Carbon-isotopic composition of soil-respired carbon dioxide in static closed chambers at equilibrium

Vertical and seasonal variation in the δ¹³C of leaf-respired CO₂ in a mixed conifer forest

The C-isotopic composition (δ¹³C) of leaf respiration (δ(LR)) has previously been shown to vary among functional groups, plant organs and times of day. We here investigated vertical and seasonal variation in δ(LR) through deep (~35 m) forest canopies. We measured δ(LR), δ¹³C of leaf bulk organic matter (δ(LB)), specific leaf area, net photosynthesis (A) and dark respiration in shade, middle and sun foliage in four conifer species from May to August. We used Keeling plots to estimate δ(LR); we developed a novel technique for ensuring that the respiratory substrate was not changing over the course of the measurement. Variables δ(LR) and δ(LB) displayed a vertical pattern in Abies grandis, Pseudotsuga menziesii and Thuja plicata, but were independent of canopy position in Larix occidentalis. Vertical gradients in δ(LB) (3.6‰) and δ(LR) (2.8‰) were similar. The respiratory enrichment (δ(LR)-δ(LB)) was smaller in expanding (3‰) than mature (4-8‰) foliage. There was a linear relationship between the respiratory enrichment and A. Our data support the hypothesis that δ(LR) values are related to patterns of C allocation among metabolic pathways. We demonstrated that considerable variation in δ(LR) occurs vertically through the canopy (3‰ gradient) and seasonally (3-7‰). Understanding sources of variation in respiratory signals is fundamental to comprehending C dynamics and for global model applications.

Challenges in measuring the δ13C of the soil surface CO2 efflux

The δ13C of the soil surface efflux of carbon dioxide (δ13CRS) has emerged as a powerful tool enabling investigation of a wide range of soil processes from characterising entire ecosystem respiration to detailed compound-specific isotope studies. δ13CRS can be used to trace assimilated carbon transfer below ground and to partition the overall surface efflux into heterotrophic and autotrophic components. Despite this wide range of applications no consensus currently exists on the most appropriate method of sampling this surface efflux of CO2 in order to measure δ13CRS. Here we consider and compare the methods which have been used, and examine the pitfalls. We also consider a number of analysis options, isotope ratio mass spectrometry (IRMS), tuneable diode laser spectroscopy (TDLS) and cavity ring-down laser spectroscopy (CRDS). δ13CRS is typically measured using chamber systems, which fall into three types: closed, open and dynamic. All are imperfect. Closed chambers often rely on Keeling plots to estimate δ13CRS, which may not be appropriate without free turbulent air mixing. Open chambers have the advantage of being able to maintain steady-state conditions but analytical errors may become limiting with low efflux rates. Dynamic chambers like open chambers are complex, and controlling pressure fluctuations caused by air movement is a key concern. Both open and dynamic chambers in conjunction with field portable TDLS and CRDS analysis systems have opened up the possibility of measuring δ13CRS in real time permitting new research opportunities and are on balance the most suited to this type of measurement.

Storage and transpiration have negligible effects on delta13C of stem CO2 efflux in large conifer trees

Stem respiration rates are often quantified by measuring the CO(2) efflux from stems into chambers. It has been suggested that these measurements underestimate respiration because some of the respired CO(2) can be either retained or transported upwards in the transpiration stream. If the stem CO(2) efflux does not represent all respired CO(2), then the interpretation of its isotopic signal may be compromised as well. The C-isotope composition of the respired CO(2) and the measured efflux could differ due to (i) the release of CO(2) produced elsewhere into the stem and transported upwards in xylem water (soil CO(2) or root respired CO(2)); (ii) the retention or release of CO(2) storage pools within the tree stem and (iii) the removal of CO(2) by the transpiration stream. We investigated the effects of these processes in large conifer trees using two manipulative experiments: a labelling experiment and a crown removal experiment. The labelling experiment used an extreme enrichment of dissolved CO(2) in soil water to assess the C uptake by the roots. In this experiment, we found no contamination of the stem CO(2) pool despite clear evidence that the water itself had been taken up. The crown removal experiment tested for vertical CO(2) flux in xylem water by eliminating transpiration. Here, we found no change in the delta(13)C of stem CO(2) efflux (delta(EA); P > 0.05). We concluded that for these large conifers, sap-flow influenced neither delta(13)C of stem efflux nor that of the stem CO(2) pool. By parameterizing Henry's Law for conditions inside the stem, we estimated the transport flux to represent 1-3% of the stem CO(2) efflux to the atmosphere. Finally, assuming a 2 per thousand difference between delta(13)C of root and stem respiration, we estimated that potential contamination of delta(EA) by root respired CO(2) would be < 0.1 per thousand. Thus, neither the release of soil or root CO(2), nor storage in the stem, nor vertical transport of CO(2) in the xylem sap had any detectable influence on delta(13)C of the CO(2) measured in stem efflux.

Analysis of low-concentration gas samples with continuous-flow isotope ratio mass spectrometry: eliminating sources of contamination to achieve high precision

Developments in continuous-flow isotope ratio mass spectrometry have made possible the rapid analysis of delta13C in CO2 of small-volume gas samples with precisions of < or = 0.1 per thousand. Prior research has validated the integrity of septum-capped vials for collection and short-term storage of gas samples. However, there has been little investigation into the sources of contamination during the preparation and analysis of low-concentration gas samples. In this study we determined (1) sources of contamination on a Gasbench II, (2) developed an analytical procedure to reduce contamination, and (3) identified an efficient, precise method for introducing sample gas into vials. We investigated three vial-filling procedures: (1) automated flush-fill (AFF), (2) vacuum back-fill (VBF), and (3) hand-fill (HF). Treatments were evaluated based on the time required for preparation, observed contamination, and multi-vial precision. The worst-case observed contamination was 4.5% of sample volume. Our empirical estimate showed that this level of contamination results in an error of 1.7 per thousand for samples with near-ambient CO2 concentrations and isotopic values that followed a high-concentration carbonate reference with an isotope ratio of -47 per thousand (IAEA-CO-9). This carry-over contamination on the Gasbench can be reduced by placing a helium-filled vial between the standard and the succeeding sample or by ignoring the first two of five sample peaks generated by each analysis. High-precision (SD < or = 0.1 per thousand) results with no detectable room-air contamination were observed for AFF and VBF treatments. In contrast, the precision of HF treatments was lower (SD > or = 0.2 per thousand). VBF was optimal for the preparation of gas samples, as it yielded faster throughput at similar precision to AFF.

A numerical evaluation of chamber methodologies used in measuring the delta(13)C of soil respiration

Measurement of the delta(13)C value of soil-respired CO(2) (delta(r)) has become a commonplace method through which ecosystem function and C dynamics can be better understood. Despite its proven utility there is currently no consensus on the most robust method with which to measure delta(r). Static and dynamic chamber systems are both commonly used for this purpose; however, the literature on these methods provides evidence suggesting that measurements of delta(r) made with these chamber systems are neither repeatable (self-consistent) nor comparable across methodologies. Here we use a three-dimensional (3-D) numerical soil-atmosphere-chamber model to test these chamber systems in a 'surrogate reality'. Our simulations show that each chamber methodology is inherently biased and that no chamber methodology can accurately predict the true delta(r) signature under field conditions. If researchers intend to use delta(r) to study in situ ecosystem processes, the issues with these chamber systems need to be corrected either by using diffusive theory or by designing a new, unbiased delta(r) measurement system.

A laboratory comparison of two methods used to estimate the isotopic composition of soil delta13CO2 efflux at steady state

The stable isotopic composition of soil (13)CO(2) flux is important for monitoring soil biological and physical processes. While several methods exist to measure the isotopic composition of soil flux, we do not know how effective each method is at achieving this goal. To provide clear evidence of the accuracy of current measurement techniques we created a column filled with quartz sand through which a gas of known isotopic composition (-34.2 per thousand) and concentration (3,000 ppm) diffused for 7 h. We used a static chamber at equilibrium and a soil probe technique to test whether they could identify the isotopic signature of the known gas source. The static chamber is designed to identify the source gas isotopic composition when in equilibrium with the soil gas, and the soil probe method relies on a mixing model of samples withdrawn from three gas wells at different depths to identify the gas source. We sampled from ports installed along the side of the sand column to describe the isotopic and concentration gradient as well as to serve as a control for the soil probe. The soil probe produced similar isotopic and concentration values as the control ports, as well as Keeling intercepts. The static chamber at equilibrium did not identify the source gas but, when applied in a two end-member mixing model, did produce a similar Keeling intercept produced from the control ports. Neither of the methods was able to identify the source gas via the Keeling plot method probably because CO(2) profiles did not reach isotopic steady state. Our results showed that the static chamber at equilibrium should be used only with a Keeling plot approach and that the soil probe is able to provide estimates of uncertainty for the isotopic composition of soil gas as well as information pertinent to the soil profile.

Measuring the 13C content of soil-respired CO2 using a novel open chamber system

Carbon dioxide respired by soils comes from both autotrophic and heterotrophic respiration. 13C has proved useful in differentiating between these two sources, but requires the collection and analysis of CO2 efflux from the soil. We have developed a novel, open chamber system which allows for the accurate and precise quantification of the delta13C of soil-respired CO2. The chamber was tested using online analyses, by configuring a GasBench II and continuous flow isotope ratio mass spectrometer, to measure the delta13C of the chamber air every 120 s. CO2 of known delta13C value was passed through a column of sand and, using the chamber, the CO2 concentration stabilized rapidly, but 60 min was required before the delta13C value was stable and identical to the cylinder gas (-33.3 per thousand). Changing the chamber CO2 concentration between 200 and 900 micromol.mol(-1) did not affect the measured delta13C of the efflux. Measuring the delta13C of the CO2 efflux from soil cores in the laboratory gave a spread of +/-2 per thousand, attributed to heterogeneity in the soil organic matter and roots. Lateral air movement through dry sand led to a change in the delta13C of the surface efflux of up to 8 per thousand. The chamber was used to measure small transient changes (+/-2 per thousand) in the delta13C of soil-respired CO2 from a peaty podzol after gradual heating from 12 to 35 degrees C over 12 h. Finally, soil-respired CO2 was partitioned in a labelling study and the contribution of autotrophic and heterotrophic respiration to the total efflux determined. Potential applications for the chamber in the study of soil respiration are discussed.