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For: Hayward S, Leader DP, Al-Shubailly F, Milner-White EJ. Rings and ribbons in protein structures: Characterization using helical parameters and Ramachandran plots for repeating dipeptides. Proteins 2013;82:230-9. [DOI: 10.1002/prot.24357] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2013] [Revised: 06/10/2013] [Accepted: 06/10/2013] [Indexed: 12/30/2022]
Number Cited by Other Article(s)
1
Sahu S, Banerjee R, Pal D. Intrinsic proclivity of left-handed conformation in large Nest motif peptides inferred from molecular dynamics. J Biomol Struct Dyn 2024;42:6882-6891. [PMID: 37464873 DOI: 10.1080/07391102.2023.2236710] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Accepted: 07/10/2023] [Indexed: 07/20/2023]
2
Leader DP, Milner-White EJ. The conserved crown bridge loop at the catalytic centre of enzymes of the haloacid dehalogenase superfamily. Curr Res Struct Biol 2023;6:100105. [PMID: 37786806 PMCID: PMC10541634 DOI: 10.1016/j.crstbi.2023.100105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Revised: 08/31/2023] [Accepted: 09/10/2023] [Indexed: 10/04/2023]  Open
3
The role of the half-turn in determining structures of Alzheimer's Aβ wild-type and mutants. J Struct Biol 2021;213:107792. [PMID: 34481077 DOI: 10.1016/j.jsb.2021.107792] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Revised: 08/10/2021] [Accepted: 08/29/2021] [Indexed: 01/01/2023]
4
Hayward S, Milner-White EJ. Determination of amino acids that favour the αL region using Ramachandran propensity plots. Implications for α-sheet as the possible amyloid intermediate. J Struct Biol 2021;213:107738. [PMID: 33838226 DOI: 10.1016/j.jsb.2021.107738] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2021] [Revised: 04/01/2021] [Accepted: 04/04/2021] [Indexed: 11/28/2022]
5
Drouillat B, Peggion C, Biondi B, Wright K, Couty F, Crisma M, Formaggio F, Toniolo C. Heterochiral Ala/( αMe)Aze sequential oligopeptides: S ynthesis and conformational study. J Pept Sci 2019;25:e3165. [DOI: 10.1002/psc.3165] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2018] [Revised: 02/18/2019] [Accepted: 02/19/2019] [Indexed: 12/31/2022]
6
Russell MJ. Green Rust: The Simple Organizing 'Seed' of All Life? Life (Basel) 2018;8:E35. [PMID: 30150570 PMCID: PMC6161180 DOI: 10.3390/life8030035] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2018] [Revised: 06/28/2018] [Accepted: 08/14/2018] [Indexed: 01/18/2023]  Open
7
Conformations of peptoids in nanosheets result from the interplay of backbone energetics and intermolecular interactions. Proc Natl Acad Sci U S A 2018;115:5647-5651. [PMID: 29760077 DOI: 10.1073/pnas.1800397115] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
8
Chitranshi N, Dheer Y, Wall RV, Gupta V, Abbasi M, Graham SL, Gupta V. Computational analysis unravels novel destructive single nucleotide polymorphisms in the non-synonymous region of human caveolin gene. GENE REPORTS 2017. [DOI: 10.1016/j.genrep.2016.08.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
9
Shankar S, Wani NA, Singh UP, Rai R. Incipient Twisted Ribbon Structure Stabilized by C12Helical Turns in γ4/α Hybrid Peptide. ChemistrySelect 2016. [DOI: 10.1002/slct.201600793] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
10
Mannige RV, Kundu J, Whitelam S. The Ramachandran Number: An Order Parameter for Protein Geometry. PLoS One 2016;11:e0160023. [PMID: 27490241 PMCID: PMC4973960 DOI: 10.1371/journal.pone.0160023] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2016] [Accepted: 07/12/2016] [Indexed: 11/18/2022]  Open
11
Leader DP, Milner-White EJ. Bridging of partially negative atoms by hydrogen bonds from main-chain NH groups in proteins: The crown motif. Proteins 2015;83:2067-76. [DOI: 10.1002/prot.24923] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2015] [Revised: 08/29/2015] [Accepted: 09/01/2015] [Indexed: 11/05/2022]
12
Martin V, Legrand B, Vezenkov LL, Berthet M, Subra G, Calmès M, Bantignies JL, Martinez J, Amblard M. Turning Peptide Sequences into Ribbon Foldamers by a Straightforward Multicyclization Reaction. Angew Chem Int Ed Engl 2015;54:13966-70. [DOI: 10.1002/anie.201506955] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2015] [Revised: 08/26/2015] [Indexed: 12/19/2022]
13
Martin V, Legrand B, Vezenkov LL, Berthet M, Subra G, Calmès M, Bantignies J, Martinez J, Amblard M. Turning Peptide Sequences into Ribbon Foldamers by a Straightforward Multicyclization Reaction. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201506955] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
14
Afzal AM, Al-Shubailly F, Leader DP, Milner-White EJ. Bridging of anions by hydrogen bonds in nest motifs and its significance for Schellman loops and other larger motifs within proteins. Proteins 2014;82:3023-31. [DOI: 10.1002/prot.24663] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2014] [Revised: 07/30/2014] [Accepted: 08/05/2014] [Indexed: 01/13/2023]
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