovations include spatial localization and/or encoding based on the non-uniform B1 field generated by the surface coil, leading to new spectroscopic localization methods, image acceleration, and unique RF pulses that deal with B1 inhomogeneities and even reduce power deposition. Without the surface coil, many of the major technological advances that define the extraordinary success of MRI in clinical diagnosis and in biomedical research, as exemplified by projects like the Human Connectome Project, would not have been possible.
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Affiliation(s)
- Michael Garwood
- Center for Magnetic Resonance Research and Department of Radiology, University of Minnesota, Minneapolis, MN 55455 USA.
| | - Kamil Uğurbil
- Center for Magnetic Resonance Research and Department of Radiology, University of Minnesota, Minneapolis, MN 55455 USA
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