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Cao W, Hu Z, Peng X, Sun H, Sun Z, Wang XB. Annihilating Actinic Photochemistry of the Pyruvate Anion by One and Two Water Molecules. J Am Chem Soc 2022; 144:19317-19325. [PMID: 36166618 DOI: 10.1021/jacs.2c06319] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Photochemical behaviors of pyruvic acid in multiple phases have been extensively studied, while those of its conjugate base, the pyruvate anion (CH3COCOO-, PA-) are less understood and remain contradictory in gaseous versus aqueous phases. Here in this article, we report a joint experimental and theoretical study combining cryogenic, wavelength-resolved negative ion photoelectron spectroscopy (NIPES) and high-level quantum chemical computations to investigate PA- actinic photochemistry and its dependence on microsolvation in the gas phase. PA-·nH2O (n = 0-5) clusters were generated and characterized, with their low-lying isomers identified. NIPES conducted at multiple wavelengths across the PA- actinic regime revealed the PA- photochemistry extremely sensitive to its hydration extent. While bare PA- anions exhibit active photoinduced dissociations that generate the acetyl (CH3CO-), methide (CH3-) anions, their corresponding radicals, and slow electrons, one single attached water molecule results in significant suppression with a subsequent second water being able to completely block all dissociation pathways, effectively annihilating all PA- photochemical reactivities. The underlying dissociation mechanisms of PA-·nH2O (n = 0-2) clusters are proposed involving nπ* excitation, dehydration, decarboxylation, and further CO loss. Since the photoexcited dihydrate does not have sufficient energy to overcome the full dehydration barrier before PA- could fragmentate, the PA- dissociation pathway is completely blocked, with the energy most likely released via loss of one water and internal electronic and vibrational relaxations. The insight unraveled in this work provides a much-needed critical link to connect the seemingly conflicting PA- actinic chemistry between the gas and condensed phases.
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Affiliation(s)
- Wenjin Cao
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Zhubin Hu
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
| | - Xiaogai Peng
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
| | - Haitao Sun
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China.,NYU-ECNU Center for Computational Chemistry at NYU Shanghai, Shanghai 200062, China.,Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi 030006, China
| | - Zhenrong Sun
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China.,Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi 030006, China
| | - Xue-Bin Wang
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
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2
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Hammami F, Issaoui N. A DFT Study of the Hydrogen Bonded Structures of Pyruvic Acid–Water Complexes. FRONTIERS IN PHYSICS 2022. [DOI: 10.3389/fphy.2022.901736] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
The molecular geometries of the possible conformations of pyruvic acid–water complexes (PA-(H2O)n = 1–4) have been fully optimized at DFT/B3LYP/6-311G++ (d, p) levels of calculation. Among several optimized molecular clusters, we present here the most stable molecular arrangements obtained when one, two, three, and four water molecules are hydrogen-bonded to a central pyruvic acid molecule. Appropriate topological and geometrical parameters are considered primary indicators of H-bond strength. Atoms in molecules analysis shows that pyruvic acid can form a ring structure with water, and the molecular structures are stabilized by both strong O–H⋅⋅⋅O and C–H⋅⋅⋅O hydrogen bonds. In large clusters, classical O–H⋅⋅⋅O hydrogen bonds still exist between water molecules, and a cage-like structure is built around some parts of the central molecule of pyruvic acid.
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3
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Barquilla MDP, Mayes ML. Role of hydrogen bonding in bulk aqueous phase decomposition, complexation, and covalent hydration of pyruvic acid. Phys Chem Chem Phys 2022; 24:25151-25170. [DOI: 10.1039/d2cp03579k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
The behavior of hydrogen bonding changes between the gas and aqueous phase, altering the mechanisms of various pyruvic acid processes and consequently affecting the aerosol formation in different environments.
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Affiliation(s)
- Michael Dave P. Barquilla
- Department of Chemistry and Biochemistry, University of Massachusetts Dartmouth, North Dartmouth, MA 02747, USA
| | - Maricris L. Mayes
- Department of Chemistry and Biochemistry, University of Massachusetts Dartmouth, North Dartmouth, MA 02747, USA
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4
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Pollet R, Chin W. Reversible Hydration of α-Dicarbonyl Compounds from Ab Initio Metadynamics Simulations: Comparison between Pyruvic and Glyoxylic Acids in Aqueous Solutions. J Phys Chem B 2021; 125:2942-2951. [PMID: 33725456 DOI: 10.1021/acs.jpcb.0c09748] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Glyoxylic and pyruvic oxoacids are widely available in the atmosphere as gas-phase clusters and particles or in wet aerosols. In aqueous conditions, they undergo interconversion between the unhydrated oxo and gem-diol forms, where two hydroxyl groups replace the carbonyl group. We here examine the hydration equilibrium of glyoxylic and pyruvic acids with first-principles simulations in water at ambient conditions using ab initio metadynamics to reconstruct the corresponding free-energy landscapes. The main results are as follows: (i) our simulations reveal the high conformational diversity of these species in aqueous solutions. (ii) We show that gem-diol is strongly favored in water compared to its oxo counterpart by 29 and 16 kJ/mol for glyoxylic and pyruvic acids, respectively. (iii) From our atomic-scale simulations, we present new insights into the reaction mechanisms with a special focus on hydrogen-bond arrangements and the electronic structure of the transition state.
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Affiliation(s)
- Rodolphe Pollet
- NIMBE, Université Paris-Saclay, CEA, CNRS, 91191 Gif-sur-Yvette, France
| | - Wutharath Chin
- Institut des Sciences Moléculaires d'Orsay, Université Paris-Saclay, CNRS, 91405 Orsay, France
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5
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Blair SL, Reed Harris AE, Frandsen BN, Kjaergaard HG, Pangui E, Cazaunau M, Doussin JF, Vaida V. Conformer-Specific Photolysis of Pyruvic Acid and the Effect of Water. J Phys Chem A 2020; 124:1240-1252. [DOI: 10.1021/acs.jpca.9b10613] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Sandra L. Blair
- Department of Chemistry, University of Colorado Boulder, UCB 215, Boulder, Colorado 80309, United States
| | - Allison E. Reed Harris
- Department of Chemistry, University of Colorado Boulder, UCB 215, Boulder, Colorado 80309, United States
| | - Benjamin N. Frandsen
- Department of Chemistry, University of Colorado Boulder, UCB 215, Boulder, Colorado 80309, United States
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, 2100 Copenhagen Ø, Denmark
| | - Henrik G. Kjaergaard
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, 2100 Copenhagen Ø, Denmark
| | - Edouard Pangui
- Laboratoire Interuniversitaire des Systèmes Atmosphériques (LISA), UMR CNRS 7583, Institut Pierre Simon Laplace (IPSL), Université Paris-Est Créteil (UPEC) et Université de Paris (UP), 94010 Créteil, France
| | - Mathieu Cazaunau
- Laboratoire Interuniversitaire des Systèmes Atmosphériques (LISA), UMR CNRS 7583, Institut Pierre Simon Laplace (IPSL), Université Paris-Est Créteil (UPEC) et Université de Paris (UP), 94010 Créteil, France
| | - Jean-Francois Doussin
- Laboratoire Interuniversitaire des Systèmes Atmosphériques (LISA), UMR CNRS 7583, Institut Pierre Simon Laplace (IPSL), Université Paris-Est Créteil (UPEC) et Université de Paris (UP), 94010 Créteil, France
| | - Veronica Vaida
- Department of Chemistry, University of Colorado Boulder, UCB 215, Boulder, Colorado 80309, United States
- Cooperative Institute for Research in Environmental Sciences, University of Colorado Boulder, UCB 216, Boulder, Colorado 80309, United States
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6
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Shemesh D, Luo M, Grassian VH, Gerber RB. Absorption spectra of pyruvic acid in water: insights from calculations for small hydrates and comparison to experiment. Phys Chem Chem Phys 2020; 22:12658-12670. [DOI: 10.1039/d0cp01810d] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
This study shows that small hydrate models including the roles of both neutral and deprotonated speciated forms provide a good quantitative description and a microscopic interpretation of the experimental spectrum of pyruvic acid in aqueous solution.
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Affiliation(s)
- Dorit Shemesh
- Institute of Chemistry
- Fritz Haber Research Center
- Hebrew University of Jerusalem
- Jerusalem 91904
- Israel
| | - Man Luo
- Department of Chemistry
- University of California
- San Diego
- USA
| | | | - R. Benny Gerber
- Institute of Chemistry
- Fritz Haber Research Center
- Hebrew University of Jerusalem
- Jerusalem 91904
- Israel
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7
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Jana K, Ganguly B. DFT Study To Explore the Importance of Ring Size and Effect of Solvents on the Keto-Enol Tautomerization Process of α- and β-Cyclodiones. ACS OMEGA 2018; 3:8429-8439. [PMID: 31458971 PMCID: PMC6644555 DOI: 10.1021/acsomega.8b01008] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2018] [Accepted: 07/18/2018] [Indexed: 06/01/2023]
Abstract
We have explored the effect of ring size on keto-enol tautomerization of α- and β-cyclodiones using the M062X-SMDaq/6-31+G(d,p)//M062X/6-31+G(d,p) level of theory. The calculated results show that the activation free energy barrier for the keto-enol tautomerization process of α-cyclopropanedione (1) is 54.9 kcal/mol, which is lower compared to that of the other cyclic diketo systems studied here. The four-membered α- and β-cyclobutanedione (2 and 6) do not favor keto-enol tautomerization unlike other studied cyclic systems because of the ring strain developed in the transition-state geometries and their corresponding products. Water-assisted keto-enol tautomerization with one molecule reveals that the free energy activation barriers reduce almost half compared to those for the uncatalyzed systems. The two-water-assisted process is favorable as the activation free energy barriers lowered by ∼10 kcal/mol compared to those of the one-water-assisted process. The ion-pair formation seems to govern the lowering of activation barriers of α- and β-cyclodiones with two water molecules during the keto-enol tautomerization process, which however also overcomes the favorable aromatization in the three-membered ring system. The free energy activation barriers calculated with the M062X-SMDaq/6-31+G(d,p) level predicted that the keto-enol tautomerization process for the α-cyclodiones follows the following trend: 2 > 3 > 4 > 5 > 1. Water-assisted tautomerization of α-cyclodiones also predicted 1-W and 1-2W as the most favored processes; however, 5-W and 5-2W were found to be disfavored in this case. The β-cyclodione systems also showed similar trends as obtained with α-diketone systems. The influence of bulk solvent on the keto-enol tautomerization process favors the formation of the enol form in a more polar solvent medium even under mixed solvent conditions in acetonitrile and hexane at M062X-SMDacetonitrile/6-31+G(d,p) and M062X-SMDhexane/6-31+G(d,p) levels of theory.
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Affiliation(s)
- Kalyanashis Jana
- Computation
and Simulation Unit (Analytical Discipline and Centralized
Instrument Facility) and Academy of Scientific and Innovative Research, CSIR—Central Salt and Marine Chemicals Research
Institute, Bhavnagar 364002, India
| | - Bishwajit Ganguly
- Computation
and Simulation Unit (Analytical Discipline and Centralized
Instrument Facility) and Academy of Scientific and Innovative Research, CSIR—Central Salt and Marine Chemicals Research
Institute, Bhavnagar 364002, India
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8
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Jana K, Ganguly B. DFT studies on quantum mechanical tunneling in tautomerization of three-membered rings. Phys Chem Chem Phys 2018; 20:28049-28058. [DOI: 10.1039/c8cp03963a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Amino–imino and keto–enol tautomerization processes in three-membered ring systems have been explored to examine the role of quantum mechanical tunneling along with aromaticity. The DFT calculations shed light on the role of aromaticity in tautomerization processes and as perceived this property may not contribute entirely to facilitate the formation of tautomeric forms.
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Affiliation(s)
- Kalyanashis Jana
- Computation and Simulation Unit (Analytical Discipline and Centralized Instrument Facility)
- CSIR-Central Salt and Marine Chemicals Research Institute
- Bhavnagar-364002
- India
- Academy of Scientific and Innovative Research
| | - Bishwajit Ganguly
- Computation and Simulation Unit (Analytical Discipline and Centralized Instrument Facility)
- CSIR-Central Salt and Marine Chemicals Research Institute
- Bhavnagar-364002
- India
- Academy of Scientific and Innovative Research
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9
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Arora R, Issar U, Kakkar R. Theoretical study of the molecular structure and intramolecular proton transfer in benzohydroxamic acid. COMPUT THEOR CHEM 2017. [DOI: 10.1016/j.comptc.2017.02.014] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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10
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Udagawa T, Sugiura K, Suzuki K, Tachikawa M. Unusual H/D isotope effect in isomerization and keto–enol tautomerism reactions of pyruvic acid: nuclear quantum effect restricts some rotational isomerization reactions. RSC Adv 2017. [DOI: 10.1039/c6ra28271g] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
Abstract
H/D isotope effects on isomerization and keto–enol tautomerism reactions of the pyruvic acid molecule have been investigated using the multicomponent B3LYP methods, which can take account of the nuclear quantum effect of protons and deuterons.
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Affiliation(s)
- Taro Udagawa
- Department of Chemistry and Biomolecular Science
- Faculty of Engineering
- Gifu University
- Gifu 501-1193
- Japan
| | - Keita Sugiura
- Department of Chemistry and Biomolecular Science
- Faculty of Engineering
- Gifu University
- Gifu 501-1193
- Japan
| | - Kimichi Suzuki
- Quantum Chemistry Division
- Graduate School of Science
- Yokohama City University
- Yokohama
- Japan
| | - Masanori Tachikawa
- Quantum Chemistry Division
- Graduate School of Science
- Yokohama City University
- Yokohama
- Japan
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11
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12
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Larsen MC, Vaida V. Near Infrared Photochemistry of Pyruvic Acid in Aqueous Solution. J Phys Chem A 2012; 116:5840-6. [DOI: 10.1021/jp2087972] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Molly C. Larsen
- Department of Chemistry and Biochemistry, University of Colorado Boulder, Boulder,
Colorado 80309, United States
| | - Veronica Vaida
- Department of Chemistry and Biochemistry, University of Colorado Boulder, Boulder,
Colorado 80309, United States
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13
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Sanna D, Varnágy K, Timári S, Micera G, Garribba E. VO2+ Complexation by Bioligands Showing Keto–Enol Tautomerism: A Potentiometric, Spectroscopic, and Computational Study. Inorg Chem 2011; 50:10328-41. [DOI: 10.1021/ic201392d] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Daniele Sanna
- Istituto CNR di Chimica Biomolecolare, Trav. La Crucca 3, I-07040 Sassari, Italy
| | - Katalin Varnágy
- Department of Inorganic and Analytical Chemistry, University of Debrecen, H-4010 Debrecen, Hungary
| | - Sarolta Timári
- Department of Inorganic and Analytical Chemistry, University of Debrecen, H-4010 Debrecen, Hungary
| | - Giovanni Micera
- Dipartimento di Chimica e Centro Interdisciplinare per lo Sviluppo della Ricerca Biotecnologica e per lo Studio della Biodiversità della Sardegna, Università di Sassari, Via Vienna 2, I-07100 Sassari, Italy
| | - Eugenio Garribba
- Dipartimento di Chimica e Centro Interdisciplinare per lo Sviluppo della Ricerca Biotecnologica e per lo Studio della Biodiversità della Sardegna, Università di Sassari, Via Vienna 2, I-07100 Sassari, Italy
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14
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Raczyńska ED, Hallmann M, Duczmal K. Quantum-chemical studies of amide–iminol tautomerism for inhibitor of lactate dehydrogenase: Oxamic acid. COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2011.01.017] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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15
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Buemi G. DFT study of the hydrogen bond strength and IR spectra of formic, oxalic, glyoxylic and pyruvic acids in vacuum, acetone and water solution. J PHYS ORG CHEM 2009. [DOI: 10.1002/poc.1543] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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