Sacred groves and serpent‐gods moderate human–snake relations

The State of Squamate Genomics: Past, Present, and Future of Genome Research in the Most Speciose Terrestrial Vertebrate Order

Squamates include more than 11,000 extant species of lizards, snakes, and amphisbaenians, and display a dazzling diversity of phenotypes across their over 200-million-year evolutionary history on Earth. Here, we introduce and define squamates (Order Squamata) and review the history and promise of genomic investigations into the patterns and processes governing squamate evolution, given recent technological advances in DNA sequencing, genome assembly, and evolutionary analysis. We survey the most recently available whole genome assemblies for squamates, including the taxonomic distribution of available squamate genomes, and assess their quality metrics and usefulness for research. We then focus on disagreements in squamate phylogenetic inference, how methods of high-throughput phylogenomics affect these inferences, and demonstrate the promise of whole genomes to settle or sustain persistent phylogenetic arguments for squamates. We review the role transposable elements play in vertebrate evolution, methods of transposable element annotation and analysis, and further demonstrate that through the understanding of the diversity, abundance, and activity of transposable elements in squamate genomes, squamates can be an ideal model for the evolution of genome size and structure in vertebrates. We discuss how squamate genomes can contribute to other areas of biological research such as venom systems, studies of phenotypic evolution, and sex determination. Because they represent more than 30% of the living species of amniote, squamates deserve a genome consortium on par with recent efforts for other amniotes (i.e., mammals and birds) that aim to sequence most of the extant families in a clade.

Conservation and cultural intersections within Hong Kong's snake soup industry

Snake soup continues to be an iconic tradition in Cantonese culture. Yet little is known about the relationship between snake soup consumption in Hong Kong, wild snake populations, and the communities depending on this tradition for their livelihoods. We applied an interdisciplinary approach including interviews with shopkeepers and genetic analyses of snake meat samples to determine the species consumed in Hong Kong, their source locations, and shopkeepers’ views on the future of the industry. We genetically identified the common rat snake Ptyas mucosa, widely distributed throughout East and Southeast Asia, and the Javan spitting cobra Naja sputatrix, endemic to Indonesia, as the species most commonly consumed, which was consistent with interview responses. According to interviews, snakes had mostly been imported from mainland China in the past, but now tend to be sourced from Southeast Asia, particularly Indonesia. Interviews also revealed a pessimistic outlook on the continuation of this tradition because of various factors, including a lasting yet misinformed association of snakes with the 2002–2003 outbreak of severe acute respiratory syndrome. Given the COVID-19 pandemic and China's ensuing ban on the consumption of terrestrial wildlife, Hong Kong's snake soup industry will probably continue to rely on Southeast Asian sources to persist. Given the cultural and conservation issues surrounding this tradition, further research on the economic, ecological and social consequences of snake consumption is needed to examine the broader implications of snake soup and similar industries in the region.

Sharing Spaces and Entanglements With Big Cats: The Warli and Their Waghoba in Maharashtra, India

Long histories of sharing space and resources have built complex, robust, and enduring relationships between humans and wildlife in many communities across the world. In order to understand what makes it possible for humans and wildlife to share space, we have to look beyond the ecological and socio-economic study of damages caused by human-wildlife conflict and explore the cultural and societal context within which co-existence is embedded. We conducted an exploratory study on the institution of Waghoba, a big cat deity worshiped by the Indigenous Warli community in Maharashtra, India. Through our research, we found that the worship of Waghoba is highly prevalent, with 150 shrines dedicated to this deity across our study site. We also learnt that the Warlis believe in a reciprocal relationship, where Waghoba will protect them from the negative impacts of sharing spaces with big cats if the people worship the deity and conduct the required rituals, especially the annual festival of Waghbaras. We propose that such relationships facilitate the sharing spaces between humans and leopards that live in the landscape. The study also revealed the ways in which the range of institutions and stakeholders in the landscape shape the institution of Waghoba and thereby contribute to the human-leopard relationship in the landscape. This is relevant for present-day wildlife conservation because such traditional institutions are likely to act as tolerance-building mechanisms embedded within the local cosmology. Further, it is vital that the dominant stakeholders outside of the Warli community (such as the Forest Department, conservation biologists, and other non-Warli residents who interact with leopards) are informed about and sensitive to these cultural representations because it is not just the biological animal that the Warlis predominantly deal with.

Prey–predator interaction suggests sacred groves are not functionally different from neighbouring used lands

Sacred groves (SG) of south India are either relics of primary or secondary forests or swamps, worshipped by the local communities, and distributed in the countrysides (CS) and forest landscapes of India. Studies suggest that SGs harbour a biodiversity different from that of adjoining CS and have a structural similarity to protected forests. Studies also suggest a negative effect of structural complexity of forests on predation. Considering these two expectations, we compared the predation of artificial caterpillars inside SGs and CSs with the hypothesis that predation will be less in SG than in CS. Examining the predation marks, we identified the likely predator and scored the intensity of predation. Bite marks of arthropods, birds, lizards and mammals were observed on caterpillars of both habitats. The predation rate and predation intensity were similar for overall predators and for each predator taxon in both habitats, despite the fact that mammal predation was mostly encountered in SGs. Because the proportion of predated caterpillars is not different between habitats and the intensity of predation is high in SGs, we conclude that SGs may not have a quality of the expected standard.