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Deng Z, Wang L, Kuai Z, Chen Q, Ye C, Scott AD, Nielles-Vallespin S, Zhu Y. Deep learning method with integrated invertible wavelet scattering for improving the quality of in vivocardiac DTI. Phys Med Biol 2024; 69:185005. [PMID: 39142339 DOI: 10.1088/1361-6560/ad6f6a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Accepted: 08/14/2024] [Indexed: 08/16/2024]
Abstract
Objective.Respiratory motion, cardiac motion and inherently low signal-to-noise ratio (SNR) are major limitations ofin vivocardiac diffusion tensor imaging (DTI). We propose a novel enhancement method that uses unsupervised learning based invertible wavelet scattering (IWS) to improve the quality ofin vivocardiac DTI.Approach.Our method starts by extracting nearly transformation-invariant features from multiple cardiac diffusion-weighted (DW) image acquisitions using multi-scale wavelet scattering (WS). Then, the relationship between the WS coefficients and DW images is learned through a multi-scale encoder and a decoder network. Using the trained encoder, the deep features of WS coefficients of multiple DW image acquisitions are further extracted and then fused using an average rule. Finally, using the fused WS features and trained decoder, the enhanced DW images are derived.Main result.We evaluate the performance of the proposed method by comparing it with several methods on threein vivocardiac DTI datasets in terms of SNR, contrast to noise ratio (CNR), fractional anisotropy (FA), mean diffusivity (MD) and helix angle (HA). Comparing against the best comparison method, SNR/CNR of diastolic, gastric peristalsis influenced, and end-systolic DW images were improved by 1%/16%, 5%/6%, and 56%/30%, respectively. The approach also yielded consistent FA and MD values and more coherent helical fiber structures than the comparison methods used in this work.Significance.The ablation results verify that using the transformation-invariant and noise-robust wavelet scattering features enables us to effectively explore the useful information from the limited data, providing a potential mean to alleviate the dependence of the fusion results on the number of repeated acquisitions, which is beneficial for dealing with the issues of noise and residual motion simultaneously and therefore improving the quality ofinvivocardiac DTI. Code can be found inhttps://github.com/strawberry1996/WS-MCNN.
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Affiliation(s)
- Zeyu Deng
- Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province, College of Computer Science and Technology, State Key Laboratory of Public Big Data, Guizhou University, Guiyang, People's Republic of China
| | - Lihui Wang
- Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province, College of Computer Science and Technology, State Key Laboratory of Public Big Data, Guizhou University, Guiyang, People's Republic of China
| | - Zixiang Kuai
- Imaging Center, Harbin Medical University Cancer Hospital, Harbin, People's Republic of China
| | - Qijian Chen
- Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province, College of Computer Science and Technology, State Key Laboratory of Public Big Data, Guizhou University, Guiyang, People's Republic of China
| | - Chen Ye
- Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province, College of Computer Science and Technology, State Key Laboratory of Public Big Data, Guizhou University, Guiyang, People's Republic of China
| | - Andrew D Scott
- CMR Unit, Royal Brompton Hospital, Guy's and St Thomas' NHS Foundation Trust, London, United Kingdom
- National Heart and Lung Institute, Imperial College London, London, United Kingdom
| | - Sonia Nielles-Vallespin
- CMR Unit, Royal Brompton Hospital, Guy's and St Thomas' NHS Foundation Trust, London, United Kingdom
- National Heart and Lung Institute, Imperial College London, London, United Kingdom
| | - Yuemin Zhu
- University Lyon, INSA Lyon, CNRS, Inserm, IRP Metislab CREATIS UMR5220, U1206, Lyon 69621, France
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Finkelstein AJ, Liao C, Cao X, Mani M, Schifitto G, Zhong J. High-fidelity intravoxel incoherent motion parameter mapping using locally low-rank and subspace modeling. Neuroimage 2024; 292:120601. [PMID: 38588832 DOI: 10.1016/j.neuroimage.2024.120601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Revised: 03/23/2024] [Accepted: 04/01/2024] [Indexed: 04/10/2024] Open
Abstract
PURPOSE Intravoxel incoherent motion (IVIM) is a quantitative magnetic resonance imaging (MRI) method used to quantify perfusion properties of tissue non-invasively without contrast. However, clinical applications are limited by unreliable parameter estimates, particularly for the perfusion fraction (f) and pseudodiffusion coefficient (D*). This study aims to develop a high-fidelity reconstruction for reliable estimation of IVIM parameters. The proposed method is versatile and amenable to various acquisition schemes and fitting methods. METHODS To address current challenges with IVIM, we adapted several advanced reconstruction techniques. We used a low-rank approximation of IVIM images and temporal subspace modeling to constrain the magnetization dynamics of the bi-exponential diffusion signal decay. In addition, motion-induced phase variations were corrected between diffusion directions and b-values, facilitating the use of high SNR real-valued diffusion data. The proposed method was evaluated in simulations and in vivo brain acquisitions in six healthy subjects and six individuals with a history of SARS-CoV-2 infection and compared with the conventionally reconstructed magnitude data. Following reconstruction, IVIM parameters were estimated voxel-wise. RESULTS Our proposed method reduced noise contamination in simulations, resulting in a 60%, 58.9%, and 83.9% reduction in the NRMSE for D, f, and D*, respectively, compared to the conventional reconstruction. In vivo, anisotropic properties of D, f, and D* were preserved with the proposed method, highlighting microvascular differences in gray matter between individuals with a history of COVID-19 and those without (p = 0.0210), which wasn't observed with the conventional reconstruction. CONCLUSION The proposed method yielded a more reliable estimation of IVIM parameters with less noise than the conventional reconstruction. Further, the proposed method preserved anisotropic properties of IVIM parameter estimates and demonstrated differences in microvascular perfusion in COVID-affected subjects, which weren't observed with conventional reconstruction methods.
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Affiliation(s)
- Alan J Finkelstein
- Department of Biomedical Engineering, University of Rochester, Rochester, NY, USA
| | - Congyu Liao
- Department of Radiology, Stanford University, Stanford, CA, USA
| | - Xiaozhi Cao
- Department of Radiology, Stanford University, Stanford, CA, USA
| | - Merry Mani
- Department of Radiology, University of Iowa, Iowa City, IA, USA
| | - Giovanni Schifitto
- Department of Electrical and Computer Engineering, University of Rochester, Rochester, NY, USA; Department of Neurology, University of Rochester, Rochester, NY, USA; Department of Imaging Sciences, University of Rochester, Rochester, NY, USA
| | - Jianhui Zhong
- Department of Biomedical Engineering, University of Rochester, Rochester, NY, USA; Department of Imaging Sciences, University of Rochester, Rochester, NY, USA; Department of Physics and Astronomy, University of Rochester, Rochester, NY, USA.
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Xiang X, Lin X, Zhang B, Lin C, Lei J, Guo S, Zhao S. Microvascular Dysfunction Associates With Outcomes in Hypertrophic Cardiomyopathy: Insights From the Intravoxel Incoherent Motion MRI. J Magn Reson Imaging 2022; 57:1766-1775. [PMID: 36200627 DOI: 10.1002/jmri.28450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Revised: 09/13/2022] [Accepted: 09/15/2022] [Indexed: 11/06/2022] Open
Abstract
BACKGROUND Although intravoxel incoherent motion (IVIM) MRI has emerged as an in vivo marker of tissue diffusion and perfusion, its prognostic value in patients with hypertrophic cardiomyopathy (HCM) remains unclear. PURPOSE To investigate whether IVIM-MRI derived parameters are associated with outcomes in patients with HCM. STUDY TYPE Prospective cohort. SUBJECTS A total of 112 patients (51.72 ± 17.13 years) with suspected or known HCM. FIELD STRENGTH/SEQUENCE Single-shot echo planar IVIM imaging, balanced steady-state free precession, and phase-sensitive inversion-recovery late gadolinium enhancement (LGE) sequences at 3 T. ASSESSMENT All patients were followed up of 29.3 ± 12.3 months for combined major adverse cardiac events (MACE) including cardiac death, aborted sudden death, heart transplantation, and rehospitalization for heart failure. The CVI42 imaging platform was used to assess morphological and functional MRI indices and to quantify LGE. The Body Diffusion Toolbox was used to derive pseudo diffusion (D*), water molecular diffusion (D) and perfusion fraction (f). STATISTICAL TESTS Univariable and stepwise multivariable Cox model analyses were used to investigate the association between variables and composite endpoints. Kaplan-Meier curves were constructed to assess event-free survival, and the event rates were compared by the log-rank test. RESULTS A total of 19 patients reached endpoints. Patients with MACE showed a significantly impaired D* value, lower f value, and more extensive LGE than those without MACE (all, P < 0.05), while there was no significant difference in D value (P = 0.285). In the Cox regression models, D* value (hazard ratio [HR] 0.93; 95% CI: 0.88-0.98) and f value (HR 0.65; 95% CI: 0.45-0.92) were independent predictors for MACE. Moreover, in Kaplan-Meier survival analysis, the incidence of MACE was significantly higher in patients with decreased D* value and f value. CONCLUSIONS Impaired D* and f values derived from IVIM-MRI are associated with adverse outcomes in patients with HCM. LEVEL OF EVIDENCE 2 TECHNICAL EFFICACY STAGE: 2.
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Affiliation(s)
- Xiaorui Xiang
- Department of Magnetic Resonance Imaging, Fuwai Hospital, National Center for Cardiovascular Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.,Clinical Medical College, Lanzhou University, Lanzhou, China
| | - Xiaoqiang Lin
- Clinical Medical College, Lanzhou University, Lanzhou, China
| | - Baoteng Zhang
- Clinical Medical College, Lanzhou University, Lanzhou, China
| | - Chen Lin
- Clinical Medical College, Lanzhou University, Lanzhou, China
| | - Junqiang Lei
- Clinical Medical College, Lanzhou University, Lanzhou, China.,Department of Radiology, First Hospital of Lanzhou University, Lanzhou, China
| | - Shunlin Guo
- Clinical Medical College, Lanzhou University, Lanzhou, China.,Department of Radiology, First Hospital of Lanzhou University, Lanzhou, China
| | - Shihua Zhao
- Department of Magnetic Resonance Imaging, Fuwai Hospital, National Center for Cardiovascular Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
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Zhou X, Wang X, Liu E, Zhang L, Zhang H, Zhang X, Zhu Y, Kuai Z. An Unsupervised Deep Learning Approach for
Dynamic‐Exponential
Intravoxel Incoherent Motion
MRI
Modeling and Parameter Estimation in the Liver. J Magn Reson Imaging 2022; 56:848-859. [PMID: 35064945 DOI: 10.1002/jmri.28074] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Revised: 01/09/2022] [Accepted: 01/10/2022] [Indexed: 12/18/2022] Open
Affiliation(s)
- Xin‐Xiang Zhou
- Imaging Center Harbin Medical University Cancer Hospital Harbin China
| | - Xin‐Yu Wang
- Imaging Center Harbin Medical University Cancer Hospital Harbin China
| | - En‐Hui Liu
- Imaging Center Harbin Medical University Cancer Hospital Harbin China
| | - Lan Zhang
- Imaging Center Harbin Medical University Cancer Hospital Harbin China
| | - Hong‐Xia Zhang
- Imaging Center Harbin Medical University Cancer Hospital Harbin China
| | - Xiu‐Shi Zhang
- Imaging Center Harbin Medical University Cancer Hospital Harbin China
| | - Yue‐Min Zhu
- CREATIS CNRS UMR 5220‐INSERM U1206‐University Lyon 1‐INSA Lyon‐University Jean Monnet Saint‐Etienne Lyon France
| | - Zi‐Xiang Kuai
- Imaging Center Harbin Medical University Cancer Hospital Harbin China
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Zhang XS, Liu EH, Wang XY, Zhou XX, Zhang HX, Zhu YM, Sang XQ, Kuai ZX. Short-Term Repeatability of in Vivo Cardiac Intravoxel Incoherent Motion Tensor Imaging in Healthy Human Volunteers. J Magn Reson Imaging 2021; 55:854-865. [PMID: 34296813 DOI: 10.1002/jmri.27847] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Revised: 07/10/2021] [Accepted: 07/12/2021] [Indexed: 01/05/2023] Open
Abstract
BACKGROUND Intravoxel incoherent motion (IVIM) tensor imaging is a promising technique for diagnosis and monitoring of cardiovascular diseases. Knowledge about measurement repeatability, however, remains limited. PURPOSE To evaluate short-term repeatability of IVIM tensor imaging in normal in vivo human hearts. STUDY TYPE Prospective. POPULATION Ten healthy subjects without history of heart diseases. FIELD STRENGTH/SEQUENCE Balanced steady-state free-precession cine sequence and single-shot spin-echo echo planar IVIM tensor imaging sequence (9 b-values, 0-400 seconds/mm2 and six diffusion-encoding directions) at 3.0 T. ASSESSMENT Subjects were scanned twice with an interval of 15 minutes, leaving the scanner between studies. The signal-to-noise ratio (SNR) was evaluated in anterior, lateral, septal, and inferior segments of the left ventricle wall. Fractional anisotropy (FA), mean diffusivity (MD), mean fraction (MF), and helix angle (HA) in the four segments were independently measured by five radiologists. STATISTICAL TESTS IVIM tensor indexes were compared between observers using a one-way analysis of variance or between scans using a paired t-test (normal data) or a Wilcoxon rank-sum test (non-normal data). Interobserver agreement and test-retest repeatability were assessed using the intraclass correlation coefficient (ICC), within-subject coefficient of variation (WCV), and Bland-Altman limits of agreements. RESULTS SNR of inferior segment was significantly lower than the other three segments, and inferior segment was therefore excluded from repeatability analysis. Interobserver repeatability was excellent for all IVIM tensor indexes (ICC: 0.886-0.972; WCV: 0.62%-4.22%). Test-retest repeatability was excellent for MD of the self-diffusion tensor (D) and MF of the perfusion fraction tensor (fp ) (ICC: 0.803-0.888; WCV: 1.42%-9.51%) and moderate for FA and MD of the pseudo-diffusion tensor (D* ) (ICC: 0.487-0.532; WCV: 6.98%-10.89%). FA of D and fp and HA of D presented good test-retest repeatability (ICC: 0.732-0.788; WCV: 3.28%-8.71%). DATA CONCLUSION The D and fp indexes exhibited satisfactory repeatability, but further efforts were needed to improve repeatability of D* indexes. LEVEL OF EVIDENCE 2 TECHNICAL EFFICACY: Stage 1.
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Affiliation(s)
- Xiu-Shi Zhang
- Imaging Center, Harbin Medical University Cancer Hospital, Harbin, China
| | - En-Hui Liu
- Imaging Center, Harbin Medical University Cancer Hospital, Harbin, China
| | - Xin-Yu Wang
- Imaging Center, Harbin Medical University Cancer Hospital, Harbin, China
| | - Xin-Xiang Zhou
- Imaging Center, Harbin Medical University Cancer Hospital, Harbin, China
| | - Hong-Xia Zhang
- Imaging Center, Harbin Medical University Cancer Hospital, Harbin, China
| | - Yue-Min Zhu
- CREATIS, CNRS UMR 5220-INSERM U1206-University Lyon 1-INSA Lyon-University Jean Monnet Saint-Etienne, Lyon, France
| | - Xi-Qiao Sang
- Division of Respiratory Disease, The Fourth Hospital of Harbin Medical University, Harbin, China
| | - Zi-Xiang Kuai
- Imaging Center, Harbin Medical University Cancer Hospital, Harbin, China
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