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Fan KT, Xu Y, Hegeman AD. Elevated Temperature Effects on Protein Turnover Dynamics in Arabidopsis thaliana Seedlings Revealed by 15N-Stable Isotope Labeling and ProteinTurnover Algorithm. Int J Mol Sci 2024; 25:5882. [PMID: 38892074 PMCID: PMC11172382 DOI: 10.3390/ijms25115882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2024] [Revised: 05/24/2024] [Accepted: 05/26/2024] [Indexed: 06/21/2024] Open
Abstract
Global warming poses a threat to plant survival, impacting growth and agricultural yield. Protein turnover, a critical regulatory mechanism balancing protein synthesis and degradation, is crucial for the cellular response to environmental changes. We investigated the effects of elevated temperature on proteome dynamics in Arabidopsis thaliana seedlings using 15N-stable isotope labeling and ultra-performance liquid chromatography-high resolution mass spectrometry, coupled with the ProteinTurnover algorithm. Analyzing different cellular fractions from plants grown under 22 °C and 30 °C growth conditions, we found significant changes in the turnover rates of 571 proteins, with a median 1.4-fold increase, indicating accelerated protein dynamics under thermal stress. Notably, soluble root fraction proteins exhibited smaller turnover changes, suggesting tissue-specific adaptations. Significant turnover alterations occurred with redox signaling, stress response, protein folding, secondary metabolism, and photorespiration, indicating complex responses enhancing plant thermal resilience. Conversely, proteins involved in carbohydrate metabolism and mitochondrial ATP synthesis showed minimal changes, highlighting their stability. This analysis highlights the intricate balance between proteome stability and adaptability, advancing our understanding of plant responses to heat stress and supporting the development of improved thermotolerant crops.
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Affiliation(s)
- Kai-Ting Fan
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei 115, Taiwan;
| | - Yuan Xu
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
| | - Adrian D. Hegeman
- Departments of Horticultural Science and Plant and Microbial Biology, University of Minnesota, Twin Cities, MN 55108, USA
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Varshney RK, Barmukh R, Bentley A, Nguyen HT. Exploring the genomics of abiotic stress tolerance and crop resilience to climate change. THE PLANT GENOME 2024; 17:e20445. [PMID: 38481118 DOI: 10.1002/tpg2.20445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 02/21/2024] [Indexed: 03/22/2024]
Affiliation(s)
- Rajeev K Varshney
- WA State Agricultural Biotechnology Centre, Centre for Crop and Food Innovation, Food Futures Institute, Murdoch University, Murdoch, Western Australia, Australia
| | - Rutwik Barmukh
- WA State Agricultural Biotechnology Centre, Centre for Crop and Food Innovation, Food Futures Institute, Murdoch University, Murdoch, Western Australia, Australia
| | - Alison Bentley
- ANU College of Science, The Australian National University, Canberra, Australian Capital Territory, Australia
| | - Henry T Nguyen
- Division of Plant Science and Technology, University of Missouri, Columbia, Missouri, USA
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Kumar H, Chugh V, Kumar M, Gupta V, Prasad S, Kumar S, Singh CM, Kumar R, Singh BK, Panwar G, Kumar M. Investigating the impact of terminal heat stress on contrasting wheat cultivars: a comprehensive analysis of phenological, physiological, and biochemical traits. FRONTIERS IN PLANT SCIENCE 2023; 14:1189005. [PMID: 37711289 PMCID: PMC10499387 DOI: 10.3389/fpls.2023.1189005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/18/2023] [Accepted: 07/25/2023] [Indexed: 09/16/2023]
Abstract
Terminal heat stress has become one of the major threats due to global climate change which is significantly affecting the production and productivity of wheat crop. Therefore, it is necessary to identify key traits and genotypes to breed heat-tolerant wheat. The present study was undertaken with the objective of comparing the effects of heat stress (HSE) and extended heat stress (EHSE) on phenological-physio-biochemical traits of contrasting heat-tolerant and heat-susceptible genotypes during the reproductive phase. Phenological traits exhibited significant reduction under EHSE compared to HSE. Heat-tolerant genotypes maintained balanced phenological-physio-biochemical traits, while heat-sensitive genotypes showed significant reductions under both stress regimes. Among phenological traits, DM (R2 = 0.52) and BY (R2 = 0.44) have shown a positive effect on seed yield, indicating that biomass and crop duration contributed to the yield advantage under stress. During the grain filling stage, both the normalized difference vegetation index (NDVI) and chlorophyll (Chl) exhibited consistently positive impacts on grain yield under both HSE and EHSE conditions. This could be attributed to the enhanced photosynthesis resulting from delayed senescence and improved assimilate remobilization under terminal heat stress. The biochemical activity of superoxide dismutase (SOD), peroxidase (POX), and ascorbate peroxidase (APX) was induced in tolerant genotypes under HSE. The correlation of canopy temperature with phenological-physio-biochemical traits remained static under HSE and EHSE, suggesting CT as the best selection parameter for heat tolerance. The traits showing a positive association with yield and that are less affected under stress could be used for selecting tolerant genotypes under stress environments. These tolerant genotypes can be used to develop mapping populations to decipher the genes conferring tolerance as well as to study the molecular basis of tolerance.
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Affiliation(s)
- Hitesh Kumar
- Department of Genetics and Plant Breeding, College of Agriculture, Banda University of Agriculture and Technology, Banda, Uttar Pradesh, India
| | - Vishal Chugh
- Department of Basic and Social Sciences, College of Horticulture, Banda University of Agriculture and Technology, Banda, Uttar Pradesh, India
| | - Manoj Kumar
- Department of Genetics and Plant Breeding, College of Agriculture, Banda University of Agriculture and Technology, Banda, Uttar Pradesh, India
| | - Vikas Gupta
- Division of Crop Improvement, ICAR-Indian Institute of Wheat and Barley Research, Karnal, Haryana, India
| | - Shambhoo Prasad
- Department of Plant Molecular Biology and Genetic Engineering, Acharya Narendra Deva University of Agriculture and Technology Kumarganj, Ayodhya, Uttar Pradesh, India
| | - Satish Kumar
- Division of Crop Improvement, ICAR-Indian Institute of Wheat and Barley Research, Karnal, Haryana, India
| | - Chandra Mohan Singh
- Department of Genetics and Plant Breeding, College of Agriculture, Banda University of Agriculture and Technology, Banda, Uttar Pradesh, India
| | - Rahul Kumar
- Department of Plant Science and Landscape Architecture, University of Connecticut, Storrs, CT, United States
| | - Bhupendra Kumar Singh
- Department of Entomology, College of Agriculture, Banda University of Agriculture and Technology, Banda, Uttar Pradesh, India
| | - Gurusharan Panwar
- Department of Agronomy, College of Agriculture, Banda University of Agriculture and Technology, Banda, Uttar Pradesh, India
| | - Mukul Kumar
- Department of Genetics and Plant Breeding, College of Agriculture, Banda University of Agriculture and Technology, Banda, Uttar Pradesh, India
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Jin X, Ackah M, Acheampong A, Zhang Q, Wang L, Lin Q, Qiu C, Zhao W. Genome-Wide Identification of Candidate Genes Associated with Heat Stress in Mulberry ( Morus alba L.). Curr Issues Mol Biol 2023; 45:4151-4167. [PMID: 37232733 DOI: 10.3390/cimb45050264] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Revised: 04/11/2023] [Accepted: 05/04/2023] [Indexed: 05/27/2023] Open
Abstract
Mulberry (Morus alba L.) is an economically important plant for the silk industry and has the possibility of contributing immensely to Chinese pharmacopeia because of its health benefits. Domesticated silkworms feed only on mulberry leaves, meaning that the worms' survival depends on the mulberry tree. Mulberry production is threatened by climate change and global warming. However, the regulatory mechanisms of mulberry responses to heat are poorly understood. We performed transcriptome analysis of high-temperature-stressed (42 °C) M. alba seedlings using RNA-Seq technologies. A total of 703 differentially expressed genes (DEGs) were discovered from 18,989 unigenes. Among these, 356 were up-regulated, and 347 were down-regulated. KEGG analysis revealed that most DEGs were enriched in valine, leucine and isoleucine degradation, and in starch and sucrose metabolism, alpha-linolenic acid metabolism, carotenoid biosynthesis and galactose metabolism, among others. In addition, TFs such as the NAC, HSF, IAA1, MYB, AP2, GATA, WRKY, HLH and TCP families were actively involved in response to high temperatures. Moreover, we used RT-qPCR to confirm the expression changes of eight genes under heat stress observed in the RNA-Seq analysis. This study provides M. alba transcriptome profiles under heat stress and provides theoretical bases to researchers for better understanding mulberry heat response mechanisms and breeding heat-tolerant mulberry plants.
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Affiliation(s)
- Xin Jin
- Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang 212100, China
| | - Michael Ackah
- Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang 212100, China
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Adolf Acheampong
- Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang 212100, China
| | - Qiaonan Zhang
- Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang 212100, China
| | - Lei Wang
- Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang 212100, China
| | - Qiang Lin
- Guangxi Sericultural Research Institute, Guangxi Zhuang Autonomous Regin, Nanning 530007, China
| | - Changyu Qiu
- Guangxi Sericultural Research Institute, Guangxi Zhuang Autonomous Regin, Nanning 530007, China
| | - Weiguo Zhao
- Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang 212100, China
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