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For: Abaye DA, Pullen FS, Nielsen BV. Peptide polarity and the position of arginine as sources of selectivity during positive electrospray ionisation mass spectrometry. Rapid Commun Mass Spectrom 2011;25:3597-3608. [PMID: 22095509 DOI: 10.1002/rcm.5270] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Number Cited by Other Article(s)
1
Abdul-Khalek N, Wimmer R, Overgaard MT, Gregersen Echers S. Insight on physicochemical properties governing peptide MS1 response in HPLC-ESI-MS/MS: A deep learning approach. Comput Struct Biotechnol J 2023;21:3715-3727. [PMID: 37560124 PMCID: PMC10407266 DOI: 10.1016/j.csbj.2023.07.027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Revised: 07/13/2023] [Accepted: 07/19/2023] [Indexed: 08/11/2023]  Open
2
Mallikarjun V, Richardson SM, Swift J. BayesENproteomics: Bayesian Elastic Nets for Quantification of Peptidoforms in Complex Samples. J Proteome Res 2020;19:2167-2184. [PMID: 32319298 DOI: 10.1021/acs.jproteome.9b00468] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
3
Ammar C, Gruber M, Csaba G, Zimmer R. MS-EmpiRe Utilizes Peptide-level Noise Distributions for Ultra-sensitive Detection of Differentially Expressed Proteins. Mol Cell Proteomics 2019;18:1880-1892. [PMID: 31235637 PMCID: PMC6731086 DOI: 10.1074/mcp.ra119.001509] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2019] [Revised: 06/12/2019] [Indexed: 11/06/2022]  Open
4
Harlow K, Taylor E, Casey T, Hedrick V, Sobreira T, Aryal UK, Lemenager RP, Funnell B, Stewart K. Diet Impacts Pre-implantation Histotroph Proteomes in Beef Cattle. J Proteome Res 2018;17:2144-2155. [PMID: 29722258 DOI: 10.1021/acs.jproteome.8b00077] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
5
Rosen O, Feldberg L, Dor E, Gura S, Zichel R. Optimization of SNAP-25-derived peptide substrate for improved detection of botulinum A in the Endopep-MS assay. Anal Biochem 2017;528:34-37. [PMID: 28450105 DOI: 10.1016/j.ab.2017.04.012] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2016] [Revised: 04/20/2017] [Accepted: 04/21/2017] [Indexed: 12/24/2022]
6
Nišavić M, Hozić A, Hameršak Z, Radić M, Butorac A, Duvnjak M, Cindrić M. High-Efficiency Microflow and Nanoflow Negative Electrospray Ionization of Peptides Induced by Gas-Phase Proton Transfer Reactions. Anal Chem 2017;89:4847-4854. [DOI: 10.1021/acs.analchem.6b04466] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
7
Goeminne LJE, Gevaert K, Clement L. Experimental design and data-analysis in label-free quantitative LC/MS proteomics: A tutorial with MSqRob. J Proteomics 2017;171:23-36. [PMID: 28391044 DOI: 10.1016/j.jprot.2017.04.004] [Citation(s) in RCA: 51] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2017] [Revised: 03/29/2017] [Accepted: 04/01/2017] [Indexed: 12/14/2022]
8
Jarnuczak AF, Lee DCH, Lawless C, Holman SW, Eyers CE, Hubbard SJ. Analysis of Intrinsic Peptide Detectability via Integrated Label-Free and SRM-Based Absolute Quantitative Proteomics. J Proteome Res 2016;15:2945-59. [PMID: 27454336 DOI: 10.1021/acs.jproteome.6b00048] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
9
Goeminne LJE, Gevaert K, Clement L. Peptide-level Robust Ridge Regression Improves Estimation, Sensitivity, and Specificity in Data-dependent Quantitative Label-free Shotgun Proteomics. Mol Cell Proteomics 2015;15:657-68. [PMID: 26566788 DOI: 10.1074/mcp.m115.055897] [Citation(s) in RCA: 58] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2015] [Indexed: 01/22/2023]  Open
10
Goeminne LJE, Argentini A, Martens L, Clement L. Summarization vs Peptide-Based Models in Label-Free Quantitative Proteomics: Performance, Pitfalls, and Data Analysis Guidelines. J Proteome Res 2015;14:2457-65. [PMID: 25827922 DOI: 10.1021/pr501223t] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
11
Rosen O, Feldberg L, Gura S, Zichel R. Improved detection of botulinum type E by rational design of a new peptide substrate for endopeptidase-mass spectrometry assay. Anal Biochem 2014;456:50-2. [PMID: 24721293 DOI: 10.1016/j.ab.2014.03.024] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2014] [Revised: 03/26/2014] [Accepted: 03/29/2014] [Indexed: 12/01/2022]
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