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Tarı GÖ, Aydemir E. Experimental and DFT study of (E)-4-bromo-2(((3-chloro-4-(4-chlorophenoxy)phenyl)imino)methyl)-5-fluorophenol: Molecular and Electronic Properties in Solvent Media. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134880] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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Hasan Tanak, Karataş Ş, Meral S, Ağar AA. Synthesis, Molecular Structure and Quantum Chemical Studies of N-(2-Fluorophenyl)-1-(5-Nitrothiophen-2-yl)methanimine. CRYSTALLOGR REP+ 2020. [DOI: 10.1134/s106377452007024x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Cinar EB, Faizi MSH, Yagci NK, Dogan OE, Aydin AS, Agar E, Dege N, Mashrai A. Crystal structure, Hirshfeld surface analysis and DFT studies of ( E)-4-methyl-2-{[(2-methyl-3-nitro-phen-yl)imino]-meth-yl}phenol. Acta Crystallogr E Crystallogr Commun 2020; 76:1551-1556. [PMID: 33117562 PMCID: PMC7534237 DOI: 10.1107/s2056989020011652] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Accepted: 08/25/2020] [Indexed: 11/10/2022]
Abstract
The title compound, C15H14N2O3, was prepared by condensation of 2-hy-droxy-5-methyl-benzaldehyde and 2-methyl-3-nitro-phenyl-amine in ethanol. The configuration of the C=N bond is E. An intra-molecular O-H⋯N hydrogen bond is present, forming an S(6) ring motif and inducing the phenol ring and the Schiff base to be nearly coplanar [C-C-N-C torsion angle of 178.53 (13)°]. In the crystal, mol-ecules are linked by C-H⋯O inter-actions, forming chains along the b-axis direction. The Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from H⋯H (37.2%), C⋯H (30.7%) and O⋯H (24.9%) inter-actions. The gas phase density functional theory (DFT) optimized structure at the B3LYP/ 6-311 G(d,p) level is compared to the experimentally determined mol-ecular structure in the solid state. The HOMO-LUMO behaviour was elucidated to determine the energy gap.
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Affiliation(s)
- Emine Berrin Cinar
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, Samsun, Turkey
| | - Md. Serajul Haque Faizi
- Department of Chemistry, Langat Singh College, B.R.A. Bihar University, Muzaffarpur, Bihar-842001, India
| | | | - Onur Erman Dogan
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of, Chemistry, Samsun, Turkey
| | - Alev Sema Aydin
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of, Chemistry, Samsun, Turkey
| | - Erbil Agar
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of, Chemistry, Samsun, Turkey
| | - Necmi Dege
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, Samsun, Turkey
| | - Ashraf Mashrai
- Department of Pharmacy, University of Science and Technology, Ibb Branch, Ibb, Yemen
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Toy M, Tanak H, Şenöz H. Experimental and DFT computational studies of novel 3-(p-cyanophenyl)-5-(o,m,p-nitrophenyl)-5-phenylformazans. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128178] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Faizi MSH, Cinar EB, Aydin AS, Agar E, Dege N, Mashrai A. Crystal structure, Hirshfeld surface analysis and DFT studies of 2-[(2-hy-droxy-5-methyl-benzyl-idene)amino]-benzo-nitrile. Acta Crystallogr E Crystallogr Commun 2020; 76:1195-1200. [PMID: 32843998 PMCID: PMC7405566 DOI: 10.1107/s2056989020008907] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2020] [Accepted: 06/30/2020] [Indexed: 11/10/2022]
Abstract
The title compound, C15H12N2O, was synthesized by condensation reaction of 2-hy-droxy-5-methyl-benzaldehyde and 2-amino-benzo-nitrile, and crystallizes in the ortho-rhom-bic space group Pbca. The phenol ring is inclined to the benzo-nitrile ring by 25.65 (3)°. The configuration about the C=N bond is E, stabilized by a strong intra-molecular O-H⋯N hydrogen bond that forms an S(6) ring motif. In the crystal, C-H⋯O and C-H⋯N inter-actions lead to the formation of sheets perpendicular to the a axis. C-H⋯π inter-actions, forming polymeric chains along the a-axis direction, connect these sheets into a three-dimensional network. A Hirshfeld surface analysis indicates that the most important contributions for the packing arrangement are from H⋯H and C⋯H/H⋯C inter-actions. The density functional theory (DFT) optimized structure at the B3LYP/6-311 G(d,p) level is compared with the experimentally determined mol-ecular structure and the HOMO-LUMO energy gap is given.
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Affiliation(s)
- Md. Serajul Haque Faizi
- Department of Chemistry, Langat Singh College, B.R.A. Bihar University, Muzaffarpur, Bihar-842001, India
| | - Emine Berrin Cinar
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, Samsun, Turkey
| | - Alev Sema Aydin
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Chemistry, Samsun, Turkey
| | - Erbil Agar
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Chemistry, Samsun, Turkey
| | - Necmi Dege
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, Samsun, Turkey
| | - Ashraf Mashrai
- Department of Pharmacy, University of Science and Technology, Ibb Branch, Ibb, Yemen
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Faizi MSH, Cinar EB, Dogan OE, Aydin AS, Agar E, Dege N, Mashrai A. Crystal structure, Hirshfeld surface analysis and DFT studies of 4-methyl-2-({[4-(tri-fluoro-meth-yl)phen-yl]imino}-meth-yl)phenol. Acta Crystallogr E Crystallogr Commun 2020; 76:1325-1330. [PMID: 32844023 PMCID: PMC7405564 DOI: 10.1107/s2056989020009615] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2020] [Accepted: 07/14/2020] [Indexed: 11/29/2022]
Abstract
The title compound, C15H12F3NO, crystallizes with one mol-ecule in the asymmetric unit. The configuration of the C=N bond is E and there is an intra-molecular O-H⋯N hydrogen bond present, forming an S(6) ring motif. The dihedral angle between the mean planes of the phenol and the 4-tri-fluoro-methyl-phenyl rings is 44.77 (3)°. In the crystal, mol-ecules are linked by C-H⋯O inter-actions, forming polymeric chains extending along the a-axis direction. The Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from C⋯H/H⋯C (29.2%), H⋯H (28.6%), F⋯H/H⋯F (25.6%), O⋯H/H⋯O (5.7%) and F⋯F (4.6%) inter-actions. The density functional theory (DFT) optimized structure at the B3LYP/6-311 G(d,p) level is compared with the experimentally determined mol-ecular structure in the solid state. The HOMO-LUMO behaviour was elucidated to determine the energy gap. The crystal studied was refined as an inversion twin.
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Affiliation(s)
- Md. Serajul Haque Faizi
- Department of Chemistry, Langat Singh College, B.R.A. Bihar University, Muzaffarpur, Bihar-842001, India
| | - Emine Berrin Cinar
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, Samsun, Turkey
| | - Onur Erman Dogan
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Chemistry, Samsun, Turkey
| | - Alev Sema Aydin
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Chemistry, Samsun, Turkey
| | - Erbil Agar
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Chemistry, Samsun, Turkey
| | - Necmi Dege
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, Samsun, Turkey
| | - Ashraf Mashrai
- Department of Pharmacy, University of Science and Technology, Ibb Branch, Ibb, Yemen
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Synthesis, characterization, Hirshfeld surface analysis and computational studies of 1-methylpiperazine-1,4-diium bis(hydrogen oxalate): [C5H14N2](HC2O4)2. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128075] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Kan Kaynar N, Tanak H, Macit M, Özdemir N. Crystal structure and DFT computational studies of ( E)-2,4-di- tert-butyl-6-{[3-(tri-fluoro-meth-yl)benz-yl]imino-meth-yl}phenol. Acta Crystallogr E Crystallogr Commun 2020; 76:732-735. [PMID: 32431942 PMCID: PMC7199268 DOI: 10.1107/s205698902000537x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2020] [Accepted: 04/16/2020] [Indexed: 11/17/2022]
Abstract
The title compound, C23H28F3NO, is an ortho-hy-droxy Schiff base compound, which adopts the enol-imine tautomeric form in the solid state. The mol-ecular structure is not planar and the dihedral angle between the planes of the aromatic rings is 85.52 (10)°. The tri-fluoro-methyl group shows rotational disorder over two sites, with occupancies of 0.798 (6) and 0.202 (6). An intra-molecular O-H⋯N hydrogen bonding generates an S(6) ring motif. The crystal structure is consolidated by C-H⋯π inter-actions. The mol-ecular structure was optimized via density functional theory (DFT) methods with the B3LYP functional and LanL2DZ basis set. The theoretical structure is in good agreement with the experimental data. The frontier orbitals and mol-ecular electrostatic potential map were also examined by DFT computations.
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Affiliation(s)
- Nihal Kan Kaynar
- Department of Physics, Faculty of Arts & Science, Amasya University, TR-05100, Amasya, Turkey
| | - Hasan Tanak
- Department of Physics, Faculty of Arts & Science, Amasya University, TR-05100, Amasya, Turkey
| | - Mustafa Macit
- Department of Chemistry, Faculty of Arts & Science, Ondokuz Mayıs University, TR-55139 Samsun, Turkey
| | - Namık Özdemir
- Faculty of Education, Department of Mathematics and, Science Education, Division of Physics Education, Ondokuz Mayıs University, TR-55139 Samsun, Turkey
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