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Uriel C, Grenier D, Herranz F, Casado N, Bañuelos J, Rebollar E, Garcia-Moreno I, Gomez AM, López JC. De Novo Access to BODIPY C-Glycosides as Linker-Free Nonsymmetrical BODIPY-Carbohydrate Conjugates. J Org Chem 2024; 89:4042-4055. [PMID: 38438277 PMCID: PMC10949249 DOI: 10.1021/acs.joc.3c02907] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Revised: 02/19/2024] [Accepted: 02/26/2024] [Indexed: 03/06/2024]
Abstract
Recent years have witnessed an increasing interest in the synthesis and study of BODIPY-glycoconjugates. Most of the described synthetic methods toward these derivatives involve postfunctional modifications of the BODIPY core followed by the covalent attachment of the fluorophore and the carbohydrate through a "connector". Conversely, few de novo synthetic approaches to linker-free carbohydrate-BODIPY hybrids have been described. We have developed a reliable modular, de novo, synthetic strategy to linker-free BODIPY-sugar derivatives using the condensation of pyrrole C-glycosides with a pyrrole-carbaldehyde derivative mediated by POCl3. This methodology allows labeling of carbohydrate biomolecules with fluorescent-enough BODIPYs within the biological window, stable in aqueous media, and able to display singlet oxygen generation.
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Affiliation(s)
- Clara Uriel
- Instituto
de Química Orgánica General, IQOG-CSIC, Juan de la Cierva 3, Madrid 28006, Spain
| | - Dylan Grenier
- Instituto
de Química Orgánica General, IQOG-CSIC, Juan de la Cierva 3, Madrid 28006, Spain
| | - Florian Herranz
- Instituto
de Química Orgánica General, IQOG-CSIC, Juan de la Cierva 3, Madrid 28006, Spain
| | - Natalia Casado
- Departamento
de Química Física, Universidad
del Pais Vasco, UPV-EHU, Apartado 644, Bilbao 48080, Spain
| | - Jorge Bañuelos
- Departamento
de Química Física, Universidad
del Pais Vasco, UPV-EHU, Apartado 644, Bilbao 48080, Spain
| | - Esther Rebollar
- Instituto
de Química y Física Blas Cabrera, CSIC, Serrano 119, Madrid 28006, Spain
| | | | - Ana M. Gomez
- Instituto
de Química Orgánica General, IQOG-CSIC, Juan de la Cierva 3, Madrid 28006, Spain
| | - J. Cristobal López
- Instituto
de Química Orgánica General, IQOG-CSIC, Juan de la Cierva 3, Madrid 28006, Spain
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2
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Yang J, Wei S, Zhao J, Zeng W, Shao H, Ma X. An environmentally benign protocol for the synthesis of sugar 1,2-orthoesters in poly(ethylene glycol) dimethyl ether (DMPE). Carbohydr Res 2023; 534:108902. [PMID: 38006705 DOI: 10.1016/j.carres.2023.108902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Revised: 06/30/2023] [Accepted: 07/17/2023] [Indexed: 11/27/2023]
Abstract
An environmentally benign procedure has been developed for the synthesis of sugar orthoesters using anhydrous sodium acetate in poly (ethylene glycol)dimethyl ether (DMPE). Various sugar orthoesers were prepared without using volatile organic solvent and quaternary ammonium salt. The sugar orthoesters were obtained in good to excellent yields.
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Affiliation(s)
- Jian Yang
- Natural Products Research Centre, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Shanqiao Wei
- Natural Products Research Centre, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Jinzhong Zhao
- Natural Products Research Centre, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Wei Zeng
- Natural Products Research Centre, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Huawu Shao
- Natural Products Research Centre, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, PR China.
| | - Xiaofeng Ma
- Natural Products Research Centre, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China.
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3
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Ventura J, Uriel C, Gomez AM, Avellanal-Zaballa E, Bañuelos J, García-Moreno I, Lopez JC. A Concise Synthesis of a BODIPY-Labeled Tetrasaccharide Related to the Antitumor PI-88. Molecules 2021; 26:2909. [PMID: 34068920 PMCID: PMC8156587 DOI: 10.3390/molecules26102909] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2021] [Revised: 05/06/2021] [Accepted: 05/12/2021] [Indexed: 02/04/2023] Open
Abstract
A convergent synthetic route to a tetrasaccharide related to PI-88, which allows the incorporation of a fluorescent BODIPY-label at the reducing-end, has been developed. The strategy, which features the use of 1,2-methyl orthoesters (MeOEs) as glycosyl donors, illustrates the usefulness of suitably-designed BODIPY dyes as glycosyl labels in synthetic strategies towards fluorescently-tagged oligosaccharides.
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Affiliation(s)
- Juan Ventura
- Instituto de Química Orgánica General, IQOG-CSIC, Juan de la Cierva 3, 28006 Madrid, Spain; (J.V.); (C.U.)
| | - Clara Uriel
- Instituto de Química Orgánica General, IQOG-CSIC, Juan de la Cierva 3, 28006 Madrid, Spain; (J.V.); (C.U.)
| | - Ana M. Gomez
- Instituto de Química Orgánica General, IQOG-CSIC, Juan de la Cierva 3, 28006 Madrid, Spain; (J.V.); (C.U.)
| | - Edurne Avellanal-Zaballa
- Departamento de Química Física, Universidad del Pais Vasco-EHU, Apartado 644, 48080 Bilbao, Spain;
| | - Jorge Bañuelos
- Departamento de Química Física, Universidad del Pais Vasco-EHU, Apartado 644, 48080 Bilbao, Spain;
| | | | - Jose Cristobal Lopez
- Instituto de Química Orgánica General, IQOG-CSIC, Juan de la Cierva 3, 28006 Madrid, Spain; (J.V.); (C.U.)
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4
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Isca VMS, Andrade J, Fernandes AS, Paixão P, Uriel C, Gómez AM, Duarte N, Rijo P. In Vitro Antimicrobial Activity of Isopimarane-Type Diterpenoids. Molecules 2020; 25:molecules25184250. [PMID: 32947912 PMCID: PMC7570906 DOI: 10.3390/molecules25184250] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2020] [Revised: 09/13/2020] [Accepted: 09/14/2020] [Indexed: 01/19/2023] Open
Abstract
The antimicrobial evaluation of twelve natural and hemisynthetic isopimarane diterpenes are reported. The compounds were evaluated against a panel of Gram-positive bacteria, including two methicillin-resistant Staphylococcus aureus (MRSA) strains and one vancomycin-resistant Enterococcus (VRE) strain. Only natural compounds 7,15-isopimaradien-19-ol (1) and 19-acetoxy-7,15-isopimaradien-3β-ol (6) showed promising results. Isopimarane (1) was the most active, showing MIC values between 6.76 µM against S. aureus (ATCC 43866) and 216.62 µM against E. faecalis (FFHB 427483) and E. flavescens (ATCC 49996). Compound (6) showed moderated activity against all tested microorganisms (MIC between value 22.54 and 45.07 µM). These compounds were found to be active against the methicillin-sensitive strains of S. aureus (CIP 106760 and FFHB 29593), showing MIC values of 13.55 (1) and 22.54 (6) µM. Both compounds were also active against vancomycin-resistant E. faecalis (ATCC 51299) (MIC values of 54.14 and 45.07 µM, respectively). In addition, the cytotoxicity of nine compounds 7,15-isopimaradien-3β,19-diol (2); mixture: 15-isopimarene-8β-isobutyryloxy-19-ol and 15-isopimarene-8β-butyryloxy-19-ol (3); 3β-acetoxy-7,15-isopimaradiene-19-ol (5); 19-acetoxy-7,15-isopimaradiene-3β-ol (6); 3β,19-diacetoxy-7,15-isopimaradiene (8); 15-isopimarene-8β,19-diol (9); 19-O-β-d-glucopyranoside-7,15-isopimaradiene (10); lagascatriol-16-O-β-d-glucopyranoside (11) and lagascatriol-16-O-α-d-mannopyranoside (12) was evaluated in the human breast cancer cell line MDA-MB-231. Isopimarane (2) was the only compound showing some cytotoxicity. The IC50 value of compound (2) was 15 µM, suggesting a mild antiproliferative activity against these breast cancer cells.
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Affiliation(s)
- Vera M. S. Isca
- CBIOS, Universidade Lusófona Research Center for Biosciences, Campo Grande 376, 1749-024 Lisboa, Portugal; (V.M.S.I.); (J.A.); (A.S.F.)
- Research Institute for Medicines (iMed.ULisboa), Faculty of Pharmacy, Universidade de Lisboa, Av. Prof. Gama Pinto, 1649-003 Lisboa, Portugal; (P.P.); (N.D.)
| | - Joana Andrade
- CBIOS, Universidade Lusófona Research Center for Biosciences, Campo Grande 376, 1749-024 Lisboa, Portugal; (V.M.S.I.); (J.A.); (A.S.F.)
| | - Ana Sofia Fernandes
- CBIOS, Universidade Lusófona Research Center for Biosciences, Campo Grande 376, 1749-024 Lisboa, Portugal; (V.M.S.I.); (J.A.); (A.S.F.)
| | - Paulo Paixão
- Research Institute for Medicines (iMed.ULisboa), Faculty of Pharmacy, Universidade de Lisboa, Av. Prof. Gama Pinto, 1649-003 Lisboa, Portugal; (P.P.); (N.D.)
| | - Clara Uriel
- Instituto de Química Orgánica, CSIC, Juan de la Cierva 3, E-28006 Madrid, Spain; (C.U.); (A.M.G.)
| | - Ana María Gómez
- Instituto de Química Orgánica, CSIC, Juan de la Cierva 3, E-28006 Madrid, Spain; (C.U.); (A.M.G.)
| | - Noélia Duarte
- Research Institute for Medicines (iMed.ULisboa), Faculty of Pharmacy, Universidade de Lisboa, Av. Prof. Gama Pinto, 1649-003 Lisboa, Portugal; (P.P.); (N.D.)
| | - Patrícia Rijo
- CBIOS, Universidade Lusófona Research Center for Biosciences, Campo Grande 376, 1749-024 Lisboa, Portugal; (V.M.S.I.); (J.A.); (A.S.F.)
- Research Institute for Medicines (iMed.ULisboa), Faculty of Pharmacy, Universidade de Lisboa, Av. Prof. Gama Pinto, 1649-003 Lisboa, Portugal; (P.P.); (N.D.)
- Correspondence:
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Khademi Z, Nikoofar K. Applications of alkyl orthoesters as valuable substrates in organic transformations, focusing on reaction media. RSC Adv 2020; 10:30314-30397. [PMID: 35559005 PMCID: PMC9092620 DOI: 10.1039/d0ra05276k] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2020] [Accepted: 07/27/2020] [Indexed: 02/01/2023] Open
Abstract
In this review we focus on applications of alkyl orthoesters as valuable and efficient substrates to perform various classes of two-component and multi-component organic reactions. The article has classified them according to two aspects, which are: (i) a focus on the reaction medium (solvent-free conditions, aqueous media, and organic solvents); and (ii) an examination of product structures. Reaction accomplishment under solvent-free conditions is an eco-friendly process with the absence of volatile toxic solvents, which puts it in line with green chemistry goals. Water is an interesting choice in organic transformations due to its inexpensiveness and safety. The authors hope their assessment will help chemists to attain new approaches for utilizing alkyl orthoesters in various organic synthetic methods. The review covers the corresponding literature up to the beginning of 2020. In this review we focus on applications of alkyl orthoesters as valuable and efficient substrates to perform various classes of two-component and multi-component organic reactions.![]()
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Affiliation(s)
- Zahra Khademi
- Department of Chemistry, Faculty of Physics & Chemistry, Alzahra University P.O. Box 1993891176 Tehran Iran +982188041344 +982188041344
| | - Kobra Nikoofar
- Department of Chemistry, Faculty of Physics & Chemistry, Alzahra University P.O. Box 1993891176 Tehran Iran +982188041344 +982188041344
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6
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Uriel C, Permingeat C, Ventura J, Avellanal-Zaballa E, Bañuelos J, García-Moreno I, Gómez AM, Lopez JC. BODIPYs as Chemically Stable Fluorescent Tags for Synthetic Glycosylation Strategies towards Fluorescently Labeled Saccharides. Chemistry 2020; 26:5388-5399. [PMID: 31999023 DOI: 10.1002/chem.201905780] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2019] [Indexed: 12/11/2022]
Abstract
A series of fluorescent boron-dipyrromethene (BODIPY, 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene) dyes have been designed to participate, as aglycons, in synthetic oligosaccharide protocols. As such, they served a dual purpose: first, by being incorporated at the beginning of the process (at the reducing-end of the growing saccharide moiety), they can function as fluorescent glycosyl tags, facilitating the detection and purification of the desired glycosidic intermediates, and secondly, the presence of these chromophores on the ensuing compounds grants access to fluorescently labeled saccharides. In this context, a sought-after feature of the fluorescent dyes has been their chemical robustness. Accordingly, some BODIPY derivatives described in this work can withstand the reaction conditions commonly employed in the chemical synthesis of saccharides; namely, glycosylation and protecting-group manipulations. Regarding their photophysical properties, the BODIPY-labeled saccharides obtained in this work display remarkable fluorescence efficiency in water, reaching quantum yield values up to 82 %, as well as notable lasing efficiencies and photostabilities.
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Affiliation(s)
- Clara Uriel
- Instituto de Química Organica General (IQOG-CSIC), Juan de la Cierva 3, 28006, Madrid, Spain
| | - Caterina Permingeat
- Instituto de Química Organica General (IQOG-CSIC), Juan de la Cierva 3, 28006, Madrid, Spain
| | - Juan Ventura
- Instituto de Química Organica General (IQOG-CSIC), Juan de la Cierva 3, 28006, Madrid, Spain
| | | | - Jorge Bañuelos
- Dpto. Química Física, Universidad del País Vasco (UPV/EHU), Aptdo. 644, 48080, Bilbao, Spain
| | | | - Ana M Gómez
- Instituto de Química Organica General (IQOG-CSIC), Juan de la Cierva 3, 28006, Madrid, Spain
| | - J Cristobal Lopez
- Instituto de Química Organica General (IQOG-CSIC), Juan de la Cierva 3, 28006, Madrid, Spain
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7
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Uriel C, Sola-Llano R, Bañuelos J, Gomez AM, Lopez JC. A Malonyl-Based Scaffold for Conjugatable Multivalent Carbohydrate-BODIPY Presentations. Molecules 2019; 24:E2050. [PMID: 31146429 PMCID: PMC6600552 DOI: 10.3390/molecules24112050] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Revised: 05/23/2019] [Accepted: 05/27/2019] [Indexed: 01/05/2023] Open
Abstract
A concise synthetic route from methylmalonate to a tetravalent aliphatic scaffold has been developed. The ensuing tetra-tethered derivative is equipped with two hydroxyl groups, as well as orthogonal alkene and alkyne functionalities. The usefulness of the scaffold has been demonstrated with the preparation of two representative multivalent derivatives: (i) a tetravalent compound containing two D-mannose units, one fluorescent boron-dipyrromethene (BODIPY) dye and a suitably functionalized amino acid and (ii) by way of dimerization and saponification, a water-soluble tetramannan derivative containing two fluorescent BODIPY units. Additionally, photophysical measurements conducted on these derivatives support the viability of the herein designed single and double BODIPY-labeled carbohydrate-based clusters as fluorescent markers.
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Affiliation(s)
- Clara Uriel
- Instituto de Química Orgánica General, Consejo Superior de Investigaciones Científicas (IQOG-CSIC), Juan de la Cierva 3, 28006 Madrid, Spain.
| | - Rebeca Sola-Llano
- Departamento Química Física, Universidad del País Vasco (UPV/EHU), Aptdo 644, 48080 Bilbao, Spain.
| | - Jorge Bañuelos
- Departamento Química Física, Universidad del País Vasco (UPV/EHU), Aptdo 644, 48080 Bilbao, Spain.
| | - Ana M Gomez
- Instituto de Química Orgánica General, Consejo Superior de Investigaciones Científicas (IQOG-CSIC), Juan de la Cierva 3, 28006 Madrid, Spain.
| | - J Cristobal Lopez
- Instituto de Química Orgánica General, Consejo Superior de Investigaciones Científicas (IQOG-CSIC), Juan de la Cierva 3, 28006 Madrid, Spain.
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Affiliation(s)
- Michael Martin Nielsen
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, 2100 Copenhagen, Denmark
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