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Şahin ME, Biryan F, Çalışkan E, Koran K. Coumarin-Phosphazenes: Enhanced Photophysical Properties from Hybrid Materials. Inorg Chem 2024; 63:11006-11020. [PMID: 38822816 DOI: 10.1021/acs.inorgchem.4c00379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/03/2024]
Abstract
Phosphazenes have drawn a great deal of interest over the past 20 years as a potentially useful building block for the fabrication of fluorescent materials. The main objective of this work is to explore novel derivatives produced by coumarins, a class of chemicals well-known for their photophysical importance, and cyclophosphazenes. UV absorbance, fluorescence emission, quantum yield, and lifetime measurements were conducted to comprehend the optical properties. Furthermore, single-crystal X-ray analysis and theoretical calculations were carried out to confirm the structure of the molecule. The obtained findings collectively confirm the commendable optical properties exhibited by the studied compounds. Moreover, a detailed study of the crystal packing arrangement of DPP-Et-Kum-Et compound crystallized in the P21/n monoclinic space group revealed the presence of stacking interactions between the nonplanar conjugated benzene rings of the coumarins and the rigid diphenyl groups attached to the phosphazene ring. The crystal structure of the DPP-Kum-Me-Me compound is mainly based on classical C-H···O intermolecular hydrogen bonding interactions with an average distance of 2.52 Å. Importantly, the calculated absorption spectra of the compounds are in close agreement with the experimental data, further supporting their interesting electronic properties. Given that the DPP-Et-Kum-Et and DPP-Kum-Et compounds have the theoretically lowest band gaps (4.31 and 4.30 eV, respectively), the activation energies of these compounds were determined by an impedance analyzer using dc conductance values measured at different temperatures. The calculated activation energies for DPP-Et-Kum-Et and DPP-Kum-Et are 104.49 and 100.92 meV, respectively. The results demonstrate that both theoretical and experimental calculations are in agreement with each other and that the DPP-Kum-Et compound has the lowest conductivity.
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Affiliation(s)
| | - Fatih Biryan
- Department of Chemistry, Fırat University, Elazig 23119, Turkey
| | - Eray Çalışkan
- Department of Chemistry, Bingol University, Bingol 12000, Turkey
| | - Kenan Koran
- Department of Chemistry, Fırat University, Elazig 23119, Turkey
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2
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Vallaro M, Ermondi G, Saame J, Leito I, Caron G. Ionization and lipophilicity in nonpolar media mimicking the cell membrane interior. Bioorg Med Chem 2023; 81:117203. [PMID: 36796127 DOI: 10.1016/j.bmc.2023.117203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 01/25/2023] [Accepted: 02/03/2023] [Indexed: 02/09/2023]
Abstract
Ionization and lipophilicity may vary with the environment. Therefore, in this study we provide some insight in the performances of different experimental techniques (potentiometry, UV-vis, shake-flask and chromatography) to determine ionization and lipophilicity in more nonpolar systems than those commonly used in drug discovery. To this purpose a pool of 11 compounds of pharmaceutical interest was firstly submitted to a few experimental techniques to measure pKa in water, water/acetonitrile mixtures and pure acetonitrile. Then we measured logP/logD with shake-flask and potentiometry in octanol/water and toluene/water and also determined a chromatographic lipophilicity index (log k'80 PLRP-S) in a nonpolar system. Results show that ionization decreases for both acids and bases in a coherent, significant but not dramatical extent when water is present in the system, but the picture is completely different in pure acetonitrile. Lipophilicity may vary or not with the environment according to the chemical structure of the investigated compounds as also revealed by electrostatic potential maps. Since the internal core of cell membranes is largely nonpolar, our results support the need of extending the pool of physicochemical descriptors to be determined in the various stages of drug discovery programs and indicate some experimental strategies for their determination.
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Affiliation(s)
- Maura Vallaro
- Molecular Biotechnology and Health Sciences Dept., Università degli Studi di Torino, via Quarello 15, 10135 Torino, Italy
| | - Giuseppe Ermondi
- Molecular Biotechnology and Health Sciences Dept., Università degli Studi di Torino, via Quarello 15, 10135 Torino, Italy
| | - Jaan Saame
- University of Tartu, Institute of Chemistry, Ravila 14a, Tartu 50411, Estonia
| | - Ivo Leito
- University of Tartu, Institute of Chemistry, Ravila 14a, Tartu 50411, Estonia
| | - Giulia Caron
- Molecular Biotechnology and Health Sciences Dept., Università degli Studi di Torino, via Quarello 15, 10135 Torino, Italy.
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3
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Binici A, Elmas G, Okumuş A, Güzel R, Şimşek H, Kılıç Z. Phosphorus–nitrogen compounds: Part 60: Synthesis of hexaminomonoferrocenyl-spiro(N/O)cyclotetraphosphazenes: Spectral and electrochemical properties, tuning of redox feature, and antituberculosis activity. PHOSPHORUS SULFUR 2022. [DOI: 10.1080/10426507.2022.2100888] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- Arzu Binici
- Department of Consumer Safety & Public Health Laboratories, Republic of Turkiye, Ministry of Health, Ankara, Türkiye
| | - Gamze Elmas
- Department of Chemistry, Ankara University, Ankara, Türkiye
| | - Aytuğ Okumuş
- Department of Chemistry, Ankara University, Ankara, Türkiye
| | - Remziye Güzel
- Department of Chemistry, Dicle University, Diyarbakır, Türkiye
| | - Hülya Şimşek
- Department of Medical Microbiology, Faculty of Medicine, Bozok University, Yozgat, Türkiye
| | - Zeynel Kılıç
- Department of Consumer Safety & Public Health Laboratories, Republic of Turkiye, Ministry of Health, Ankara, Türkiye
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4
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Mutlu G, Okumuş A, Elmas G, Kılıç Z, Guzel R, Sabah BN, Açık L, Mergen H, Hökelek T. Phosphorus-Nitrogen Compounds. Part 65. Novel diansa-spiro-cyclotetraphosphazenes: synthesis, characterization, bioactivity and electrochemical properties, fabrication of dye-sensitized solar cell studies. NEW J CHEM 2022. [DOI: 10.1039/d2nj03001b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this investigation, the substitution reaction of octachlorocyclotetraphosphazene, N4P4Cl8 (tetramer, OCCP, 1) with sodium 3-(N-ferrocenylmethylamino)-1-propanoxide (L1) was found to yield the compounds, 2,4-ansa- (2) and spiro- (2) cyclotetraphosphazene derivatives. The...
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Rammo M, Trummal A, Uudsemaa M, Pahapill J, Petritsenko K, Sildoja MM, Stark CW, Selberg S, Leito I, Palmi K, Adamson J, Rebane A. Novel lipophilic fluorophores with highly acidity-dependent two-photon response. Chemistry 2021; 28:e202103707. [PMID: 34964188 DOI: 10.1002/chem.202103707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Indexed: 11/07/2022]
Abstract
Lipophilic fluorophores are widely implemented in nonlinear microscopy; however, few existing membrane-specific probes combine high brightness of two-photon excited fluorescence (2PEF) with pH sensitivity. Here we describe four novel two-photon excited fluorophores, based on a coumarin 151 core structure, where lipophilicity is induced by a covalently attached phosphazene moiety. Changing the environmental acidity using trifluoromethanesulfonic (triflic) acid leads to profound changes in the linear fluorescence and 2PEF characteristics, due to chromophores' switching between neutral- and protonated forms. We characterize this dependence by measuring the two-photon absorption (2PA) spectra over the region λ 2PA = 550 - 1000 nm, observing 2PA cross sections of σ 2PA = 10 - 20 GM, with associated 2PEF brightness of 10 - 13 GM, in neutral solutions of both acetonitrile and n -octanol. Although quantum chemical modelling and NMR measurements show that, at high chromophore concentrations, protonation may be accompanied by a dimerization process, these dimers likely do not form at the lower concentrations used in optical spectroscopy.
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Affiliation(s)
- Matt Rammo
- Laboratory of Chemical Physics, National Institute of Chemical Physics and Biophysics, 23, Akadeemia tee, 12618, Tallinn, Estonia
| | - Aleksander Trummal
- Laboratory of Chemical Physics, National Institute of Chemical Physics and Biophysics, 23, Akadeemia tee, 12618, Tallinn, Estonia
| | - Merle Uudsemaa
- Laboratory of Chemical Physics, National Institute of Chemical Physics and Biophysics, 23, Akadeemia tee, 12618, Tallinn, Estonia
| | - Juri Pahapill
- Laboratory of Chemical Physics, National Institute of Chemical Physics and Biophysics, 23, Akadeemia tee, 12618, Tallinn, Estonia
| | - Katrin Petritsenko
- Laboratory of Chemical Physics, National Institute of Chemical Physics and Biophysics, 23, Akadeemia tee, 12618, Tallinn, Estonia
| | - Meelis-Mait Sildoja
- Laboratory of Chemical Physics, National Institute of Chemical Physics and Biophysics, 23, Akadeemia tee, 12618, Tallinn, Estonia
| | - Charles W Stark
- Laboratory of Chemical Physics, National Institute of Chemical Physics and Biophysics, 23, Akadeemia tee, 12618, Tallinn, Estonia
| | - Sigrid Selberg
- Institute of Chemistry, University of Tartu, 14a Ravila st, 50411, Tartu, Estonia
| | - Ivo Leito
- Institute of Chemistry, University of Tartu, 14a Ravila st, 50411, Tartu, Estonia
| | - Kirsti Palmi
- Laboratory of Chemical Physics, National Institute of Chemical Physics and Biophysics, 23, Akadeemia tee, 12618, Tallinn, Estonia
| | - Jasper Adamson
- Laboratory of Chemical Physics, National Institute of Chemical Physics and Biophysics, 23, Akadeemia tee, 12618, Tallinn, Estonia
| | - Aleksander Rebane
- Laboratory of Chemical Physics, National Institute of Chemical Physics and Biophysics, 23, Akadeemia tee, 12618, Tallinn, Estonia
- Department of Physics, Montana State University, Bozeman, MT, 59717, USA
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6
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Bozkurt B, Elmas G, Yakut M, Okumuş A, Çerçi NA, Zeyrek CT, Kılıç Z, Açık L, Hökelek T. Phosphorus‐nitrogen compounds part 59. The syntheses of tetrachloro and tetraamino‐2‐pyridylmethylspiro(N/N)ethylenediaminocyclotriphosphazenes: Structural characterization, bioactivity, and molecular docking studies. J CHIN CHEM SOC-TAIP 2021. [DOI: 10.1002/jccs.202100475] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Bilge Bozkurt
- Department of Chemistry Ankara University Ankara Turkey
| | - Gamze Elmas
- Department of Chemistry Ankara University Ankara Turkey
| | - Mehtap Yakut
- Department of Chemistry Ankara University Ankara Turkey
| | - Aytuğ Okumuş
- Department of Chemistry Ankara University Ankara Turkey
| | | | - Celal Tuğrul Zeyrek
- Department of Academy and Publications Turkish Energy, Nuclear and Mineral Research Agency Ankara Turkey
| | - Zeynel Kılıç
- Department of Chemistry Ankara University Ankara Turkey
| | - Leyla Açık
- Department of Biology Gazi University Ankara Turkey
| | - Tuncer Hökelek
- Department of Physics Hacettepe University Ankara Turkey
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7
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Binici A, Okumuş A, Yakut M, Elmas G, Kılıç Z, Koyunoğlu D, Açık L, Şimşek H. Phosphorus-nitrogen compounds. Part 56. Comparative syntheses and spectral properties of multiheterocyclic 2- cis-4-ansa and spiro-ferrocenyl (N/O)cyclotetraphosphazenes: Antituberculosis and antimicrobial activity and DNA interaction studies. PHOSPHORUS SULFUR 2021. [DOI: 10.1080/10426507.2021.1986502] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Arzu Binici
- Republic of Turkey Ministry of Health, Ankara, Turkey
| | - Aytuğ Okumuş
- Department of Chemistry, Ankara University, Ankara, Turkey
| | - Mehtap Yakut
- Department of Chemistry, Ankara University, Ankara, Turkey
| | - Gamze Elmas
- Department of Chemistry, Ankara University, Ankara, Turkey
| | - Zeynel Kılıç
- Department of Chemistry, Ankara University, Ankara, Turkey
| | | | - Leyla Açık
- Department of Biology, Gazi University, Ankara, Turkey
| | - Hülya Şimşek
- Department of Microbiology, Bozok University, Yozgat, Turkey
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Umeno T, Usui K, Karasawa S. π‐Extended Push‐Pull‐Type Bicyclic Fluorophores Based on Quinoline and Naphthyridine Frameworks with an Iminophosphorane Fragment. ASIAN J ORG CHEM 2021. [DOI: 10.1002/ajoc.202100015] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Tomohiro Umeno
- Faculty of Pharmaceutical Sciences Showa Pharmaceutical University 3-3165 Higashi-tamagawagakuen Machida 194-8543 Japan
| | - Kazuteru Usui
- Faculty of Pharmaceutical Sciences Showa Pharmaceutical University 3-3165 Higashi-tamagawagakuen Machida 194-8543 Japan
| | - Satoru Karasawa
- Faculty of Pharmaceutical Sciences Showa Pharmaceutical University 3-3165 Higashi-tamagawagakuen Machida 194-8543 Japan
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Tshepelevitsh S, Kadam SA, Darnell A, Bobacka J, Rüütel A, Haljasorg T, Leito I. LogP determination for highly lipophilic hydrogen-bonding anion receptor molecules. Anal Chim Acta 2020; 1132:123-133. [PMID: 32980103 DOI: 10.1016/j.aca.2020.07.024] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Revised: 07/10/2020] [Accepted: 07/13/2020] [Indexed: 01/31/2023]
Abstract
Lipophilicity, usually expressed as octanol-water partition coefficient (logPo/w), is an important property in biomedical research, drug design and technology. However, high logPo/w values of complex hydrogen-bonding molecules are not easy to measure or calculate. Exemplary problematic molecules are prospective active components (ionophores) of polymeric sensor membranes - the working elements of ion-selective electrodes. High lipophilicities of the membrane components are crucial for the sensor lifetime. In this work, lipophilicities of a wide range of urea-, carbazole- and indolocarbazole-based anion receptor molecules (some newly synthesized) and two common plasticizers were determined using a chromatography-based approach and/or the COSMO-RS method. Very high logPo/w values, up to around 20, i.e. far beyond directly experimentally accessible range, were obtained. The agreement between the two approaches ranged from very good to satisfactory. Based on these results, simple fragment-based equations were developed for quick lipophilicity estimation without any specialized software. Membrane-water partition coefficients for the studied compounds were modeled. Limitations and biases of the used methods are discussed.
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Affiliation(s)
- Sofja Tshepelevitsh
- Institute of Chemistry, University of Tartu, Ravila 14a, 50411, Tartu, Estonia
| | - Sandip A Kadam
- Institute of Chemistry, University of Tartu, Ravila 14a, 50411, Tartu, Estonia
| | - Astrid Darnell
- Institute of Chemistry, University of Tartu, Ravila 14a, 50411, Tartu, Estonia
| | - Johan Bobacka
- Åbo Akademi University, Johan Gadolin Process Chemistry Centre, Laboratory of Molecular Science and Engineering, Biskopsgatan 8, FI-20500, Turku/Åbo, Finland
| | - Alo Rüütel
- Institute of Chemistry, University of Tartu, Ravila 14a, 50411, Tartu, Estonia
| | - Tõiv Haljasorg
- Institute of Chemistry, University of Tartu, Ravila 14a, 50411, Tartu, Estonia
| | - Ivo Leito
- Institute of Chemistry, University of Tartu, Ravila 14a, 50411, Tartu, Estonia.
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10
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Hsia LY, Chen HN, Chiang CH, Hung MY, Wei HK, Luo CW, Kuo MY, Luo SY, Chu CC. π-Extended Coumarins Derived with Nonhydrolyzable Iminophosphoranes as Two-Photon-Excited Fluorophores. J Org Chem 2020; 85:9361-9366. [PMID: 32512991 DOI: 10.1021/acs.joc.0c00901] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Novel coumarin-iminophosphorane (IPP) fluorophores that have stable resonance contributions from aza-ylides were formed by using the nonhydrolysis Staudinger reaction. The N═P formation reaction kinetics obey the conventional Staudinger reaction. The absorption and emission profiles of the coumarin-IPP derivatives can be fine-tuned: an electron-donating group at PPh3 enhances absorption and fluorescence, whereas an electron-withdrawing group at C-3 drives absorption and emission peaks toward blue-light wavelengths. Two-photon adsorption, accompanied by anti-Stokes fluorescence, is achieved under near-infrared femtosecond laser excitation.
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Affiliation(s)
- Liang-Yu Hsia
- Department of Chemistry, National Chung Hsing University, Taichung 403, Taiwan
| | - Hsin-Ni Chen
- Department of Medical Applied Chemistry, Chung Shan Medical University, Taichung 402, Taiwan
| | - Chun-Hao Chiang
- Department of Chemistry, National Chung Hsing University, Taichung 403, Taiwan
| | - Ming-Yang Hung
- Department of Medical Applied Chemistry, Chung Shan Medical University, Taichung 402, Taiwan
| | - Hao-Keng Wei
- Department of Electrophysics, National Chiao Tung University, Hsinchu 300, Taiwan
| | - Chih-Wei Luo
- Department of Electrophysics, National Chiao Tung University, Hsinchu 300, Taiwan
| | - Ming-Yu Kuo
- Department of Applied Chemistry, National Chi Nan University, Puli 545, Taiwan
| | - Shun-Yuan Luo
- Department of Chemistry, National Chung Hsing University, Taichung 403, Taiwan
| | - Chih-Chien Chu
- Department of Medical Applied Chemistry, Chung Shan Medical University, Taichung 402, Taiwan.,Department of Medical Education, Chung Shan Medical University Hospital, Taichung 402, Taiwan
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Tshepelevitsh S, Kütt A, Lõkov M, Kaljurand I, Saame J, Heering A, Plieger PG, Vianello R, Leito I. On the Basicity of Organic Bases in Different Media. European J Org Chem 2019. [DOI: 10.1002/ejoc.201900956] [Citation(s) in RCA: 154] [Impact Index Per Article: 30.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
| | - Agnes Kütt
- Institute of Chemistry; University of Tartu; Ravila 14a 50411 Tartu Estonia
| | - Märt Lõkov
- Institute of Chemistry; University of Tartu; Ravila 14a 50411 Tartu Estonia
| | - Ivari Kaljurand
- Institute of Chemistry; University of Tartu; Ravila 14a 50411 Tartu Estonia
| | - Jaan Saame
- Institute of Chemistry; University of Tartu; Ravila 14a 50411 Tartu Estonia
| | - Agnes Heering
- Institute of Chemistry; University of Tartu; Ravila 14a 50411 Tartu Estonia
| | - Paul G. Plieger
- School of Fundamental Sciences; Massey University; Private Bag 11 222 Palmerston North New Zealand
| | - Robert Vianello
- Computational Organic Chemistry and Biochemistry Group; Ruđer Bošković Institute; Bijenička cesta 54 10000 Zagreb Croatia
| | - Ivo Leito
- Institute of Chemistry; University of Tartu; Ravila 14a 50411 Tartu Estonia
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