Ionic Liquid Solvation versus Catalysis: Computational Insight from a Multisubstituted Imidazole Synthesis in [Et2NH2][HSO4]

Computational exploration of the copper(I)-catalyzed conversion of hydrazones to dihalogenated vinyldiazene derivatives

This computational study explores the copper (I) chloride catalyzed synthesis of (E)-1-(2,2-dichloro-1-phenylvinyl)-2-phenyldiazene (2Cl-VD) from readily available hydrazone derivative and carbon tetrachloride (CCl4). 2Cl-VD has been extensively utilized to synthesize variety of heterocyclic organic compounds in mild conditions. The present computational investigations primarily focus on understanding the role of copper (I) and N1,N1,N2,N2-tetramethylethane-1,2-diamine (TMEDA) in this reaction, TMEDA often being considered a proton scavenger by experimentalists. Considering TMEDA as a ligand significantly alters the energy barrier. In fact, it is only 8.3 kcal/mol higher compared to the ligand-free (LF) route for the removal of a chlorine atom to form the radical ·CCl3 but the following steps are almost barrierless. This intermediate then participates in attacking the electrophilic carbon in the hydrazone. Crucially, the study reveals that the overall potential energy surface is thermodynamically favorable, and the theoretical turnover frequency (TOF) value is higher in the case of Cu(I)-TMEDA complex catalyzed pathway.

Computational predictions on Brønsted acidic ionic liquid-catalyzed carbon dioxide conversion to five-membered heterocyclic carbonyl derivatives

Experimentally conducted reactions between CO₂ and various substrates (i.e., ethylenediamine (EDA), ethanolamine (ETA), ethylene glycol (EG), mercaptoethanol (ME), and ethylene dithiol (EDT)) are considered in a computational study. The reactions were previously conducted under harsh conditions utilizing toxic metal catalysts. We computationally utilize Brønsted acidic ionic liquid (IL) [Et₂NH₂]HSO₄ as a catalyst aiming to investigate and propose 'greener' pathways for future experimental studies. Computations show that EDA is the best to fixate CO₂ among the tested substrates: the nucleophilic EDA attack on CO₂ is calculated to have a very small energy barrier to overcome (TS1EDA, ΔG^‡ = 1.4 kcal mol^-1) and form I1EDA (carbamic acid adduct). The formed intermediate is converted to cyclic urea (PEDA, imidazolidin-2-one) via ring closure and dehydration of the concerted transition state (TS2EDA, ΔG^‡ = 32.8 kcal mol^-1). Solvation model analysis demonstrates that nonpolar solvents (hexane, THF) are better for fixing CO₂ with EDA. Attaching electron-donating and -withdrawing groups to EDA does not reduce the energy barriers. Modifying the IL via changing the anion part (HSO₄^-) central S atom with 6 A and 5 A group elements (Se, P, and As) shows that a Se-based IL can be utilized for the same purpose. Molecular dynamics (MD) simulations reveal that the IL ion pairs can hold substrates and CO₂ molecules via noncovalent interactions to ease nucleophilic attack on CO₂.

Gram-Scale Synthesis of 1,8-Naphthyridines in Water: The Friedlander Reaction Revisited

The products of the Friedlander reaction, i.e., 1,8-naphthyridines, have far-reaching impacts in materials science, chemical biology, and medicine. The reported synthetic methodologies elegantly orchestrate the diverse synthetic routes of naphthyridines but require harsh reaction conditions, organic solvents, and expensive metal catalysts. Here, we introduce gram-scale synthesis of 1,8-naphthyridines in water using an inexpensive and biocompatible ionic liquid (IL) as a catalyst. This is the first-ever report on the synthesis of naphthyridines in water. This is a one-step reaction, and the product separation is relatively easy. The choline hydroxide (ChOH) is used as a metal-free, nontoxic, and water-soluble catalyst. In comparison to other catalysts reported in the literature, ChOH has the advantage of forming an additional hydrogen bond with the reactants, which is the vital step for the reaction to happen in water. Density functional theory (DFT) and noncovalent interaction (NCI) plot index analysis provide the plausible reaction mechanism for the catalytic cycle and confirm that hydrogen bonds with the IL catalyst are pivotal to facilitate the reaction. Molecular docking and molecular dynamics (MD) simulations are also performed to demonstrate the potentialities of the newly synthesized products as drugs. Through MD simulations, it was established that the tetrahydropyrido derivative of naphthyridine (10j) binds to the active sites of the ts3 human serotonin transporter (hSERT) (PDB ID: 6AWO) without perturbing the secondary structure, suggesting that 10j can be a potential preclinical drug candidate for hSERT inhibition and depression treatment.

Contemporary Progress in the Synthetic Strategies of Imidazole and its Biological Activities

Heterocyclic compounds are pervasive in many areas of life and one of the heterocycles, imidazole is a unique heterocyclic five-membered aromatic compound having two sp2 hybridized nitrogen atoms. Its integral name is 1, 3 diazole and previously, it was known as glyoxalin. This moiety has achieved a considerable place among scientists in recent years by reason of its divergent synthetic strategies and uncommon biological and pharmacological activities, for example, anti-convulsant, anti-microbial, anti-cancer, anti-inflammatory, anti-tumor, anti-viral, anti-ulcer, analgesic, etc. Due to distinct therapeutic actions, it is still an engrossed area of research. Researchers currently are inventing new greener methods to synthesize its derivatives and to improve its pharmacological activities. The purpose of this review is to study the literature that can help researchers to explore this area, its prevailing program for synthesis in environmentally friendly conditions and biological profile throughout past decades.

Computational investigation of catalytic effects of CX3COOH (X = F,Cl,H) on the three-component cyclocondensation reaction

The mechanism of acetic acid (AA), trifluoroacetic acid (TFA), and trichloroacetic acid (TCA) catalyzed three-component cyclocondensation reaction to (4S,6S)-4,6-diphenyl-1,3,5-triazinane-2-thione was determined via density functional calculations. Based on the potential energy surface diagram, TCA was found to be a reasonable catalyst [energy span (δG) is 2 kcal mol^-1 less than TFA and AA] for the reaction. An energetic span model implies that TFA and AA show the same catalytic performance. The impact of the presence of halogen atoms in TFA and TCA catalysts is quantified via energy barriers. Graphical Abstract Ranking catalytic efficiency of OTC triazinane-2-thione formation Graphical Abstract contains poor quality and small text inside the artwork. Please do not re-use the file that we have rejected or attempt to increase its resolution and re-save. It is originally poor, therefore, increasing the resolution will not solve the quality problem. We suggest that you provide us the original format. We prefer replacement figures containing vector/editable objects rather than embedded images. Preferred file formats are eps, ai, tiff and pdf.It is attached as tiff format.

Ionic Liquid Solvation versus Catalysis: Computational Insight from a Multisubstituted Imidazole Synthesis in [Et2NH2][HSO4]

The mechanisms of a tetrasubstituted imidazole [2‐(2,4,5‐triphenyl‐1 H‐imidazol‐1‐yl)ethan‐1‐ol] synthesis from benzil, benzaldehyde, ammonium acetate, and ethanolamine in [Et₂NH₂][HSO₄] ionic liquid (IL) are studied computationally. The effects of the presence of the cationic and anionic components of the IL on transition states and intermediate structures, acting as a solvent versus as a catalyst, are determined. In IL‐free medium, carbonyl hydroxylation when using a nucleophile (ammonia) proceeds with a Gibbs free energy (ΔG^≠) barrier of 49.4 kcal mol⁻¹. Cationic and anionic hydrogen‐bond solute–solvent interactions with the IL decrease the barrier to 35.8 kcal mol⁻¹. [Et₂NH₂][HSO₄] incorporation in the reaction changes the nature of the transition states and decreases the energy barriers dramatically, creating a catalytic effect. For example, carbonyl hydroxylation proceeds via two transition states, first proton donation to the carbonyl (ΔG^≠=9.2 kcal mol⁻¹) from [Et₂NH₂]⁺, and then deprotonation of ammonia (ΔG^≠=14.3) via Et₂NH. Likewise, incorporation of the anion component [HSO₄]⁻ of the IL gives comparable activation energies along the same reaction route and the lowest transition state for the product formation step. We propose a dual catalytic IL effect for the mechanism of imidazole formation. The computations demonstrate a clear distinction between IL solvent effects on the reaction and IL catalysis.