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Gras V, Poser BA, Wu X, Tomi-Tricot R, Boulant N. Optimizing BOLD sensitivity in the 7T Human Connectome Project resting-state fMRI protocol using plug-and-play parallel transmission. Neuroimage 2019; 195:1-10. [DOI: 10.1016/j.neuroimage.2019.03.040] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2019] [Revised: 02/21/2019] [Accepted: 03/19/2019] [Indexed: 12/18/2022] Open
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Pendse M, Stara R, Khalighi MM, Rutt B. IMPULSE: A scalable algorithm for design of minimum specific absorption rate parallel transmit RF pulses. Magn Reson Med 2019; 81:2808-2822. [PMID: 30426583 PMCID: PMC6372346 DOI: 10.1002/mrm.27589] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Revised: 09/14/2018] [Accepted: 10/10/2018] [Indexed: 12/27/2022]
Abstract
PURPOSE Managing local specific absorption rate (SAR) in parallel transmission requires ensuring that the peak SAR over a large number of voxels (> 10 5 ) is below the regulatory limit. The safety risk to the patient depends on cumulative (not instantaneous) SAR thus making a joint design of all RF pulses in a sequence desirable. We propose the Iterative Minimization Procedure with Uncompressed Local SAR Estimate (IMPULSE), an efficient optimization formulation and algorithm that can handle uncompressed SAR matrices and optimize pulses for all slices jointly within a practical time frame. THEORY AND METHODS IMPULSE optimizes parallel transmit pulses for small-tip-angle slice selective excitation to minimize a single cost function incorporating multiple quantities (local SAR, global SAR, and per-channel power) averaged over the entire multislice scan subject to a strict constraint on excitation accuracy. Pulses for an 8-channel 7T head coil were designed with IMPULSE and compared with pulses designed using generic optimization algorithms and VOPs to assess the computation time and SAR performance benefits. RESULTS IMPULSE achieves lower SAR and shorter computation time compared with a VOP approach. Compared with the generic sequential quadratic programming algorithm, computation time is reduced by a factor of 5-6 by using IMPULSE. Using as many as 6 million local SAR terms, up to 120 slices can be designed jointly with IMPULSE within 45 s. CONCLUSIONS IMPULSE can handle significantly larger number of SAR matrices and slices than conventional optimization algorithms, enabling the use of uncompressed or partially compressed SAR matrices to design pulses for a multislice scan in a practical time frame.
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Affiliation(s)
- Mihir Pendse
- Stanford University Department of Radiology, 1201 Welch Road Stanford, CA, 94305-5105, USA
| | - Riccardo Stara
- Stanford University Department of Radiology, 1201 Welch Road Stanford, CA, 94305-5105, USA
| | | | - Brian Rutt
- Stanford University Department of Radiology, 1201 Welch Road Stanford, CA, 94305-5105, USA
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Wu X, Auerbach EJ, Vu AT, Moeller S, Van de Moortele PF, Yacoub E, Uğurbil K. Human Connectome Project-style resting-state functional MRI at 7 Tesla using radiofrequency parallel transmission. Neuroimage 2018; 184:396-408. [PMID: 30237033 DOI: 10.1016/j.neuroimage.2018.09.038] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2018] [Revised: 09/13/2018] [Accepted: 09/15/2018] [Indexed: 01/16/2023] Open
Abstract
We investigate the utility of radiofrequency (RF) parallel transmission (pTx) for whole-brain resting-state functional MRI (rfMRI) acquisition at 7 Tesla (7T). To this end, Human Connectome Project (HCP)-style data acquisitions were chosen as a showcase example. Five healthy subjects were scanned in pTx and single-channel transmit (1Tx) modes. The pTx data were acquired using a prototype 16-channel transmit system and a commercially available Nova 8-channel transmit 32-channel receive RF head coil. Additionally, pTx single-spoke multiband (MB) pulses were designed to image sagittal slices. HCP-style 7T rfMRI data (1.6-mm isotropic resolution, 5-fold slice and 2-fold in-plane acceleration, 3600 image volumes and ∼ 1-h scan) were acquired with pTx and the results were compared to those acquired with the original 7T HCP rfMRI protocol. The use of pTx significantly improved flip-angle uniformity across the brain, with coefficient of variation (i.e., std/mean) of whole-brain flip-angle distribution reduced on average by ∼39%. This in turn yielded ∼17% increase in group temporal SNR (tSNR) as averaged across the entire brain and ∼10% increase in group functional contrast-to-noise ratio (fCNR) as averaged across the grayordinate space (including cortical surfaces and subcortical voxels). Furthermore, when placing a seed in either the posterior parietal lobe or putamen to estimate seed-based dense connectome, the increase in fCNR was observed to translate into stronger correlation of the seed with the rest of the grayordinate space. We have demonstrated the utility of pTx for slice-accelerated high-resolution whole-brain rfMRI at 7T; as compared to current state-of-the-art, the use of pTx improves flip-angle uniformity, increases tSNR, enhances fCNR and strengthens functional connectivity estimation.
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Affiliation(s)
- Xiaoping Wu
- Center for Magnetic Resonance Research, Radiology, Medical School, University of Minnesota, Minneapolis, MN, United States.
| | - Edward J Auerbach
- Center for Magnetic Resonance Research, Radiology, Medical School, University of Minnesota, Minneapolis, MN, United States
| | - An T Vu
- Center for Imaging of Neurodegenerative Diseases, VA Healthcare System, San Francisco, CA, United States
| | - Steen Moeller
- Center for Magnetic Resonance Research, Radiology, Medical School, University of Minnesota, Minneapolis, MN, United States
| | | | - Essa Yacoub
- Center for Magnetic Resonance Research, Radiology, Medical School, University of Minnesota, Minneapolis, MN, United States
| | - Kâmil Uğurbil
- Center for Magnetic Resonance Research, Radiology, Medical School, University of Minnesota, Minneapolis, MN, United States
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Wu X, Auerbach EJ, Vu AT, Moeller S, Lenglet C, Schmitter S, Van de Moortele PF, Yacoub E, Uğurbil K. High-resolution whole-brain diffusion MRI at 7T using radiofrequency parallel transmission. Magn Reson Med 2018; 80:1857-1870. [PMID: 29603381 DOI: 10.1002/mrm.27189] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2017] [Revised: 02/20/2018] [Accepted: 03/02/2018] [Indexed: 12/21/2022]
Abstract
PURPOSE Investigating the utility of RF parallel transmission (pTx) for Human Connectome Project (HCP)-style whole-brain diffusion MRI (dMRI) data at 7 Tesla (7T). METHODS Healthy subjects were scanned in pTx and single-transmit (1Tx) modes. Multiband (MB), single-spoke pTx pulses were designed to image sagittal slices. HCP-style dMRI data (i.e., 1.05-mm resolutions, MB2, b-values = 1000/2000 s/mm2 , 286 images and 40-min scan) and data with higher accelerations (MB3 and MB4) were acquired with pTx. RESULTS pTx significantly improved flip-angle detected signal uniformity across the brain, yielding ∼19% increase in temporal SNR (tSNR) averaged over the brain relative to 1Tx. This allowed significantly enhanced estimation of multiple fiber orientations (with ∼21% decrease in dispersion) in HCP-style 7T dMRI datasets. Additionally, pTx pulses achieved substantially lower power deposition, permitting higher accelerations, enabling collection of the same data in 2/3 and 1/2 the scan time or of more data in the same scan time. CONCLUSION pTx provides a solution to two major limitations for slice-accelerated high-resolution whole-brain dMRI at 7T; it improves flip-angle uniformity, and enables higher slice acceleration relative to current state-of-the-art. As such, pTx provides significant advantages for rapid acquisition of high-quality, high-resolution truly whole-brain dMRI data.
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Affiliation(s)
- Xiaoping Wu
- Center for Magnetic Resonance Research, Radiology, Medical School, University of Minnesota, Minneapolis, Minnesota
| | - Edward J Auerbach
- Center for Magnetic Resonance Research, Radiology, Medical School, University of Minnesota, Minneapolis, Minnesota
| | - An T Vu
- Center for Imaging of Neurodegenerative Diseases, VA Healthcare System, San Francisco, California
| | - Steen Moeller
- Center for Magnetic Resonance Research, Radiology, Medical School, University of Minnesota, Minneapolis, Minnesota
| | - Christophe Lenglet
- Center for Magnetic Resonance Research, Radiology, Medical School, University of Minnesota, Minneapolis, Minnesota
| | - Sebastian Schmitter
- Center for Magnetic Resonance Research, Radiology, Medical School, University of Minnesota, Minneapolis, Minnesota.,Physikalisch-Technische Bundesanstalt, Berlin, Germany
| | | | - Essa Yacoub
- Center for Magnetic Resonance Research, Radiology, Medical School, University of Minnesota, Minneapolis, Minnesota
| | - Kâmil Uğurbil
- Center for Magnetic Resonance Research, Radiology, Medical School, University of Minnesota, Minneapolis, Minnesota
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Gras V, Mauconduit F, Vignaud A, Amadon A, Le Bihan D, Stöcker T, Boulant N. Design of universal parallel-transmit refocusing k T -point pulses and application to 3D T 2 -weighted imaging at 7T. Magn Reson Med 2017; 80:53-65. [PMID: 29193250 DOI: 10.1002/mrm.27001] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2017] [Revised: 10/02/2017] [Accepted: 10/16/2017] [Indexed: 12/18/2022]
Abstract
PURPOSE T2 -weighted sequences are particularly sensitive to the radiofrequency (RF) field inhomogeneity problem at ultra-high-field because of the errors accumulated by the imperfections of the train of refocusing pulses. As parallel transmission (pTx) has proved particularly useful to counteract RF heterogeneities, universal pulses were recently demonstrated to save precious time and computational efforts by skipping B1 calibration and online RF pulse tailoring. Here, we report a universal RF pulse design for non-selective refocusing pulses to mitigate the RF inhomogeneity problem at 7T in turbo spin-echo sequences with variable flip angles. METHOD Average Hamiltonian theory was used to synthetize a single non-selective refocusing pulse with pTx while optimizing its scaling properties in the presence of static field offsets. The design was performed under explicit power and specific absorption rate constraints on a database of 10 subjects using a 8Tx-32Rx commercial coil at 7T. To validate the proposed design, the RF pulses were tested in simulation and applied in vivo on 5 additional test subjects. RESULTS The root-mean-square rotation angle error (RA-NRMSE) evaluation and experimental data demonstrated great improvement with the proposed universal pulses (RA-NRMSE ∼8%) compared to the standard circularly polarized mode of excitation (RA-NRMSE ∼26%). CONCLUSION This work further completes the spectrum of 3D universal pulses to mitigate RF field inhomogeneity throughout all 3D MRI sequences without any pTx calibration. The approach returns a single pulse that can be scaled to match the desired flip angle train, thereby increasing the modularity of the proposed plug and play approach. Magn Reson Med 80:53-65, 2018. © 2017 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- Vincent Gras
- CEA, DRF, Joliot, NeuroSpin, Unirs, CEA Saclay, Gif sur Yvette, France
| | | | - Alexandre Vignaud
- CEA, DRF, Joliot, NeuroSpin, Unirs, CEA Saclay, Gif sur Yvette, France
| | - Alexis Amadon
- CEA, DRF, Joliot, NeuroSpin, Unirs, CEA Saclay, Gif sur Yvette, France
| | - Denis Le Bihan
- CEA, DRF, Joliot, NeuroSpin, Unirs, CEA Saclay, Gif sur Yvette, France
| | - Tony Stöcker
- German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany
| | - Nicolas Boulant
- CEA, DRF, Joliot, NeuroSpin, Unirs, CEA Saclay, Gif sur Yvette, France
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Gras V, Boland M, Vignaud A, Ferrand G, Amadon A, Mauconduit F, Le Bihan D, Stöcker T, Boulant N. Homogeneous non-selective and slice-selective parallel-transmit excitations at 7 Tesla with universal pulses: A validation study on two commercial RF coils. PLoS One 2017; 12:e0183562. [PMID: 28827835 PMCID: PMC5565195 DOI: 10.1371/journal.pone.0183562] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2017] [Accepted: 08/07/2017] [Indexed: 11/21/2022] Open
Abstract
Parallel transmission (pTx) technology, despite its great potential to mitigate the transmit field inhomogeneity problem in magnetic resonance imaging at ultra-high field (UHF), suffers from a cumbersome calibration procedure, thereby making the approach problematic for routine use. The purpose of this work is to demonstrate on two different 7T systems respectively equipped with 8-transmit-channel RF coils from two different suppliers (Rapid-Biomed and Nova Medical), the benefit of so-called universal pulses (UP), optimized to produce uniform excitations in the brain in a population of adults and making unnecessary the calibration procedures mentioned above. Non-selective and slice-selective UPs were designed to return homogeneous excitation profiles throughout the brain simultaneously on a group of ten subjects, which then were subsequently tested on ten additional volunteers in magnetization prepared rapid gradient echo (MPRAGE) and multi-slice gradient echo (2D GRE) protocols. The results were additionally compared experimentally with the standard non-pTx circularly-polarized (CP) mode, and in simulation with subject-specific tailored excitations. For both pulse types and both coils, the UP mode returned a better signal and contrast homogeneity than the CP mode. Retrospective analysis of the flip angle (FA) suggests that the FA deviation from the nominal FA on average over a healthy adult population does not exceed 11% with the calibration-free parallel-transmit pulses whereas it goes beyond 25% with the CP mode. As a result the universal pulses designed in this work confirm their relevance in 3D and 2D protocols with commercially available equipment. Plug-and-play pTx implementations henceforth become accessible to exploit with more flexibility the potential of UHF for brain imaging.
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Affiliation(s)
- Vincent Gras
- CEA/DRF/Joliot/NeuroSpin/Unirs, Gif sur Yvette, France
| | - Markus Boland
- German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany
| | | | | | - Alexis Amadon
- CEA/DRF/Joliot/NeuroSpin/Unirs, Gif sur Yvette, France
| | | | | | - Tony Stöcker
- German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany
| | - Nicolas Boulant
- CEA/DRF/Joliot/NeuroSpin/Unirs, Gif sur Yvette, France
- * E-mail:
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Gras V, Vignaud A, Amadon A, Mauconduit F, Le Bihan D, Boulant N. In vivo demonstration of whole-brain multislice multispoke parallel transmit radiofrequency pulse design in the small and large flip angle regimes at 7 Tesla. Magn Reson Med 2016; 78:1009-1019. [PMID: 27774653 DOI: 10.1002/mrm.26491] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2016] [Revised: 09/07/2016] [Accepted: 09/12/2016] [Indexed: 11/07/2022]
Abstract
PURPOSE A multispoke specific absorption rate (SAR) -aware pulse design approach for homogeneous multiple-slice small and large flip angle (FA) excitations with parallel transmission is proposed. The approach aims at optimizing in a slice-specific manner the spokes locations and radiofrequency pulses. METHODS The problem is posed as a set of slice-specific magnitude-least-squares problems, linked together by hardware and SAR constraints, and solved jointly using an active-set algorithm. Average Hamiltonian theory is exploited in the large FA case to greatly reduce the computational burden. The approach is validated numerically by means of simulations and experimentally on two volunteers at 7 Tesla through application of a high-resolution T2*-weighted brain imaging protocol. RESULTS The optimization of up to 1300 variables under 745 explicit constraints could be performed in less than 1 and 4 min for the small and large FA cases, respectively. The joint design proves valuable for SAR demanding protocols. Compared with the conventional circularly polarized mode, the designed pulses increased the signal by more than 40% in 70% of the voxels. CONCLUSION The B1+ inhomogeneity problem was mitigated efficiently in a multislice near whole-brain coverage protocol in the small and large FA regimes using a rapid slice-specific pulse design algorithm where the pulses were optimized jointly. Magn Reson Med 78:1009-1019, 2017. © 2016 International Society for Magnetic Resonance in Medicine.
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