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Pineda-Castañeda HM, Maldonado-Villamil M, Parra-Giraldo CM, Leal-Castro AL, Fierro-Medina R, Rivera-Monroy ZJ, García-Castañeda JE. Peptide-Resorcinarene Conjugates Obtained via Click Chemistry: Synthesis and Antimicrobial Activity. Antibiotics (Basel) 2023; 12:antibiotics12040773. [PMID: 37107135 PMCID: PMC10135297 DOI: 10.3390/antibiotics12040773] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 04/12/2023] [Accepted: 04/14/2023] [Indexed: 04/29/2023] Open
Abstract
Antimicrobial resistance (AMR) is one of the top ten threats to public health, as reported by the World Health Organization (WHO). One of the causes of the growing AMR problem is the lack of new therapies and/or treatment agents; consequently, many infectious diseases could become uncontrollable. The need to discover new antimicrobial agents that are alternatives to the existing ones and that allow mitigating this problem has increased, due to the rapid and global expansion of AMR. Within this context, both antimicrobial peptides (AMPs) and cyclic macromolecules, such as resorcinarenes, have been proposed as alternatives to combat AMR. Resorcinarenes present multiple copies of antibacterial compounds in their structure. These conjugate molecules have exhibited antifungal and antibacterial properties and have also been used in anti-inflammatory, antineoplastic, and cardiovascular therapies, as well as being useful in drug and gene delivery systems. In this study, it was proposed to obtain conjugates that contain four copies of AMP sequences over a resorcinarene core. Specifically, obtaining (peptide)4-resorcinarene conjugates derived from LfcinB (20-25): RRWQWR and BF (32-34): RLLR was explored. First, the synthesis routes that allowed obtaining: (a) alkynyl-resorcinarenes and (b) peptides functionalized with the azide group were established. These precursors were used to generate (c) (peptide)4-resorcinarene conjugates by azide-alkyne cycloaddition CuAAC, a kind of click chemistry. Finally, the conjugates' biological activity was evaluated: antimicrobial activity against reference strains and clinical isolates of bacteria and fungi, and the cytotoxic activity over erythrocytes, fibroblast, MCF-7, and HeLa cell lines. Our results allowed establishing a new synthetic route, based on click chemistry, for obtaining macromolecules derived from resorcinarenes functionalized with peptides. Moreover, it was possible to identify promising antimicrobial chimeric molecules that may lead to advances in the development of new therapeutic agents.
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Affiliation(s)
| | | | - Claudia Marcela Parra-Giraldo
- Human Proteomics and Mycosis Unit, Infectious Diseases Research Group, Department of Microbiology, Pontificia Universidad Javeriana, Bogotá 110231, Colombia
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Zouhir A, Souiai O, Harigua E, Cherif A, Chaalia AB, Sebei K. ANTIPSEUDOBASE: Database of Antimicrobial Peptides and Essential Oils Against Pseudomonas. Int J Pept Res Ther 2023. [DOI: 10.1007/s10989-023-10511-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/28/2023]
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Pineda-Castañeda H, Rivera-Monroy ZJ, Maldonado M. Copper(I)-Catalyzed Alkyne-Azide Cycloaddition (CuAAC) "Click" Reaction: A Powerful Tool for Functionalizing Polyhydroxylated Platforms. ACS OMEGA 2023; 8:3650-3666. [PMID: 36743057 PMCID: PMC9893463 DOI: 10.1021/acsomega.2c06269] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Accepted: 12/23/2022] [Indexed: 05/13/2023]
Abstract
Click chemistry is currently one of the most used tools for the generation of complex organic molecules. The advantages of using click chemistry in organic synthesis are remarkable; in many cases, the reactions occur under mild conditions and are free of solvents, with high yields and short reaction times. This makes it an extraordinarily effective and viable alternative for obtaining complex/conjugated molecules. In this review, the use of click chemistry CuAAC is especially emphasized for polyhydroxylated platforms such as resorcinarenes or calixarenes, focusing mainly on aspects of synthesis, specifically conditions, reagents, and methodologies.
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Affiliation(s)
- Héctor
Manuel Pineda-Castañeda
- Chemistry
Department, Universidad Nacional de Colombia,
Bogotá, Carrera 45 No 26-85, Building 451, office 409, Bogotá 11321, Colombia
| | - Zuly Jenny Rivera-Monroy
- Chemistry
Department, Universidad Nacional de Colombia,
Bogotá, Carrera 45 No 26-85, Building 451, office 409, Bogotá 11321, Colombia
| | - Mauricio Maldonado
- Chemistry
Department, Universidad Nacional de Colombia,
Bogotá, Carrera 45 No 26-85, Building 451, office 409, Bogotá 11321, Colombia
- Email
for M.M.:
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Gan BH, Gaynord J, Rowe SM, Deingruber T, Spring DR. The multifaceted nature of antimicrobial peptides: current synthetic chemistry approaches and future directions. Chem Soc Rev 2021; 50:7820-7880. [PMID: 34042120 PMCID: PMC8689412 DOI: 10.1039/d0cs00729c] [Citation(s) in RCA: 184] [Impact Index Per Article: 61.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Indexed: 12/13/2022]
Abstract
Bacterial infections caused by 'superbugs' are increasing globally, and conventional antibiotics are becoming less effective against these bacteria, such that we risk entering a post-antibiotic era. In recent years, antimicrobial peptides (AMPs) have gained significant attention for their clinical potential as a new class of antibiotics to combat antimicrobial resistance. In this review, we discuss several facets of AMPs including their diversity, physicochemical properties, mechanisms of action, and effects of environmental factors on these features. This review outlines various chemical synthetic strategies that have been applied to develop novel AMPs, including chemical modifications of existing peptides, semi-synthesis, and computer-aided design. We will also highlight novel AMP structures, including hybrids, antimicrobial dendrimers and polypeptides, peptidomimetics, and AMP-drug conjugates and consider recent developments in their chemical synthesis.
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Affiliation(s)
- Bee Ha Gan
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK.
| | - Josephine Gaynord
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK.
| | - Sam M Rowe
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK.
| | - Tomas Deingruber
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK.
| | - David R Spring
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK.
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Pineda-Castañeda HM, Huertas-Ortiz KA, Leal-Castro AL, Vargas-Casanova Y, Parra-Giraldo CM, García-Castañeda JE, Rivera-Monroy ZJ. Designing Chimeric Peptides: A Powerful Tool for Enhancing Antibacterial Activity. Chem Biodivers 2020; 18:e2000885. [PMID: 33369144 DOI: 10.1002/cbdv.202000885] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Accepted: 12/21/2020] [Indexed: 11/10/2022]
Abstract
Chimeric peptides containing short sequences derived from bovine Lactoferricin (LfcinB) and Buforin II (BFII) were synthetized using solid-phase peptide synthesis (SPPS) and characterized via reversed-phase liquid chromatography and mass spectrometry. The chimeras were obtained with high purity, demonstrating their synthetic viability. The chimeras' antibacterial activity against Gram-positive and Gram-negative strains was evaluated. Our results showed that all the chimeras exhibited greater antibacterial activity against the evaluated strains than the individual sequences, suggesting that chemical binding of short sequences derived from AMPs significantly increased the antibacterial activity. For each strain, the chimera with the best antibacterial activity exerted a bacteriostatic and/or bactericidal effect, which was dependent on the concentration. It was found that: (i) the antibacterial activity of a chimera is mainly influenced by the linked sequences, the palindromic motif RLLRRLLR being the most relevant one; (ii) the inclusion of a spacer between the short sequences did not significantly affect the chimera's synthesis process; however, it enhanced its antibacterial activity against Gram-negative and Gram-positive strains; on the other hand, (iii) the replacement of Arg with Lys in the LfcinB or BFII sequences improved the chimeras' synthesis process without significantly affecting their antibacterial activity. These results illustrate the great importance of the synthesis of chimeric peptides for the generation of promising antibacterial peptides.
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Affiliation(s)
- Héctor Manuel Pineda-Castañeda
- Chemistry Department, Universidad Nacional de Colombia, Carrera 45 No. 26-85, Building 451, Office 409, Bogotá, Zip Code 11321, Colombia
| | - Kevin Andrey Huertas-Ortiz
- Chemistry Department, Universidad Nacional de Colombia, Carrera 45 No. 26-85, Building 451, Office 409, Bogotá, Zip Code 11321, Colombia
| | - Aura Lucía Leal-Castro
- Medicine Faculty, Universidad Nacional de Colombia, Carrera 45 No. 26-85, Building 451, Office 409, Bogotá, Zip Code 11321, Colombia
| | - Yerly Vargas-Casanova
- Microbiology Department, Pontificia Universidad Javeriana, Carrera 7 No. 40-62, Bogotá, Zip Code 110231, Colombia
| | | | - Javier Eduardo García-Castañeda
- Pharmacy Department, Universidad Nacional de Colombia, Carrera, 45 No. 26-85, Building 450, Office 213, Bogotá, Zip Code 11321, Colombia
| | - Zuly Jenny Rivera-Monroy
- Chemistry Department, Universidad Nacional de Colombia, Carrera 45 No. 26-85, Building 451, Office 409, Bogotá, Zip Code 11321, Colombia
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Pineda-Castañeda HM, Insuasty-Cepeda DS, Niño-Ramírez VA, Curtidor H, Rivera-Monroy ZJ. Designing Short Peptides: A Sisyphean Task? CURR ORG CHEM 2020. [DOI: 10.2174/1385272824999200910094034] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Over the last few years, short peptides have become a powerful tool in basic and
applied research, with different uses like diagnostic, antimicrobial peptides, human health
promoters or bioactive peptides, therapeutic treatments, templates for peptidomimetic design,
and peptide-based vaccines. In this endeavor, different approaches and technologies
have been explored, such as bioinformatics, large-scale peptide synthesis, omics sciences,
structure-activity relationship studies, and a biophysical approach, among others, seeking to
obtain the shortest sequence with the best activity. The advantage of short peptides lies in
their stability, ease of production, safety, and low cost. There are many strategies for designing
short peptides with biomedical and industrial applications (targeting the structure, length,
charge, or polarity) or as a starting point for improving their properties (sequence data base,
de novo sequences, templates, or organic scaffolds). In peptide design, it is necessary to keep in mind factors
such as the application (peptidomimetic, immunogen, antimicrobial, bioactive, or protein-protein interaction
inhibitor), the expected target (membrane cell, nucleus, receptor proteins, or immune system), and particular
characteristics (shorter, conformationally constrained, cycled, charged, flexible, polymerized, or pseudopeptides).
This review summarizes the different synthetic approaches and strategies used to design new peptide analogs,
highlighting the achievements, constraints, and advantages of each.
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Affiliation(s)
| | | | - Víctor A. Niño-Ramírez
- Chemistry Department, Sciences Faculty, Universidad Nacional de Colombia, Bogota, Colombia
| | | | - Zuly J. Rivera-Monroy
- Chemistry Department, Sciences Faculty, Universidad Nacional de Colombia, Bogota, Colombia
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Huan Y, Kong Q, Mou H, Yi H. Antimicrobial Peptides: Classification, Design, Application and Research Progress in Multiple Fields. Front Microbiol 2020; 11:582779. [PMID: 33178164 PMCID: PMC7596191 DOI: 10.3389/fmicb.2020.582779] [Citation(s) in RCA: 629] [Impact Index Per Article: 157.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2020] [Accepted: 09/23/2020] [Indexed: 12/12/2022] Open
Abstract
Antimicrobial peptides (AMPs) are a class of small peptides that widely exist in nature and they are an important part of the innate immune system of different organisms. AMPs have a wide range of inhibitory effects against bacteria, fungi, parasites and viruses. The emergence of antibiotic-resistant microorganisms and the increasing of concerns about the use of antibiotics resulted in the development of AMPs, which have a good application prospect in medicine, food, animal husbandry, agriculture and aquaculture. This review introduces the progress of research on AMPs comprehensively and systematically, including their classification, mechanism of action, design methods, environmental factors affecting their activity, application status, prospects in various fields and problems to be solved. The research progress on antivirus peptides, especially anti-coronavirus (COVID-19) peptides, has been introduced given the COVID-19 pandemic worldwide in 2020.
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Affiliation(s)
| | - Qing Kong
- College of Food Science and Engineering, Ocean University of China, Qingdao, China
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