1
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Li X, Fan W, Wang L, Jiang J, Du Y, Fang W, Trabelsi T, Francisco JS, Yang J, Li J, Zhou M, Zeng X. Direct Observation of HOON Intermediate in the Photochemistry of HONO. J Am Chem Soc 2024; 146:20494-20499. [PMID: 39001838 DOI: 10.1021/jacs.4c06851] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/15/2024]
Abstract
The photochemistry of nitrous acid (HONO), encompassing dissociation into OH and NO as well as the reverse association reaction, plays a pivotal role in atmospheric chemistry. Here, we report the direct observation of nitrosyl-O-hydroxide (HOON) in the photochemistry of HONO, employing matrix-isolation IR and UV-vis spectroscopy. Despite a barrier of approximately 30 kJ/mol, HOON undergoes spontaneous rearrangement to the more stable HONO isomer through quantum mechanical tunneling, with a half-life of 28 min at 4 K. Kinetic isotope effects and instanton theory calculations reveal that the tunneling process involves the concerted motion of the NO moiety (65.2%) and the hydrogen atom (32.3%). Our findings underscore the significance of HOON as a key intermediate in the photolytic dissociation-association cycle of HONO at low temperatures.
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Affiliation(s)
- Xiaolong Li
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai 200433, China
| | - Wenbin Fan
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai 200433, China
| | - Lina Wang
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai 200433, China
| | - Junjie Jiang
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai 200433, China
| | - Yanqi Du
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai 200433, China
| | - Wei Fang
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai 200433, China
| | - Tarek Trabelsi
- Department of Earth and Environment Science, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6243, United States
| | - Joseph S Francisco
- Department of Earth and Environment Science, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6243, United States
| | - Jiawei Yang
- School of Chemistry and Chemical Engineering and Chongqing Key Laboratory of Theoretical and Computational Chemistry, Chongqing University, Chongqing 401331, China
| | - Jun Li
- School of Chemistry and Chemical Engineering and Chongqing Key Laboratory of Theoretical and Computational Chemistry, Chongqing University, Chongqing 401331, China
| | - Mingfei Zhou
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai 200433, China
| | - Xiaoqing Zeng
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai 200433, China
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2
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Fang W, Zhu YC, Cheng Y, Hao YP, Richardson JO. Robust Gaussian Process Regression Method for Efficient Tunneling Pathway Optimization: Application to Surface Processes. J Chem Theory Comput 2024; 20:3766-3778. [PMID: 38708859 PMCID: PMC11099967 DOI: 10.1021/acs.jctc.4c00158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 04/17/2024] [Accepted: 04/17/2024] [Indexed: 05/07/2024]
Abstract
Simulation of surface processes is a key part of computational chemistry that offers atomic-scale insights into mechanisms of heterogeneous catalysis, diffusion dynamics, and quantum tunneling phenomena. The most common theoretical approaches involve optimization of reaction pathways, including semiclassical tunneling pathways (called instantons). The computational effort can be demanding, especially for instanton optimizations with an ab initio electronic structure. Recently, machine learning has been applied to accelerate reaction-pathway optimization, showing great potential for a wide range of applications. However, previous methods still suffer from numerical and efficiency issues and were not designed for condensed-phase reactions. We propose an improved framework based on Gaussian process regression for general transformed coordinates, which has improved efficiency and numerical stability, and we propose a descriptor that combines internal and Cartesian coordinates suitable for modeling surface processes. We demonstrate with 11 instanton optimizations in three representative systems that the improved approach makes ab initio instanton optimization significantly cheaper, such that it becomes not much more expensive than a classical transition-state theory rate calculation.
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Affiliation(s)
- Wei Fang
- Department
of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative
Materials, Fudan University, Shanghai 200438, P. R. China
- Laboratory
of Physical Chemistry, ETH Zürich, Zürich 8093, Switzerland
- State
Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical
Computational Chemistry, Dalian Institute
of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, P. R. China
| | - Yu-Cheng Zhu
- State
Key Laboratory for Artificial Microstructure and Mesoscopic Physics,
Frontier Science Center for Nano-optoelectronics and School of Physics, Peking University, Beijing 100871, China
| | - Yihan Cheng
- State
Key Laboratory for Artificial Microstructure and Mesoscopic Physics,
Frontier Science Center for Nano-optoelectronics and School of Physics, Peking University, Beijing 100871, China
| | - Yi-Ping Hao
- State
Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical
Computational Chemistry, Dalian Institute
of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, P. R. China
| | - Jeremy O. Richardson
- Department
of Chemistry and Applied Biosciences, ETH
Zürich, Zürich 8093, Switzerland
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3
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Panajapo P, Suwannakham P, Promma P, Sagarik K. Mechanisms of glycine formation in cold interstellar media: a theoretical study. ROYAL SOCIETY OPEN SCIENCE 2024; 11:231957. [PMID: 39076804 PMCID: PMC11285375 DOI: 10.1098/rsos.231957] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/18/2023] [Revised: 02/20/2024] [Accepted: 03/12/2024] [Indexed: 07/31/2024]
Abstract
The possibility of the formation of glycine (Gly) from fundamental gas molecules in cold interstellar media was studied using quantum chemical methods, transition state theory and microcanonical molecular dynamics simulations with surface hopping dynamics (NVE-MDSH). This theoretical study emphasized five photochemical pathways in the lowest singlet-excited (S 1) state, thermochemical processes after non-radiative S 1→S 0 relaxations, and photo-to-thermal energy conversion in the NVE ensemble. The optimized reaction pathways suggested that to generate a reactive singlet dihydroxy carbene (HOCOH) intermediate, photochemical pathways involving the H2O…CO van der Waals and H2O-OC hydrogen bond precursors (Ch (1)_Step (1)) possess considerably lower energy barriers than the S 0 state pathways. The Gibbs free energy barriers (∆G ǂ ) calculated after the non-radiative S 1 →S 0 relaxations indicated higher spontaneous temperatures (T s) for the formation of the HOCOH intermediate (Ch (1)_Step (1)) than for Gly formation (Ch (1)_Step (2) and Ch (4)). Although the termolecular reaction in Ch (4) possesses a low energy barrier, and is thermodynamically favourable, the high exothermic S 1 →S 0 relaxation energy leads to the separation of the weakly associated H2O…CH2NH…CO complex into single molecules. The NVE-MDSH results also confirmed that the molecular processes after the S 1 →S 0 relaxations are thermally selective, and because the non-radiative S 1 →S 0 relaxation temperatures are exceedingly higher than T s, the formation of Gly on consecutive reaction pathways is non-synergistic with low yields and several side products. Based on the theoretical results, photo-to-thermal control strategies to promote desirable photochemical products are proposed. They could be used as guidelines for future theoretical and experimental research on photochemical reactions.
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Affiliation(s)
- Pannipa Panajapo
- School of Chemistry, Institute of Science, Suranaree University of Technology, Nakhon Ratchasima30000, Thailand
| | - Parichart Suwannakham
- School of Chemistry, Institute of Science, Suranaree University of Technology, Nakhon Ratchasima30000, Thailand
| | - Phorntep Promma
- School of Chemistry, Institute of Science, Suranaree University of Technology, Nakhon Ratchasima30000, Thailand
| | - Kritsana Sagarik
- School of Chemistry, Institute of Science, Suranaree University of Technology, Nakhon Ratchasima30000, Thailand
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4
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Cammi R, Chen B. Activation volume and quantum tunneling in the hydrogen transfer reaction between methyl radical and methane: A first computational study. J Chem Phys 2024; 160:104103. [PMID: 38465680 DOI: 10.1063/5.0195973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Accepted: 02/20/2024] [Indexed: 03/12/2024] Open
Abstract
We present a theory of the effect of quantum tunneling on the basic parameter that characterizes the effect of pressure on the rate constant of chemical reactions in a dense phase, the activation volume. This theory results in combining, on the one hand, the extreme pressure polarizable continuum model, a quantum chemical method to describe the effect of pressure on the reaction energy profile in a dense medium, and, on the other hand, the semiclassical version of the transition state theory, which includes the effect of quantum tunneling through a transmission coefficient. The theory has been applied to the study of the activation volume of the model reaction of hydrogen transfer between methyl radical and methane, including the primary isotope substitution of hydrogen with deuterium (H/D). The analysis of the numerical results offers, for the first time, a clear insight into the effect of quantum tunneling on the activation volume for this hydrogen transfer reaction: this effect results from the different influences that pressure has on the competing thermal and tunneling reaction mechanisms. Furthermore, the computed kinetic isotope effect (H/D) on the activation volume for this model hydrogen transfer correlates well with the experimental data for more complex hydrogen transfer reactions.
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Affiliation(s)
- Roberto Cammi
- Department of Chemistry, Life Sciences and Environmental Sustainability, Università degli Studi di Parma, Parco Area delle Scienze 11/a, 43124 Parma, Italy
| | - Bo Chen
- Donostia International Physics Center, Paseo Manuel de Lardizabal 4, 20018 Donostia-San Sebastian, Spain
- IKERBASQUE, Basque Foundation for Science, Plaza Euskadi 5, 48009 Bilbao, Spain
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5
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Martínez-Bachs B, Rimola A. Gas-Phase vs. Grain-Surface Formation of Interstellar Complex Organic Molecules: A Comprehensive Quantum-Chemical Study. Int J Mol Sci 2023; 24:16824. [PMID: 38069147 PMCID: PMC10706303 DOI: 10.3390/ijms242316824] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Revised: 11/20/2023] [Accepted: 11/24/2023] [Indexed: 12/18/2023] Open
Abstract
Several organic chemical compounds (the so-called interstellar complex organic molecules, iCOMs) have been identified in the interstellar medium (ISM). Examples of iCOMs are formamide (HCONH2), acetaldehyde (CH3CHO), methyl formate (CH3OCHO), or formic acid (HCOOH). iCOMs can serve as precursors of other organic molecules of enhanced complexity, and hence they are key species in chemical evolution in the ISM. The formation of iCOMs is still a subject of a vivid debate, in which gas-phase or grain-surface syntheses have been postulated. In this study, we investigate the grain-surface-formation pathways for the four above-mentioned iCOMs by transferring their primary gas-phase synthetic routes onto water ice surfaces. Our objective is twofold: (i) to identify potential grain-surface-reaction mechanisms leading to the formation of these iCOMs, and (ii) to decipher either parallelisms or disparities between the gas-phase and the grain-surface reactions. Results obtained indicate that the presence of the icy surface modifies the energetic features of the reactions compared to the gas-phase scenario, by increasing some of the energy barriers. Therefore, the investigated gas-phase mechanisms seem unlikely to occur on the icy grains, highlighting the distinctiveness between the gas-phase and the grain-surface chemistry.
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Affiliation(s)
| | - Albert Rimola
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Catalonia, Spain;
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6
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Brezina K, Beck H, Marsalek O. Reducing the Cost of Neural Network Potential Generation for Reactive Molecular Systems. J Chem Theory Comput 2023; 19:6589-6604. [PMID: 37747971 PMCID: PMC10569056 DOI: 10.1021/acs.jctc.3c00391] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Indexed: 09/27/2023]
Abstract
Although machine learning potentials have recently had a substantial impact on molecular simulations, the construction of a robust training set can still become a limiting factor, especially due to the requirement of a reference ab initio simulation that covers all the relevant geometries of the system. Recognizing that this can be prohibitive for certain systems, we develop the method of transition tube sampling that mitigates the computational cost of training set and model generation. In this approach, we generate classical or quantum thermal geometries around a transition path describing a conformational change or a chemical reaction using only a sparse set of local normal mode expansions along this path and select from these geometries by an active learning protocol. This yields a training set with geometries that characterize the whole transition without the need for a costly reference trajectory. The performance of the method is evaluated on different molecular systems with the complexity of the potential energy landscape increasing from a single minimum to a double proton-transfer reaction with high barriers. Our results show that the method leads to training sets that give rise to models applicable in classical and path integral simulations alike that are on par with those based directly on ab initio calculations while providing the computational speedup we have come to expect from machine learning potentials.
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Affiliation(s)
- Krystof Brezina
- Charles University, Faculty of Mathematics
and Physics, Ke Karlovu
3, 121 16, Prague
2, Czech Republic
| | - Hubert Beck
- Charles University, Faculty of Mathematics
and Physics, Ke Karlovu
3, 121 16, Prague
2, Czech Republic
| | - Ondrej Marsalek
- Charles University, Faculty of Mathematics
and Physics, Ke Karlovu
3, 121 16, Prague
2, Czech Republic
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7
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Paul M, Thomulka T, Harnying W, Neudörfl JM, Adams CR, Martens J, Berden G, Oomens J, Meijer AJHM, Berkessel A, Schäfer M. Hydrogen Bonding Shuts Down Tunneling in Hydroxycarbenes: A Gas-Phase Study by Tandem-Mass Spectrometry, Infrared Ion Spectroscopy, and Theory. J Am Chem Soc 2023. [PMID: 37235775 DOI: 10.1021/jacs.3c01698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Hydroxycarbenes can be generated and structurally characterized in the gas phase by collision-induced decarboxylation of α-keto carboxylic acids, followed by infrared ion spectroscopy. Using this approach, we have shown earlier that quantum-mechanical hydrogen tunneling (QMHT) accounts for the isomerization of a charge-tagged phenylhydroxycarbene to the corresponding aldehyde in the gas phase and above room temperature. Herein, we report the results of our current study on aliphatic trialkylammonio-tagged systems. Quite unexpectedly, the flexible 3-(trimethylammonio)propylhydroxycarbene turned out to be stable─no H-shift to either aldehyde or enol occurred. As supported by density functional theory calculations, this novel QMHT inhibition is due to intramolecular H-bonding of a mildly acidic α-ammonio C-H bonds to the hydroxyl carbene's C-atom (C:···H-C). To further support this hypothesis, (4-quinuclidinyl)hydroxycarbenes were synthesized, whose rigid structure prevents this intramolecular H-bonding. The latter hydroxycarbenes underwent "regular" QMHT to the aldehyde at rates comparable to, e.g., methylhydroxycarbene studied by Schreiner et al. While QMHT has been shown for a number of biological H-shift processes, its inhibition by H-bonding disclosed here may serve for the stabilization of highly reactive intermediates such as carbenes, even as a mechanism for biasing intrinsic selectivity patterns.
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Affiliation(s)
- Mathias Paul
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
| | - Thomas Thomulka
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
| | - Wacharee Harnying
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
| | - Jörg-Martin Neudörfl
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
| | - Charlie R Adams
- Department of Chemistry, University of Sheffield, Sheffield S3 7HF, U.K
| | - Jonathan Martens
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, Nijmegen 6525 ED, The Netherlands
| | - Giel Berden
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, Nijmegen 6525 ED, The Netherlands
| | - Jos Oomens
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, Nijmegen 6525 ED, The Netherlands
- Van't Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, Amsterdam 1098 XH, The Netherlands
| | | | - Albrecht Berkessel
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
| | - Mathias Schäfer
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
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8
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Chen BW. Equilibrium and kinetic isotope effects in heterogeneous catalysis: A density functional theory perspective. CATAL COMMUN 2023. [DOI: 10.1016/j.catcom.2023.106654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023] Open
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9
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Umesaki K, Odai K. Tunneling Effect in Proton Transfer: Transfer Matrix Approach. J Phys Chem A 2023; 127:1046-1052. [PMID: 36689270 DOI: 10.1021/acs.jpca.2c05880] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
The transfer matrix (TM) method was applied to calculate the transmission probability (TP) for proton transfer reactions. The tunneling factors in the reaction rate constants were also evaluated using the TPs. To test this method, TPs for the Eckart potentials modeled as a guanine-cytosine base pair were calculated by the TM method and compared to TPs by the analytical solution. As a result, the errors in the TPs by the TM method were quite small. The tunneling factors for the guanine-thymine (G-T) and adenine-cytosine (A-C) mispair reactions were then evaluated by the TM method. A shoulder appears on each potential for these reactions [Odai, K.; Umesaki,K. J. Phys. Chem. A. 2021, 125, 8196-8204]. As a result, the shoulder for the G-T mispair reaction contributes significantly to the tunneling, while the shoulder for the A-C mispair reaction contributes little to the tunneling. These results are difficult to obtain with methods such as Wigner's tunneling factor.
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Affiliation(s)
- Keisho Umesaki
- School of Science and Engineering, Kokushikan University, Setagaya-ku, Tokyo154-8515, Japan
| | - Kei Odai
- School of Science and Engineering, Kokushikan University, Setagaya-ku, Tokyo154-8515, Japan
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10
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Welz O, Pfeifle M, Plehiers PM, Sure R, Deglmann P. Reaction of OH with Aliphatic and Aromatic Isocyanates. J Phys Chem A 2022; 126:9333-9352. [DOI: 10.1021/acs.jpca.2c06011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Oliver Welz
- BASF SE, Scientific Modelling − Quantum Chemistry, Group Research, Carl-Bosch-Straße 38, Ludwigshafen am Rhein67056, Germany
| | - Mark Pfeifle
- BASF SE, Scientific Modelling − Quantum Chemistry, Group Research, Carl-Bosch-Straße 38, Ludwigshafen am Rhein67056, Germany
| | - Patrick M. Plehiers
- International Isocyanate Institute Inc. (III), 333 Route 46 West, Suite. 206, Mountain Lakes, New Jersey07046, United States
| | - Rebecca Sure
- BASF SE, Scientific Modelling − Quantum Chemistry, Group Research, Carl-Bosch-Straße 38, Ludwigshafen am Rhein67056, Germany
| | - Peter Deglmann
- BASF SE, Scientific Modelling − Quantum Chemistry, Group Research, Carl-Bosch-Straße 38, Ludwigshafen am Rhein67056, Germany
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11
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Amić A, Cagardová DM. Mactanamide and lariciresinol as radical scavengers and Fe 2+ ion chelators - A DFT study. PHYTOCHEMISTRY 2022; 204:113442. [PMID: 36150528 DOI: 10.1016/j.phytochem.2022.113442] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Revised: 09/13/2022] [Accepted: 09/14/2022] [Indexed: 06/16/2023]
Abstract
A DFT based kinetic study of OOH radical scavenging potency of mactanamide (MA) and lariciresinol (LA), two natural polyphenols, indicates their nearly equal potential via the proton coupled electron transfer (PCET) mechanism in lipid media. Contribution of C-H bond breaking to this potency is negligible compared to O-H bond breaking, contrary to recent claims. The predicted potency of both compounds is not sufficient to protect biological molecules from oxidative damage in lipid media. In aqueous media, the scavenging potency of MA and LA phenoxide anions via the single electron transfer (SET) mechanism is much higher and may contribute to the protection of lipids, proteins, and DNA from OOH radical damage. Also, MA and LA have the potential to chelate catalytic Fe2+ ions, thus suppressing the formation of dangerous OH radicals via Fenton-type reactions. The monoanionic species of MA and LA show stronger monodentate chelating ability with Fe2+ ion compared to its neutral form. The dianionic specie LA2- exhibited the highest chelation ability with Fe2+ ion via bidentate 1:2 coordination. However, direct radical scavenging and metal chelation could be rarely operative in vivo because MA and LA presumably achieve very low concentrations in systemic circulation.
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Affiliation(s)
- Ana Amić
- Department of Chemistry, Josip Juraj Strossmayer University of Osijek, Ulica Cara Hadrijana 8A, Osijek, 31000, Croatia.
| | - Denisa Mastiľák Cagardová
- Institute of Physical Chemistry and Chemical Physics, Department of Chemical Physics, Slovak University of Technology in Bratislava, Radlinského 9, Bratislava, SK-812 37, Slovak Republic
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12
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Lopes Jesus AJ, de Lucena Júnior JR, Fausto R, Reva I. Infrared Spectra and Phototransformations of meta-Fluorophenol Isolated in Argon and Nitrogen Matrices. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27238248. [PMID: 36500356 PMCID: PMC9735537 DOI: 10.3390/molecules27238248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/22/2022] [Revised: 11/18/2022] [Accepted: 11/21/2022] [Indexed: 11/29/2022]
Abstract
Monomers of meta-fluorophenol (mFP) were trapped from the gas phase into cryogenic argon and nitrogen matrices. The estimated relative energies of the two conformers are very close, and in the gas phase they have nearly equal populations. Due to the similarity of their structures (they only differ in the orientation of the OH group), the two conformers have also similar predicted vibrational signatures, which makes the vibrational characterization of the individual rotamers challenging. In the present work, it has been established that in an argon matrix only the most stable trans conformer of mFP exists (the OH group pointing away from the fluorine atom). On the other hand, the IR spectrum of mFP in a nitrogen matrix testifies to the simultaneous presence in this matrix of both the trans conformer and of the higher-energy cis conformer (the OH group pointing toward the fluorine atom), which is stabilized by interaction with the matrix gas host. We found that the exposition of the cryogenic N2 matrix to the Globar source of the infrared spectrometer affects the conformational populations. By collecting experimental spectra, either in the full mid-infrared range or only in the range below 2200 cm-1, we were able to reliably distinguish two sets of experimental bands originating from individual conformers. A comparison of the two sets of experimental bands with computed infrared spectra of the conformers allowed, for the first time, the unequivocal vibrational identification of each of them. The joint implementation of computational vibrational spectroscopy and matrix-isolation infrared spectroscopy proved to be a very accurate method of structural analysis. Some mechanistic insights into conformational isomerism (the quantum tunneling of hydrogen atom and vibrationally-induced conformational transformations) have been addressed. Finally, we also subjected matrix-isolated mFP to irradiations with UV light, and the phototransformations observed in these experiments are also described.
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Affiliation(s)
- A. J. Lopes Jesus
- CQC-IMS, Faculty of Pharmacy, University of Coimbra, 3004-295 Coimbra, Portugal
- Correspondence: (A.J.L.J.); (I.R.)
| | | | - Rui Fausto
- CQC-IMS, Department of Chemistry, University of Coimbra, 3004-535 Coimbra, Portugal
| | - Igor Reva
- CQC-IMS, Department of Chemistry, University of Coimbra, 3004-535 Coimbra, Portugal
- CIEPQPF, Department of Chemical Engineering, University of Coimbra, 3030-790 Coimbra, Portugal
- Correspondence: (A.J.L.J.); (I.R.)
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13
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Karnbrock SBH, Golz C, Mata RA, Alcarazo M. Ligand‐Enabled Disproportionation of 1,2‐Diphenylhydrazine at a P
V
‐Center**. Angew Chem Int Ed Engl 2022; 61:e202207450. [PMID: 35714171 PMCID: PMC9542402 DOI: 10.1002/anie.202207450] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Indexed: 12/02/2022]
Abstract
We present herein the synthesis of a nearly square‐pyramidal chlorophosphorane supported by the tetradentate bis(amidophenolate) ligand, N,N′‐bis(3,5‐di‐tert‐butyl‐2‐phenoxy)‐1,2‐phenylenediamide. After chloride abstraction the resulting phosphonium cation efficiently promotes the disproportionation of 1,2‐diphenylhydrazine to aniline and azobenzene. Mechanistic studies, spectroscopic analyses and theoretical calculations suggest that this unprecedented reactivity mode for PV‐centres is induced by the high electrophilicity at the cationic PV‐center, which originates from the geometry constraints imposed by the rigid pincer ligand, combined with the ability of the o‐amidophenolate moieties to act as electron reservoir. This study illustrates the promising role of cooperativity between redox‐active ligands and phosphorus for the design of organocatalysts able to promote redox processes.
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Affiliation(s)
- Simon B. H. Karnbrock
- Institut für Organische und Biomolekulare Chemie Georg-August-Universität Göttingen Tammannstr. 2 37077 Göttingen Germany
| | - Christopher Golz
- Institut für Organische und Biomolekulare Chemie Georg-August-Universität Göttingen Tammannstr. 2 37077 Göttingen Germany
| | - Ricardo A. Mata
- Institut für Physikalische Chemie Georg-August-Universität Göttingen Tammannstr. 6 37077 Göttingen Germany
| | - Manuel Alcarazo
- Institut für Organische und Biomolekulare Chemie Georg-August-Universität Göttingen Tammannstr. 2 37077 Göttingen Germany
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14
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Alcarazo M, Karnbrock SBH, Golz C, Mata RA. Ligand Enabled Disproportionation of 1,2‐Diphenylhydrazine at a P(V)‐Center. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202207450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Manuel Alcarazo
- Georg-August-Universität Göttingen Organic chemistry Tammannstr 2 37007 Göttingen GERMANY
| | - Simon B. H. Karnbrock
- Georg-August-Universität Göttingen: Georg-August-Universitat Gottingen Institut für organische und Biomolekulare Chemie GERMANY
| | - Christopher Golz
- Georg-August-Universität Göttingen: Georg-August-Universitat Gottingen Institu für Organische und Biomolekulare Chemie GERMANY
| | - Ricardo A. Mata
- Georg-August-Universität Göttingen: Georg-August-Universitat Gottingen Institut für Physikalische Chemie GERMANY
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15
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Ansari IM, Heller ER, Trenins G, Richardson JO. Instanton theory for Fermi's golden rule and beyond. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2022; 380:20200378. [PMID: 35341312 PMCID: PMC8958279 DOI: 10.1098/rsta.2020.0378] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Accepted: 09/22/2021] [Indexed: 05/29/2023]
Abstract
Instanton theory provides a semiclassical approximation for computing quantum tunnelling effects in complex molecular systems. It is typically applied to proton-transfer reactions for which the Born-Oppenheimer approximation is valid. However, many processes in physics, chemistry and biology, such as electron transfers, are non-adiabatic and are correctly described instead using Fermi's golden rule. In this work, we discuss how instanton theory can be generalized to treat these reactions in the golden-rule limit. We then extend the theory to treat fourth-order processes such as bridge-mediated electron transfer and apply the method to simulate an electron moving through a model system of three coupled quantum dots. By comparison with benchmark quantum calculations, we demonstrate that the instanton results are much more reliable than alternative approximations based on superexchange-mediated effective coupling or a classical sequential mechanism. This article is part of the theme issue 'Chemistry without the Born-Oppenheimer approximation'.
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Affiliation(s)
| | - Eric R. Heller
- Laboratory of Physical Chemistry, ETH, Zürich, Switzerland
| | - George Trenins
- Laboratory of Physical Chemistry, ETH, Zürich, Switzerland
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16
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Han E, Fang W, Stamatakis M, Richardson JO, Chen J. Quantum Tunnelling Driven H 2 Formation on Graphene. J Phys Chem Lett 2022; 13:3173-3181. [PMID: 35362977 DOI: 10.1021/acs.jpclett.2c00520] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
It is commonly believed that it is unfavorable for adsorbed H atoms on carbonaceous surfaces to form H2 without the help of incident H atoms. Using ring-polymer instanton theory to describe multidimensional tunnelling effects, combined with ab initio electronic structure calculations, we find that these quantum-mechanical simulations reveal a qualitatively different picture. Recombination of adsorbed H atoms, which was believed to be irrelevant at low temperature due to high barriers, is enabled by deep tunnelling, with reaction rates enhanced by tens of orders of magnitude. Furthermore, we identify a new path for H recombination that proceeds via multidimensional tunnelling but would have been predicted to be unfeasible by a simple one-dimensional description of the reaction. The results suggest that hydrogen molecule formation at low temperatures are rather fast processes that should not be ignored in experimental settings and natural environments with graphene, graphite, and other planar carbon segments.
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Affiliation(s)
- Erxun Han
- School of Physics, Peking University, Beijing 100871, China
- Interdisciplinary Institute of Light-Element Quantum Materials and Research Center for Light-Element Advanced Materials, Peking University, Beijing 100871, People's Republic of China
| | - Wei Fang
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, P. R. China
- Department of Chemistry, Fudan University, Shanghai 200438, China
- Laboratory of Physical Chemistry, ETH Zurich, CH-8093 Zurich, Switzerland
| | - Michail Stamatakis
- Thomas Young Centre and Department of Chemical Engineering, University College London, Torrington Place, London WC1E 7JE, United Kingdom
| | | | - Ji Chen
- School of Physics, Peking University, Beijing 100871, China
- Interdisciplinary Institute of Light-Element Quantum Materials and Research Center for Light-Element Advanced Materials, Peking University, Beijing 100871, People's Republic of China
- Frontiers Science Center for Nano-Optoelectronics, Peking University, Beijing 100871, People's Republic of China
- Collaborative Innovation Center of Quantum Matter, Beijing 100871, People's Republic of China
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17
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Cheng YH, Zhu YC, Kang W, Li X, Fang W. Determination of concerted or stepwise mechanism of hydrogen tunneling from isotope effects: Departure between experiment and theory. J Chem Phys 2022; 156:124304. [DOI: 10.1063/5.0085010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Isotope substitution is an important experimental technique that offers deep insight into reaction mechanisms, as the measured kinetic isotope effects (KIEs) can be directly compared with theory. For multiple proton transfer processes, there are two types of mechanisms: stepwise transfer and concerted transfer. The Bell-Limbach model provides a simple theory to determine whether the proton transfer mechanism is stepwise or concerted from KIEs. Recent STM experiments have studied the proton switching process in water tetramers on NaCl(001). Theoretical studies predict that this process occurs via a concerted mechanism, however, the experimental KIEs resemble the Bell-Limbach model for stepwise tunneling, raising question on the underlying mechanism or the validity of the model. We study this system using ab initio instanton theory, and in addition to thermal rates, we also considered microcanonical rates, as well as tunneling splittings. Instanton theory predicts a concerted mechanism, and the KIEs for tunneling rates (both thermal and microcanonical) upon deuteration are consistent with the Bell-Limbach model for concerted tunneling, but could not explain the experiments. For tunneling splittings, partial and full deuteration changes the size of it in a similar fashion to how it changes the rates. We further examined the Bell-Limbach model in another system, porphycene, which has both stepwise and concerted tunneling pathways. The KIEs predicted by instanton theory are again consistent with the Bell-Limbach model. This study highlights differences between KIEs in stepwise and concerted tunneling, and the discrepancy between theory and recent STM experiments. New theory/experiments are desired to settle this problem.
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Affiliation(s)
| | | | - Wei Kang
- Center for Applied Physics and Technology, Peking University, China
| | | | - Wei Fang
- Dalian Institute of Chemical Physics, China
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18
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19
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Jaglan R, Mandal D. The role of potential energy surface in quantum mechanical tunneling: A computational perspective. COMPUT THEOR CHEM 2020. [DOI: 10.1016/j.comptc.2020.112920] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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20
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Roy L. Theoretical Identification of the Factors Governing the Reactivity of C-H Bond Activation by Non-Heme Iron(IV)-Oxo Complexes. Chempluschem 2020; 84:893-906. [PMID: 31943994 DOI: 10.1002/cplu.201900178] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2019] [Revised: 05/30/2019] [Indexed: 11/06/2022]
Abstract
Selective functionalization of C-H bonds provides a straightforward approach to a large variety of well-defined derivatives. High-valent mononuclear iron(IV)-oxo complexes are proposed to carry out these C-H activation reactions in enzymes or in biomimetic syntheses. In this Minireview, we aim to highlight the features that delineate the distinct reactivity of non-heme oxo-iron(IV) motifs to cleave strong C-H bonds in hydrocarbons, primarily focusing on the hydrogen atom transfer (HAT) process. We describe how the structural and electronic properties of supporting ligands modulate the oxidative property of the iron(IV)-oxo complexes. Furthermore, we highlight the decisive role played by spin-state in these biomimetic reactions. We also discuss how tunneling and external perturbations like electric field influence the transfer of hydrogen atoms. Lastly, we emphasize how computations could work as a practical guide to sketch and develop synthetic models with greater efficacy.
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Affiliation(s)
- Lisa Roy
- Institute of Chemical Technology Mumbai IOC Odisha Campus Bhubaneswar, IIT Kharagpur Extension Centre, Bhubaneswar, 751013, Odisha, India
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21
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Castro C, Karney WL. Heavy‐Atom Tunneling in Organic Reactions. Angew Chem Int Ed Engl 2020; 59:8355-8366. [DOI: 10.1002/anie.201914943] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Revised: 01/03/2020] [Indexed: 11/10/2022]
Affiliation(s)
- Claire Castro
- Department of Chemistry University of San Francisco 2130 Fulton St. San Francisco CA 94117 USA
| | - William L. Karney
- Department of Chemistry University of San Francisco 2130 Fulton St. San Francisco CA 94117 USA
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22
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Affiliation(s)
- Claire Castro
- Department of Chemistry University of San Francisco 2130 Fulton St. San Francisco CA 94117 USA
| | - William L. Karney
- Department of Chemistry University of San Francisco 2130 Fulton St. San Francisco CA 94117 USA
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23
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Tunnelling in cyclocarbenes: An application of Semiclassical Transition State Theory in reduced dimensions. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2019.136783] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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24
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Cooper AM, Kästner J. Low-Temperature Kinetic Isotope Effects in CH3OH + H → CH2OH + H2 Shed Light on the Deuteration of Methanol in Space. J Phys Chem A 2019; 123:9061-9068. [DOI: 10.1021/acs.jpca.9b07013] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- April M. Cooper
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
| | - Johannes Kästner
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
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25
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Császár AG, Fábri C, Sarka J. Quasistructural molecules. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2019. [DOI: 10.1002/wcms.1432] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Attila G. Császár
- Laboratory of Molecular Structure and Dynamics, Institute of Chemistry ELTE Eötvös Loránd University Budapest Hungary
- MTA‐ELTE Complex Chemical Systems Research Group Budapest Hungary
| | - Csaba Fábri
- Laboratory of Molecular Structure and Dynamics, Institute of Chemistry ELTE Eötvös Loránd University Budapest Hungary
- MTA‐ELTE Complex Chemical Systems Research Group Budapest Hungary
| | - János Sarka
- Department of Chemistry and Biochemistry Texas Tech University Lubbock Texas USA
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26
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Winter P, Richardson JO. Divide-and-Conquer Method for Instanton Rate Theory. J Chem Theory Comput 2019; 15:2816-2825. [DOI: 10.1021/acs.jctc.8b01267] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Pierre Winter
- Laboratory of Physical Chemistry, ETH Zürich, 8093 Zürich, Switzerland
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27
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Thapa MJ, Fang W, Richardson JO. Nonadiabatic quantum transition-state theory in the golden-rule limit. I. Theory and application to model systems. J Chem Phys 2019; 150:104107. [DOI: 10.1063/1.5081108] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Manish J. Thapa
- Laboratory of Physical Chemistry, ETH Zürich, 8093 Zürich, Switzerland
| | - Wei Fang
- Laboratory of Physical Chemistry, ETH Zürich, 8093 Zürich, Switzerland
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28
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Affiliation(s)
- Wei Fang
- School of Physics and Collaborative Innovation Centre of Quantum Matter, Peking University, Beijing, People's Republic of China
- Thomas Young Centre, London Centre for Nanotechnology, and Department of Physics and Astronomy, University College London, London, UK
- Laboratory of Physical Chemistry, ETH Zurich, Zurich, Switzerland
| | - Ji Chen
- Department of Electronic Structure Theory, Max Plank Institute for Solid State Research, Stuttgart, Germany
| | - Yexin Feng
- School of Physics and Electronics, Hunan University, Changsha, People's Republic of China
| | - Xin-Zheng Li
- School of Physics and Collaborative Innovation Centre of Quantum Matter, Peking University, Beijing, People's Republic of China
- State Key Laboratory for Artificial Microstructure and Mesoscopic Physics, Peking University, Beijing, People's Republic of China
| | - Angelos Michaelides
- Thomas Young Centre, London Centre for Nanotechnology, and Department of Physics and Astronomy, University College London, London, UK
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29
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McConnell SR, Kästner J. Instanton rate constant calculations using interpolated potential energy surfaces in nonredundant, rotationally and translationally invariant coordinates. J Comput Chem 2019; 40:866-874. [PMID: 30677168 DOI: 10.1002/jcc.25770] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2018] [Revised: 11/25/2018] [Accepted: 11/27/2018] [Indexed: 11/07/2022]
Abstract
A trivial flaw in the utilization of artificial neural networks in interpolating chemical potential energy surfaces (PES) whose descriptors are Cartesian coordinates is their dependence on simple translations and rotations of the molecule under consideration. A different set of descriptors can be chosen to circumvent this problem, internuclear distances, inverse internuclear distances or z-matrix coordinates are three such descriptors. The objective is to use an interpolated PES in instanton rate constant calculations, hence information on the energy, gradient, and Hessian is required at coordinates in the vicinity of the tunneling path. Instanton theory relies on smoothly fitted Hessians, therefore we use energy, gradients, and Hessians in the training procedure. A major challenge is presented in the proper back-transformation of the output gradients and Hessians from internal coordinates to Cartesian coordinates. We perform comparisons between our method, a previous approach and on-the-fly rate constant calcuations on the hydrogen abstraction from methanol and on the hydrogen addition to isocyanic acid. © 2018Wiley Periodicals, Inc.
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Affiliation(s)
- Sean R McConnell
- Institute for Theoretical Chemistry, University of Stuttgart, 70569, Stuttgart, Germany
| | - Johannes Kästner
- Institute for Theoretical Chemistry, University of Stuttgart, 70569, Stuttgart, Germany
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30
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Löhle A, Kästner J. Calculation of Reaction Rate Constants in the Canonical and Microcanonical Ensemble. J Chem Theory Comput 2018; 14:5489-5498. [DOI: 10.1021/acs.jctc.8b00565] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Andreas Löhle
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart,Germany
| | - Johannes Kästner
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart,Germany
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31
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Quanz H, Schreiner PR. TUNNEX: An easy‐to‐use wentzel‐kramers‐brillouin (WKB) implementation to compute tunneling half‐lives. J Comput Chem 2018; 40:543-547. [DOI: 10.1002/jcc.25711] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2018] [Revised: 08/31/2018] [Accepted: 09/21/2018] [Indexed: 11/06/2022]
Affiliation(s)
- Henrik Quanz
- Institute of Organic Chemistry, Justus Liebig University Giessen Heinrich‐Buff‐Ring 17 Giessen 35392 Germany
| | - Peter R. Schreiner
- Institute of Organic Chemistry, Justus Liebig University Giessen Heinrich‐Buff‐Ring 17 Giessen 35392 Germany
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32
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Welsch R. Low‐Temperature Thermal Rate Constants for the Water Formation Reaction H
2
+OH from Rigorous Quantum Dynamics Calculations. Angew Chem Int Ed Engl 2018; 57:13150-13153. [DOI: 10.1002/anie.201807666] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2018] [Indexed: 11/06/2022]
Affiliation(s)
- Ralph Welsch
- Center for Free-Electron Laser Science, DESY Notkestraße 85 22607 Hamburg Germany
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33
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Welsch R. Low‐Temperature Thermal Rate Constants for the Water Formation Reaction H
2
+OH from Rigorous Quantum Dynamics Calculations. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201807666] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Ralph Welsch
- Center for Free-Electron Laser Science, DESY Notkestraße 85 22607 Hamburg Germany
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34
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35
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Welsch R. Rigorous close-coupling quantum dynamics calculation of thermal rate constants for the water formation reaction of H2 + OH on a high-level PES. J Chem Phys 2018; 148:204304. [DOI: 10.1063/1.5033358] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Ralph Welsch
- Center for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany
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36
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Mattiat J, Richardson JO. Effects of tunnelling and asymmetry for system-bath models of electron transfer. J Chem Phys 2018; 148:102311. [PMID: 29544261 DOI: 10.1063/1.5001116] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We apply the newly derived nonadiabatic golden-rule instanton theory to asymmetric models describing electron-transfer in solution. The models go beyond the usual spin-boson description and have anharmonic free-energy surfaces with different values for the reactant and product reorganization energies. The instanton method gives an excellent description of the behaviour of the rate constant with respect to asymmetry for the whole range studied. We derive a general formula for an asymmetric version of the Marcus theory based on the classical limit of the instanton and find that this gives significant corrections to the standard Marcus theory. A scheme is given to compute this rate based only on equilibrium simulations. We also compare the rate constants obtained by the instanton method with its classical limit to study the effect of tunnelling and other quantum nuclear effects. These quantum effects can increase the rate constant by orders of magnitude.
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Affiliation(s)
- Johann Mattiat
- Laboratory of Physical Chemistry, ETH Zurich, 8093 Zurich, Switzerland
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37
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Affiliation(s)
- Jan Meisner
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
| | - Johannes Kästner
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
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38
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Cooper AM, Hallmen PP, Kästner J. Potential energy surface interpolation with neural networks for instanton rate calculations. J Chem Phys 2018. [DOI: 10.1063/1.5015950] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- April M. Cooper
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
| | - Philipp P. Hallmen
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
| | - Johannes Kästner
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
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39
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Mandal D, Mallick D, Shaik S. Kinetic Isotope Effect Determination Probes the Spin of the Transition State, Its Stereochemistry, and Its Ligand Sphere in Hydrogen Abstraction Reactions of Oxoiron(IV) Complexes. Acc Chem Res 2018; 51:107-117. [PMID: 29297671 DOI: 10.1021/acs.accounts.7b00442] [Citation(s) in RCA: 65] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
This Account outlines interplay of theory and experiment in the quest to identify the reactive-spin-state in chemical reactions that possess a few spin-dependent routes. Metalloenzymes and synthetic models have forged in recent decades an area of increasing appeal, in which oxometal species bring about functionalization of hydrocarbons under mild conditions and via intriguing mechanisms that provide a glimpse of Nature's designs to harness these reactions. Prominent among these are oxoiron(IV) complexes, which are potent H-abstractors. One of the key properties of oxoirons is the presence of close-lying spin-states, which can mediate H-abstractions. As such, these complexes form a fascinating chapter of spin-state chemistry, in which chemical reactivity involves spin-state interchange, so-called two-state reactivity (TSR) and multistate reactivity (MSR). TSR and MSR pose mechanistic challenges. How can one determine the structure of the reactive transition state (TS) and its spin state for these mechanisms? Calculations can do it for us, but the challenge is to find experimental probes. There are, however, no clear kinetic signatures for the reactive-spin-state in such reactions. This is the paucity that our group has been trying to fill for sometime. Hence, it is timely to demonstrate how theory joins experiment in realizing this quest. This Account uses a set of the H-abstraction reactions of 24 synthetic oxoiron(IV) complexes and 11 hydrocarbons, together undergoing H-abstraction reactions with TSR/MSR options, which provide experimentally determined kinetic isotope effect (KIEexp) data. For this set, we demonstrate that comparing KIEexp results with calculated tunneling-augmented KIE (KIETC) data leads to a clear identification of the reactive spin-state during H-abstraction reactions. In addition, generating KIEexp data for a reaction of interest, and comparing these to KIETC values, provides the mechanistic chemist with a powerful capability to identify the reactive-TS in terms of not only its spin state but also its geometry and ligand-sphere constitution. Since tunneling "cuts through" barriers, it serves as a chemical selectivity factor. Thus, we show that in a family of oxoirons reacting with one hydrocarbon, the tunneling efficiency increases as the ligands become better electron donors. This generates counterintuitive-reactivity patterns, like antielectrophilic reactivity, and induces spin-state reactivity reversals because of differing steric demands of the corresponding 2S+1TS species, etc. Finally, for the same series, the Account reaches intuitive understanding of tunneling trends. It is shown that the increase of ligand's donicity results in electrostatic narrowing of the barrier, while the decrease of donicity and increase of bond-order asymmetry in the TS (inter alia due to Bell-Evans-Polanyi effects) broadens the barrier. Predictions are made that usage of powerful electron-donating ligands may train H-abstractors to activate the strongest C-H bond in a molecule. The concepts developed here are likely to be applicable to other oxometals in the d- and f-blocks.
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Affiliation(s)
- Debasish Mandal
- Institute of Chemistry, The Hebrew University of Jerusalem, Givat Ram Campus, 91904 Jerusalem, Israel
| | - Dibyendu Mallick
- Institute of Chemistry, The Hebrew University of Jerusalem, Givat Ram Campus, 91904 Jerusalem, Israel
| | - Sason Shaik
- Institute of Chemistry, The Hebrew University of Jerusalem, Givat Ram Campus, 91904 Jerusalem, Israel
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40
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Lamberts T, Kästner J. Tunneling Reaction Kinetics for the Hydrogen Abstraction Reaction H + H2S → H2 + HS in the Interstellar Medium. J Phys Chem A 2017; 121:9736-9741. [DOI: 10.1021/acs.jpca.7b10296] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Thanja Lamberts
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
| | - Johannes Kästner
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
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41
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Schreiner PR. Tunneling Control of Chemical Reactions: The Third Reactivity Paradigm. J Am Chem Soc 2017; 139:15276-15283. [DOI: 10.1021/jacs.7b06035] [Citation(s) in RCA: 116] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Peter R. Schreiner
- Institute of Organic Chemistry, Justus-Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany
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42
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Fang W, Richardson JO, Chen J, Li XZ, Michaelides A. Simultaneous Deep Tunneling and Classical Hopping for Hydrogen Diffusion on Metals. PHYSICAL REVIEW LETTERS 2017; 119:126001. [PMID: 29341641 DOI: 10.1103/physrevlett.119.126001] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2017] [Indexed: 06/07/2023]
Abstract
Hydrogen diffusion on metals exhibits rich quantum behavior, which is not yet fully understood. Using simulations, we show that many hydrogen diffusion barriers can be categorized into those with parabolic tops and those with broad tops. With parabolic-top barriers, hydrogen diffusion evolves gradually from classical hopping, to shallow tunneling, to deep tunneling as the temperature (T) decreases, and noticeable quantum effects persist at moderate T. In contrast, with broad-top barriers quantum effects become important only at low T and the classical-to-quantum transition is sharp, at which classical hopping and deep tunneling both occur. This coexistence indicates that more than one mechanism contributes to the quantum reaction rate. The conventional definition of the classical-to-quantum crossover T is invalid for the broad tops, and we give a new definition. Extending this, we propose a model to predict the transition T for broad-top diffusion, providing a general guide for theory and experiment.
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Affiliation(s)
- Wei Fang
- Thomas Young Centre, London Centre for Nanotechnology and Department of Chemistry, University College London, London WC1E 6BT, United Kingdom
| | | | - Ji Chen
- Thomas Young Centre, London Centre for Nanotechnology and Department of Physics and Astronomy, University College London, London WC1E 6BT, United Kingdom
| | - Xin-Zheng Li
- School of Physics and the Collaborative Innovation Center of Quantum Matters, Peking University, Beijing 100871, People's Republic of China
| | - Angelos Michaelides
- Thomas Young Centre, London Centre for Nanotechnology and Department of Physics and Astronomy, University College London, London WC1E 6BT, United Kingdom
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43
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Influence of Surface and Bulk Water Ice on the Reactivity of a Water-forming Reaction. ACTA ACUST UNITED AC 2017. [DOI: 10.3847/1538-4357/aa8311] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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44
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McConnell S, Kästner J. Instanton rate constant calculations close to and above the crossover temperature. J Comput Chem 2017; 38:2570-2580. [DOI: 10.1002/jcc.24914] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2017] [Revised: 07/24/2017] [Accepted: 07/25/2017] [Indexed: 01/17/2023]
Affiliation(s)
- Sean McConnell
- Institute for Theoretical Chemistry, University of Stuttgart; Pfaffenwaldring 55, Stuttgart 70569 Germany
| | - Johannes Kästner
- Institute for Theoretical Chemistry, University of Stuttgart; Pfaffenwaldring 55, Stuttgart 70569 Germany
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Nandi A, Gerbig D, Schreiner PR, Borden WT, Kozuch S. Isotope-Controlled Selectivity by Quantum Tunneling: Hydrogen Migration versus Ring Expansion in Cyclopropylmethylcarbenes. J Am Chem Soc 2017. [PMID: 28635268 DOI: 10.1021/jacs.7b04593] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Using the tunneling-controlled reactivity of cyclopropylmethylcarbene, we demonstrate the viability of isotope-controlled selectivity (ICS), a novel control element of chemical reactivity where a molecular system with two conceivable products of tunneling exclusively produces one or the other, depending only on isotopic composition. Our multidimensional small-curvature tunneling (SCT) computations indicate that, under cryogenic conditions, 1-methoxycyclopropylmethylcarbene shows rapid H-migration to 1-methoxy-1-vinylcyclopropane, whereas deuterium-substituted 1-methoxycyclopropyl-d3-methylcarbene undergoes ring expansion to 1-d3-methylcyclobutene. This predicted change in reactivity constitutes the first example of a kinetic isotope effect that discriminates between the formation of two products.
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Affiliation(s)
- Ashim Nandi
- Department of Chemistry, Ben-Gurion University of the Negev , Beer-Sheva 841051, Israel
| | - Dennis Gerbig
- Justus-Liebig University , Heinrich-Buff-Ring 17, 35392 Giessen, Germany
| | - Peter R Schreiner
- Justus-Liebig University , Heinrich-Buff-Ring 17, 35392 Giessen, Germany
| | - Weston Thatcher Borden
- Center for Advanced Scientific Computing and Modeling (CASCAM), Department of Chemistry, University of North Texas , Denton, Texas 76203, United States
| | - Sebastian Kozuch
- Department of Chemistry, Ben-Gurion University of the Negev , Beer-Sheva 841051, Israel
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Schäfer M, Peckelsen K, Paul M, Martens J, Oomens J, Berden G, Berkessel A, Meijer AJHM. Hydrogen Tunneling above Room Temperature Evidenced by Infrared Ion Spectroscopy. J Am Chem Soc 2017; 139:5779-5786. [PMID: 28282985 DOI: 10.1021/jacs.6b10348] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
While hydrogen tunneling at elevated temperatures has, for instance, often been postulated in biochemical processes, spectroscopic proof is thus far limited to cryogenic conditions, under which thermal reactivity is negligible. We report spectroscopic evidence for H-tunneling in the gas phase at temperatures around 320-350 K observed in the isomerization reaction of a hydroxycarbene into an aldehyde. The charge-tagged carbene was generated in situ in a tandem mass spectrometer by decarboxylation of oxo[4-(trimethylammonio)phenyl]acetic acid upon collision induced dissociation. All ion structures involved are characterized by infrared ion spectroscopy and quantum chemical calculations. The charge-tagged phenylhydroxycarbene undergoes a 1,2-H-shift to the corresponding aldehyde with an half-life of about 10 s, evidenced by isomer-selective two-color (IR-IR) spectroscopy. In contrast, the deuterated (OD) carbene analogue showed much reduced 1,2-D-shift reactivity with an estimated half-life of at least 200 s under the experimental conditions, and provides clear evidence for hydrogen atom tunneling in the H-isotopologue. This is the first spectroscopic confirmation of hydrogen atom tunneling governing 1,2-H-shift reactions at noncryogenic temperatures, which is of broad significance for a range of (bio)chemical processes, including enzymatic transformations and organocatalysis.
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Affiliation(s)
- Mathias Schäfer
- Department of Chemistry, Organic Chemistry, University of Cologne , Greinstraße 4, 50939 Cologne, Germany
| | - Katrin Peckelsen
- Department of Chemistry, Organic Chemistry, University of Cologne , Greinstraße 4, 50939 Cologne, Germany
| | - Mathias Paul
- Department of Chemistry, Organic Chemistry, University of Cologne , Greinstraße 4, 50939 Cologne, Germany
| | - Jonathan Martens
- Radboud University , Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7c, 6525 ED Nijmegen, The Netherlands
| | - Jos Oomens
- Radboud University , Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7c, 6525 ED Nijmegen, The Netherlands.,Van't Hoff Institute for Molecular Sciences, University of Amsterdam , Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Giel Berden
- Radboud University , Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7c, 6525 ED Nijmegen, The Netherlands
| | - Albrecht Berkessel
- Department of Chemistry, Organic Chemistry, University of Cologne , Greinstraße 4, 50939 Cologne, Germany
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Karmakar S, Datta A. Tunneling Control: Competition between 6π-Electrocyclization and [1,5]H-Sigmatropic Shift Reactions in Tetrahydro-1H-cyclobuta[e]indene Derivatives. J Org Chem 2017; 82:1558-1566. [DOI: 10.1021/acs.joc.6b02759] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Sharmistha Karmakar
- Department of Spectroscopy, Indian Association for the Cultivation of Science, 2A and 2B Raja S. C. Mullick Road,
Jadavpur, 700032 Kolkata, West Bengal, India
| | - Ayan Datta
- Department of Spectroscopy, Indian Association for the Cultivation of Science, 2A and 2B Raja S. C. Mullick Road,
Jadavpur, 700032 Kolkata, West Bengal, India
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Mardyukov A, Quanz H, Schreiner PR. Conformer-specific hydrogen atom tunnelling in trifluoromethylhydroxycarbene. Nat Chem 2016; 9:71-76. [DOI: 10.1038/nchem.2609] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2016] [Accepted: 09/09/2016] [Indexed: 11/09/2022]
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Meisner J, Kästner J. Reaction rates and kinetic isotope effects of H2 + OH → H2O + H. J Chem Phys 2016; 144:174303. [DOI: 10.1063/1.4948319] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jan Meisner
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
| | - Johannes Kästner
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
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