1
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Morse J, Nadiveedhi MR, Schmidt M, Tang FK, Hladun C, Ganesh P, Qiu Z, Leung K. Tunable Cytosolic Chloride Indicators for Real-Time Chloride Imaging in Live Cells. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.08.08.606814. [PMID: 39149292 PMCID: PMC11326291 DOI: 10.1101/2024.08.08.606814] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 08/17/2024]
Abstract
Chloride plays a crucial role in various cellular functions, and its level is regulated by a variety of chloride transporters and channels. However, to date, we still lack the capability to image instantaneous ion flux through chloride channels at single-cell level. Here, we developed a series of cell-permeable, pH-independent, chloride-sensitive fluorophores for real-time cytosolic chloride imaging, which we call CytoCl dyes. We demonstrated the ability of CytoCl dyes to monitor cytosolic chloride and used it to uncover the rapid changes and transient events of halide flux, which cannot be captured by steady-state imaging. Finally, we successfully imaged the proton-activated chloride channel-mediated ion flux at single-cell level, which is, to our knowledge, the first real-time imaging of ion flux through a chloride channel in unmodified cells. By enabling the imaging of single-cell level ion influx through chloride channels and transporters, CytoCl dyes can expand our understanding of ion flux dynamics, which is critical for characterization and modulator screening of these membrane proteins. A conjugable version of CytoCl dyes was also developed for its customization across different applications.
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Affiliation(s)
- Jared Morse
- Department of Chemistry & Biochemistry, Clarkson University, NY 13676, United States
| | | | - Matthias Schmidt
- Department of Chemistry & Biochemistry, Clarkson University, NY 13676, United States
| | - Fung-Kit Tang
- Department of Chemistry & Biochemistry, Clarkson University, NY 13676, United States
| | - Colby Hladun
- Department of Chemistry & Biochemistry, Clarkson University, NY 13676, United States
| | - Prasanna Ganesh
- Department of Chemistry & Biochemistry, Clarkson University, NY 13676, United States
| | - Zhaozhu Qiu
- Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, MD 21205, United States
| | - Kaho Leung
- Department of Chemistry & Biochemistry, Clarkson University, NY 13676, United States
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2
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Tutol J, Ong WSY, Phelps SM, Peng W, Goenawan H, Dodani SC. Engineering the ChlorON Series: Turn-On Fluorescent Protein Sensors for Imaging Labile Chloride in Living Cells. ACS CENTRAL SCIENCE 2024; 10:77-86. [PMID: 38292617 PMCID: PMC10823515 DOI: 10.1021/acscentsci.3c01088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 11/02/2023] [Accepted: 11/27/2023] [Indexed: 02/01/2024]
Abstract
Beyond its role as the "queen of electrolytes", chloride can also serve as an allosteric regulator or even a signaling ion. To illuminate this essential anion across such a spectrum of biological processes, researchers have relied on fluorescence imaging with genetically encoded sensors. In large part, these have been derived from the green fluorescent protein found in the jellyfish Aequorea victoria. However, a standalone sensor with a turn-on intensiometric response at physiological pH has yet to be reported. Here, we address this technology gap by building on our discovery of the anion-sensitive fluorescent protein mNeonGreen (mNG). The targeted engineering of two non-coordinating residues, namely K143 and R195, in the chloride binding pocket of mNG coupled with an anion walking screening and selection strategy resulted in the ChlorON sensors: ChlorON-1 (K143W/R195L), ChlorON-2 (K143R/R195I), and ChlorON-3 (K143R/R195L). In vitro spectroscopy revealed that all three sensors display a robust turn-on fluorescence response to chloride (20- to 45-fold) across a wide range of affinities (Kd ≈ 30-285 mM). We further showcase how this unique sensing mechanism can be exploited to directly image labile chloride transport with spatial and temporal resolution in a cell model overexpressing the cystic fibrosis transmembrane conductance regulator. Building from this initial demonstration, we anticipate that the ChlorON technology will have broad utility, accelerating the path forward for fundamental and translational aspects of chloride biology.
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Affiliation(s)
- Jasmine
N. Tutol
- Department
of Chemistry and Biochemistry and Department of Biological Sciences, The University of Texas at Dallas, Richardson, Texas 75080, United States
| | - Whitney S. Y. Ong
- Department
of Chemistry and Biochemistry and Department of Biological Sciences, The University of Texas at Dallas, Richardson, Texas 75080, United States
| | - Shelby M. Phelps
- Department
of Chemistry and Biochemistry and Department of Biological Sciences, The University of Texas at Dallas, Richardson, Texas 75080, United States
| | - Weicheng Peng
- Department
of Chemistry and Biochemistry and Department of Biological Sciences, The University of Texas at Dallas, Richardson, Texas 75080, United States
| | - Helen Goenawan
- Department
of Chemistry and Biochemistry and Department of Biological Sciences, The University of Texas at Dallas, Richardson, Texas 75080, United States
| | - Sheel C. Dodani
- Department
of Chemistry and Biochemistry and Department of Biological Sciences, The University of Texas at Dallas, Richardson, Texas 75080, United States
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3
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Agius N, Magri DC. Cinchona alkaloids - acid, anion-driven fluorescent INHIBIT logic gates with a receptor 1-fluorophore-spacer-receptor 2 format and PET and ICT mechanisms. RSC Adv 2023; 13:13505-13510. [PMID: 37143912 PMCID: PMC10153600 DOI: 10.1039/d3ra02704j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Accepted: 04/25/2023] [Indexed: 05/06/2023] Open
Abstract
The fluorescent natural products, quinine, quinidine, cinchonine and cinchonidine are demonstrated as H+-enabled, halide-disabled (Cl-, Br- or I-) INHIBIT and INHIBIT-OR combinatorial logic gates in water. More fluorescent natural products with intrinsic logic properties await to be discovered.
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Affiliation(s)
- Nicola' Agius
- Department of Chemistry, Faculty of Science, University of Malta Msida MSD 2080 Malta
| | - David C Magri
- Department of Chemistry, Faculty of Science, University of Malta Msida MSD 2080 Malta
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4
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Viviano-Posadas AO, Romero-Mendoza U, Bazany-Rodríguez IJ, Velázquez-Castillo RV, Martínez-Otero D, Bautista-Renedo JM, González-Rivas N, Galindo-Murillo R, Salomón-Flores MK, Dorazco-González A. Efficient fluorescent recognition of ATP/GTP by a water-soluble bisquinolinium pyridine-2,6-dicarboxamide compound. Crystal structures, spectroscopic studies and interaction mode with DNA. RSC Adv 2022; 12:27826-27838. [PMID: 36320280 PMCID: PMC9520314 DOI: 10.1039/d2ra05040d] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 09/21/2022] [Indexed: 11/04/2023] Open
Abstract
The new dicationic pyridine-2,6-dicarboxamide-based compound 1 bearing two N-alkylquinolinium units was synthesized, structurally determined by single-crystal X-ray diffraction, and studied in-depth as a fluorescent receptor for nucleotides and inorganic phosphorylated anions in pure water. The addition of nucleotides to 1 at pH = 7.0 quenches its blue emission with a selective affinity towards adenosine 5'-triphosphate (ATP) and guanosine 5'-tripohosphate (GTP) over other nucleotides such CTP, UTP, ADP, AMP, dicarboxylates and inorganic anions. On the basis of the spectroscopic tools (1H, 31P NMR, UV-vis, fluorescence), MS measurements and DFT calculations, receptor 1 binds ATP with high affinity (log K = 5.04) through the simultaneous formation of strong hydrogen bonds and π-π interactions between the adenosine fragment and quinolinium ring with binding energy calculated in 8.7 kcal mol-1. High affinity for ATP/GTP is attributed to the high acidity of amides and preorganized rigid structure of 1. Receptor 1 is an order of magnitude more selective for ATP than GTP. An efficient photoinduced electron transfer quenching mechanism with simultaneous receptor-ATP complexation in both the excited and ground states is proposed. Additionally, multiple spectroscopic studies and molecular dynamics simulations showed that 1 can intercalate into DNA base pairs.
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Affiliation(s)
- Alejandro O Viviano-Posadas
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
| | - Ulises Romero-Mendoza
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
| | - Iván J Bazany-Rodríguez
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
| | - Rocío V Velázquez-Castillo
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
| | - Diego Martínez-Otero
- Centro Conjunto de Investigación en Química Sustentable UAEM-UNAM km 14.5 Carrera Toluca-Atlacomulco, Campus UAEMex "El Rosedal" San Cayetano-Toluca Toluca de Lerdo 50200 Estado de México Mexico
| | - Joanatan M Bautista-Renedo
- Centro Conjunto de Investigación en Química Sustentable UAEM-UNAM km 14.5 Carrera Toluca-Atlacomulco, Campus UAEMex "El Rosedal" San Cayetano-Toluca Toluca de Lerdo 50200 Estado de México Mexico
| | - Nelly González-Rivas
- Centro Conjunto de Investigación en Química Sustentable UAEM-UNAM km 14.5 Carrera Toluca-Atlacomulco, Campus UAEMex "El Rosedal" San Cayetano-Toluca Toluca de Lerdo 50200 Estado de México Mexico
| | - Rodrigo Galindo-Murillo
- Department of Medicinal Chemistry, College of Pharmacy, University of Utah 2000 East 30 South Skaggs 306 Salt Lake City 84112 Utah USA
| | - María K Salomón-Flores
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
| | - Alejandro Dorazco-González
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
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5
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pH-guided fluorescent sensing probe for the discriminative detection of Cl− and Br− in human serum. Anal Chim Acta 2022; 1210:339879. [DOI: 10.1016/j.aca.2022.339879] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Revised: 03/21/2022] [Accepted: 04/24/2022] [Indexed: 11/22/2022]
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6
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Wang D, Xia T, Wang Y, Chen Y, Zhang C, Murray W, Schultz AT, Liu Z, Yang J. Citrate-based fluorometric sensor for multi-halide sensing. SMART MATERIALS IN MEDICINE 2022; 3:374-381. [PMID: 38031570 PMCID: PMC10686323 DOI: 10.1016/j.smaim.2022.05.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/01/2023]
Abstract
Halides play important roles in human health and environmental monitoring. However, different halides interfere with each other in current measurement methods. Simultaneous sensing of multiple halides in a fast and low-cost manner remains a challenge. Here, we report a fluorometric multi-halide sensing method by using a single citrate-based fluorophore, CA-Cys, on a custom-made portable device. The fluorescence emitted by CA-Cys is quenched due to the dynamic quenching of halide ions; the sensitivities vary from halide types and pH, providing the capability to obtain multiple Stern-Volmer equations at various pH values. The concentration of each halide can then be obtained by solving the resultant set of equations. A mM scale detection limit is demonstrated, which is suitable for halide wastewater monitoring. A proof-of-concept smartphone-based portable device is also fabricated and tested. The results from the fluorometer and portable device indicated that our multi-halide system is promising for real-world multi-halide sensing applications. This work represents a new direction in developing portable, low-cost, and simultaneous multi-halide sensing technologies.
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Affiliation(s)
- Dingbowen Wang
- Department of Biomedical Engineering, Materials Research Institute, The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Tunan Xia
- Department of Electrical Engineering, Materials Research Institute, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Yuqi Wang
- Department of Biomedical Engineering, Materials Research Institute, The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Yizhu Chen
- Department of Electrical Engineering, Materials Research Institute, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Chenji Zhang
- Department of Electrical Engineering, Materials Research Institute, The Pennsylvania State University, University Park, PA, 16802, USA
| | - William Murray
- Department of Electrical Engineering, Materials Research Institute, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Adam Thomas Schultz
- Department of Biomedical Engineering, Materials Research Institute, The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Zhiwen Liu
- Department of Electrical Engineering, Materials Research Institute, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Jian Yang
- Department of Biomedical Engineering, Materials Research Institute, The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, 16802, USA
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7
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Khokhar V, Deepika, Pandey S. Prototropic behavior of naphthalene derived probes in deep eutectic solvents. J Photochem Photobiol A Chem 2022. [DOI: 10.1016/j.jphotochem.2022.113798] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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8
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Ponomareva D, Petukhova E, Bregestovski P. Simultaneous Monitoring of pH and Chloride (Cl -) in Brain Slices of Transgenic Mice. Int J Mol Sci 2021; 22:13601. [PMID: 34948398 PMCID: PMC8708776 DOI: 10.3390/ijms222413601] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2021] [Revised: 12/13/2021] [Accepted: 12/14/2021] [Indexed: 11/16/2022] Open
Abstract
Optosensorics is the direction of research possessing the possibility of non-invasive monitoring of the concentration of intracellular ions or activity of intracellular components using specific biosensors. In recent years, genetically encoded proteins have been used as effective optosensory means. These probes possess fluorophore groups capable of changing fluorescence when interacting with certain ions or molecules. For monitoring of intracellular concentrations of chloride ([Cl-]i) and hydrogen ([H+] i) the construct, called ClopHensor, which consists of a H+- and Cl--sensitive variant of the enhanced green fluorescent protein (E2GFP) fused with a monomeric red fluorescent protein (mDsRed) has been proposed. We recently developed a line of transgenic mice expressing ClopHensor in neurons and obtained the map of its expression in different areas of the brain. The purpose of this study was to examine the effectiveness of transgenic mice expressing ClopHensor for estimation of [H+]i and [Cl-]i concentrations in neurons of brain slices. We performed simultaneous monitoring of [H+]i and [Cl-]i under different experimental conditions including changing of external concentrations of ions (Ca2+, Cl-, K+, Na+) and synaptic stimulation of Shaffer's collaterals of hippocampal slices. The results obtained illuminate different pathways of regulation of Cl- and pH equilibrium in neurons and demonstrate that transgenic mice expressing ClopHensor represent a reliable tool for non-invasive simultaneous monitoring of intracellular Cl- and pH.
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Affiliation(s)
- Daria Ponomareva
- Institut de Neurosciences des Systèmes, Aix-Marseille University, INSERM, INS, 13005 Marseille, France;
- Institute of Neurosciences, Kazan State Medical University, 420111 Kazan, Russia;
- Department of Normal Physiology, Kazan State Medical University, 420111 Kazan, Russia
| | - Elena Petukhova
- Institute of Neurosciences, Kazan State Medical University, 420111 Kazan, Russia;
- Department of Normal Physiology, Kazan State Medical University, 420111 Kazan, Russia
| | - Piotr Bregestovski
- Institut de Neurosciences des Systèmes, Aix-Marseille University, INSERM, INS, 13005 Marseille, France;
- Institute of Neurosciences, Kazan State Medical University, 420111 Kazan, Russia;
- Department of Normal Physiology, Kazan State Medical University, 420111 Kazan, Russia
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9
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Agius N, Magri DC. A fluorescent polymeric INHIBIT logic gate based on the natural product quinidine. NEW J CHEM 2021. [DOI: 10.1039/d1nj03045k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
The natural product quinidine was polymerised with acrylamide and demonstrated as a H+-enabled, Cl−-disabled INHIBIT logic gate in water.
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Affiliation(s)
- Nicola’ Agius
- Department of Chemistry
- Faculty of Science
- University of Malta
- Msida
- Malta
| | - David C. Magri
- Department of Chemistry
- Faculty of Science
- University of Malta
- Msida
- Malta
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10
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Ding L, Lian Y, Lin Z, Zhang Z, Wang XD. Long-Term Quantitatively Imaging Intracellular Chloride Concentration Using a Core-/Shell-Structured Nanosensor and Time-Domain Dual-Lifetime Referencing Method. ACS Sens 2020; 5:3971-3978. [PMID: 33253540 DOI: 10.1021/acssensors.0c01671] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Luminescence lifetime-based nanosensors for chloride ions were designed by incorporating a luminescent ruthenium dye [Ru(1,10-phenanthroline)3] inside silica nanoparticles and chemically labelling their outer surface with chloride ion-sensitive fluorescent dyes (N,N'-bis(carboxypropyl)-9,9'-biacridine). The nanosensor surface was further functionalized with positively charged amino groups to facilitate intracellular uptake via endocytosis and target lysosomes. The nanosensors have an average diameter of 52 nm and are monodispersed in aqueous solutions. Because of the long lifetime of the reference ruthenium dye, the sensor response can be analyzed using the time-domain dual-lifetime referencing (td-DLR) approach. The use of pulsed excitation in td-DLR rather than intense continuous illumination in ratiometric measurements greatly prevents the dye from photobleaching which significantly improves its measurement stability and reproducibility for long-term monitoring. At optimum conditions, the sensor can measure chloride concentration in the range of 0-200 mM with a large ratiometric signal change from 140.9 to 40.2. Combined with our custom-built microscopic td-DLR system, variations of intracellular chloride concentration in lysosomes were imaged quantitatively with a high spatial resolution and accuracy.
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Affiliation(s)
- Longjiang Ding
- Department of Chemistry, Fudan University, 200433 Shanghai, P. R. China
| | - Ying Lian
- Department of Chemistry, Fudan University, 200433 Shanghai, P. R. China
| | - Zhenzhen Lin
- Department of Chemistry, Fudan University, 200433 Shanghai, P. R. China
| | - Zeyu Zhang
- Department of Chemistry, Fudan University, 200433 Shanghai, P. R. China
| | - Xu-dong Wang
- Department of Chemistry, Fudan University, 200433 Shanghai, P. R. China
- Human Phenome Institute, Fudan University, 200433 Shanghai, P. R. China
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11
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Li J, Zhai J, Wang Y, Yang W, Xie X. Dual functional luminescent nanoprobes for monitoring oxygen and chloride concentration changes in cells. Chem Commun (Camb) 2020; 56:14980-14983. [PMID: 33179655 DOI: 10.1039/d0cc06258h] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
A dual functional nanoprobe Pd-Q+@PDMS was proposed to simultaneously monitor Cl- and O2, leading to the determination of an average Cl- concentration of 85.7 ± 5.5 mM in lysosomes of HeLa cells. Mimicking ischemic conditions, the cells exhibited a luminescence change corresponding to a decreasing subcellular Cl- concentration.
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Affiliation(s)
- Jing Li
- School of Chemistry and Chemical Engineering, Harbin Institute of Technology, Harbin 150001, China
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12
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Badugu R, Szmacinski H, Reece EA, Jeng BH, Lakowicz JR. Fluorescent contact lens for continuous non-invasive measurements of sodium and chloride ion concentrations in tears. Anal Biochem 2020; 608:113902. [PMID: 32800702 DOI: 10.1016/j.ab.2020.113902] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Revised: 07/20/2020] [Accepted: 08/03/2020] [Indexed: 11/17/2022]
Abstract
Rapid and non-invasive measurement of hydration status is medically important because even mild levels of dehydration can have a significant impact on physical and cognitive performance. Despite the potential value of determining whole-body hydration based on the electrolytes found in tears, very few tests are available. An area of intense interest is the development of a contact lens which could measure ion concentrations in tears, specifically that of sodium (Na+) and chloride (Cl-) ions, the dominant electrolytes in blood plasma and tears. Here, we describe a method to make fluorescent contact lenses which allow determination of Na+ and Cl- ion concentrations in tears. Fluorophores known to be sensitive to Na+ and Cl- were derivatized to bind non-covalently to two commercially-available silicone hydrogel (SiHG) contact lenses-the Biofinity (Comfilcon A) or MyDay (Stenfilcon A) lenses. The sodium- and chloride-sensitive fluorophores displayed spectral changes in the physiological range for Na+ and Cl- ions in tears. The lenses for both Na+ and Cl- ions were completely reversible. The sodium responses were not sensitive to protein interference including human lysozyme, human serum albumin and mucin type 2. The chloride sensitivity was similar with both lenses, but the sodium-sensitive range was different in the Biofinity and MyDay lenses. We also fabricated a lens with both the Na+ and Cl- probes in a single MyDay lens resulting in a contact lens that independently measured Na+ and Cl- concentrations without physical separation of the fluorophores. Our findings indicated that a sodium and chloride-sensitive contact lens (NaCl-lens) could be used for rapid non-invasive detection of whole-body hydration, as well as associated diseases or other infections.
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Affiliation(s)
- Ramachandram Badugu
- Center for Fluorescence Spectroscopy, Department of Biochemistry and Molecular Biology, University of Maryland School of Medicine, 725 West Lombard St., Baltimore, MD, 21201, USA.
| | - Henryk Szmacinski
- Center for Fluorescence Spectroscopy, Department of Biochemistry and Molecular Biology, University of Maryland School of Medicine, 725 West Lombard St., Baltimore, MD, 21201, USA
| | - E Albert Reece
- Department of Obstetrics, Gynecology and Reproductive Sciences, University of Maryland School of Medicine, 655 W. Baltimore Street, Baltimore, MD, 21201, USA; Department of Biochemistry and Molecular Biology, University of Maryland School of Medicine, 655 W. Baltimore Street, Baltimore, Md, 21201, USA; Department of Medicine, University of Maryland School of Medicine, 655 W. Baltimore Street, Baltimore, Md, 21201, USA
| | - Bennie H Jeng
- Department of Ophthalmology & Visual Sciences, University of Maryland School of Medicine, 419 W. Redwood Street, Baltimore, Md, 21201, USA
| | - Joseph R Lakowicz
- Center for Fluorescence Spectroscopy, Department of Biochemistry and Molecular Biology, University of Maryland School of Medicine, 725 West Lombard St., Baltimore, MD, 21201, USA.
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13
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Valdes-García J, Rosales-Vázquez LD, Bazany-Rodríguez IJ, Dorazco-González A. Recent Advances in Luminescent Recognition and Chemosensing of Iodide in Water. Chem Asian J 2020; 15:2925-2938. [PMID: 32755069 DOI: 10.1002/asia.202000758] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Revised: 07/31/2020] [Indexed: 12/12/2022]
Abstract
This Minireview covers the latest developments of chemosensors based on transition-metal receptors and organic fluorophores with specific binding sites for the luminescent detection and recognition of iodide in aqueous media and real samples. In all selected examples within the last decade (made-post 2010), the iodide sensing and recognition is probed by monitoring real-time changes of the fluorescence or phosphorescence properties of the chemosensors. This review highlights effective strategies to iodide sensing from a structural approach where the iodide recognition/sensing process, through supramolecular interactions as coordination bonds, hydrogen bonds, halogen bonds and electrostatic interactions, is transduced into an optical change easily measurable. The selective iodide sensing is an active field of research with global interest due to the importance of iodide in biological, medicinal, industrial, environmental and chemical processes.
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Affiliation(s)
- Josue Valdes-García
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, México, 04510, CDMX., México
| | - Luis D Rosales-Vázquez
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, México, 04510, CDMX., México
| | - Iván J Bazany-Rodríguez
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, México, 04510, CDMX., México
| | - Alejandro Dorazco-González
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, México, 04510, CDMX., México
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14
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Dhar S, Yadav P, Pramanik S, Sarkar K, Chattopadhayay AP. Green synthesized silver NPs: fluorescence sensor for Cl− ions in aqueous solution in biological pH and cell viability study. SN APPLIED SCIENCES 2020. [DOI: 10.1007/s42452-020-2460-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
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15
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Zhang F, Ma C, Jiao Z, Mu S, Zhang Y, Liu X, Zhang H. A NIR Turn-on Fluorescent Sensor For Detection of Chloride Ions in vitro and in vivo. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 228:117729. [PMID: 31740122 DOI: 10.1016/j.saa.2019.117729] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2019] [Revised: 10/21/2019] [Accepted: 10/28/2019] [Indexed: 06/10/2023]
Abstract
As the most abundant and significant anions in biosystem, chloride ions (Cl-) participate in many important physiological processes. Thus, designing and synthesizing of a simple, sensitive, selective and long wavelength turn-on sensor for the detection and imaging of Cl- in vitro and in vivo is very necessary. Herein, we have developed a simple porphyrin turn-on sensor 5, 10, 15, 20-Tetrakis (4-hydroxyphenyl) porphyrin (THPP) with near infrared emission wavelength (657 nm) for sensing chloride ions with remarkable sensitivity and selectivity. The detection of chloride ions was according to metal displacement assay (MDA) under physiological condition with a detection limit of 7.5 μM, and was applied to image Cl- in vitro and in vivo successfully.
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Affiliation(s)
- Fengyuan Zhang
- State Key Laboratory of Applied Organic Chemistry and College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, 730000, China; School of Basic Medical Science, Ningxia Medical University, Yinchuan, 750004, China
| | - Chen Ma
- State Key Laboratory of Applied Organic Chemistry and College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, 730000, China
| | - Zhijuan Jiao
- State Key Laboratory of Applied Organic Chemistry and College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, 730000, China
| | - Shuai Mu
- State Key Laboratory of Applied Organic Chemistry and College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, 730000, China
| | - Yida Zhang
- State Key Laboratory of Applied Organic Chemistry and College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, 730000, China
| | - Xiaoyan Liu
- State Key Laboratory of Applied Organic Chemistry and College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, 730000, China
| | - Haixia Zhang
- State Key Laboratory of Applied Organic Chemistry and College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, 730000, China.
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16
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Zajac M, Chakraborty K, Saha S, Mahadevan V, Infield DT, Accardi A, Qiu Z, Krishnan Y. What biologists want from their chloride reporters – a conversation between chemists and biologists. J Cell Sci 2020; 133:133/2/jcs240390. [DOI: 10.1242/jcs.240390] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
ABSTRACT
Impaired chloride transport affects diverse processes ranging from neuron excitability to water secretion, which underlie epilepsy and cystic fibrosis, respectively. The ability to image chloride fluxes with fluorescent probes has been essential for the investigation of the roles of chloride channels and transporters in health and disease. Therefore, developing effective fluorescent chloride reporters is critical to characterizing chloride transporters and discovering new ones. However, each chloride channel or transporter has a unique functional context that demands a suite of chloride probes with appropriate sensing characteristics. This Review seeks to juxtapose the biology of chloride transport with the chemistries underlying chloride sensors by exploring the various biological roles of chloride and highlighting the insights delivered by studies using chloride reporters. We then delineate the evolution of small-molecule sensors and genetically encoded chloride reporters. Finally, we analyze discussions with chloride biologists to identify the advantages and limitations of sensors in each biological context, as well as to recognize the key design challenges that must be overcome for developing the next generation of chloride sensors.
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Affiliation(s)
- Matthew Zajac
- Department of Chemistry, The University of Chicago, Chicago, IL 60637, USA
- Grossman Institute of Neuroscience, Quantitative Biology and Human Behavior, The University of Chicago, Chicago, IL 60637, USA
| | - Kasturi Chakraborty
- Department of Chemistry, The University of Chicago, Chicago, IL 60637, USA
- Grossman Institute of Neuroscience, Quantitative Biology and Human Behavior, The University of Chicago, Chicago, IL 60637, USA
- Ben May Department for Cancer Research, The University of Chicago, Chicago, IL 60637, USA
| | - Sonali Saha
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), 13125 Berlin, Germany
| | - Vivek Mahadevan
- Department of Cell & Systems Biology, University of Toronto, Toronto, ON M5S 3G5, Canada
| | - Daniel T. Infield
- Department of Molecular Physiology and Biophysics, The University of Iowa, Iowa City, IA 52242, USA
| | - Alessio Accardi
- Department of Anesthesiology, Weill Cornell Medical School, New York, NY 10065, USA
- Department of Physiology and Biophysics, Weill Cornell Medical School, New York, NY 10065, USA
- Department of Biochemistry, Weill Cornell Medical School, New York, NY 10065, USA
| | - Zhaozhu Qiu
- Department of Physiology, Johns Hopkins University School of Medicine, Baltimore, MD 21218, USA
- Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21218, USA
| | - Yamuna Krishnan
- Department of Chemistry, The University of Chicago, Chicago, IL 60637, USA
- Grossman Institute of Neuroscience, Quantitative Biology and Human Behavior, The University of Chicago, Chicago, IL 60637, USA
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17
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Zhang F, Ma C, Wang Y, Liu W, Liu X, Zhang H. Fluorescent probes for chloride ions in biological samples. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 205:428-434. [PMID: 30053636 DOI: 10.1016/j.saa.2018.07.060] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Revised: 07/16/2018] [Accepted: 07/20/2018] [Indexed: 06/08/2023]
Abstract
As one of the most widespread anions, chloride ion largely existed in the water sources as well as living organism. Therefore, determination of chloride ions in biological samples is evidently important. Herein, we developed two analogous fluorescence probes BeQ1 and BeQ2 for the sensitive detection of chloride ions. The chloride ions in biological samples were determined by a direct and simple method with the detection limit of 46 and 66 μM respectively. In addition, the probes were found having the two-photon excitation property.
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Affiliation(s)
- Fengyuan Zhang
- College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, China; School of Basic Medical Science, Ningxia Medical University, Yinchuan 750004, China
| | - Chen Ma
- College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, China
| | - Yaya Wang
- College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, China
| | - Wei Liu
- College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, China
| | - Xiaoyan Liu
- College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, China
| | - Haixia Zhang
- College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, China.
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18
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Synthesis and application of ratio fluorescence probe for chloride. Anal Bioanal Chem 2018; 410:6507-6516. [DOI: 10.1007/s00216-018-1250-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2018] [Revised: 06/08/2018] [Accepted: 07/06/2018] [Indexed: 11/25/2022]
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19
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Syntheses and characterizations of secondary Pb–O bonding supported Pb(II)-sulfonate complexes. J SOLID STATE CHEM 2018. [DOI: 10.1016/j.jssc.2018.03.025] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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20
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Rodríguez-Prieto F, Corbelle CC, Fernández B, Pedro JA, Ríos Rodríguez MC, Mosquera M. Fluorescence quenching of the N-methylquinolinium cation by pairs of water or alcohol molecules. Phys Chem Chem Phys 2018; 20:307-316. [DOI: 10.1039/c7cp07057h] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The proposed mechanism involves an electron transfer from H2O/ROH to the excited quinolinium, concerted with proton transfer to the second hydroxy molecule.
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Affiliation(s)
- Flor Rodríguez-Prieto
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS)
- Universidade de Santiago de Compostela
- E-15782 Santiago de Compostela
- Spain
- Departamento de Química Física
| | - Carlos Costa Corbelle
- Departamento de Química Física
- Facultade de Química
- Universidade de Santiago de Compostela
- E-15782 Santiago de Compostela
- Spain
| | - Berta Fernández
- Departamento de Química Física
- Facultade de Química
- Universidade de Santiago de Compostela
- E-15782 Santiago de Compostela
- Spain
| | - Jorge A. Pedro
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS)
- Universidade de Santiago de Compostela
- E-15782 Santiago de Compostela
- Spain
| | - M. Carmen Ríos Rodríguez
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS)
- Universidade de Santiago de Compostela
- E-15782 Santiago de Compostela
- Spain
- Departamento de Química Física
| | - Manuel Mosquera
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS)
- Universidade de Santiago de Compostela
- E-15782 Santiago de Compostela
- Spain
- Departamento de Química Física
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21
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A smartphone-based chloridometer for point-of-care diagnostics of cystic fibrosis. Biosens Bioelectron 2017; 97:164-168. [DOI: 10.1016/j.bios.2017.05.048] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2017] [Revised: 05/23/2017] [Accepted: 05/26/2017] [Indexed: 12/13/2022]
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22
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Prakash V, Saha S, Chakraborty K, Krishnan Y. Rational design of a quantitative, pH-insensitive, nucleic acid based fluorescent chloride reporter. Chem Sci 2016; 7:1946-1953. [PMID: 30050672 PMCID: PMC6042475 DOI: 10.1039/c5sc04002g] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2015] [Accepted: 12/01/2015] [Indexed: 12/29/2022] Open
Abstract
Chloride plays a major role in cellular homeostasis by regulating the lumenal pH of intracellular organelles. We have described a pH-independent, fluorescent chloride reporter called Clensor that has successfully measured resting chloride in organelles of living cells. Here, we describe the rational design of Clensor. Clensor integrates a chloride sensitive fluorophore called 10,10'-bis[3-carboxypropyl]-9,9'-biacridinium dinitrate (BAC) with the programmability, modularity and targetability available to nucleic acid scaffolds. We show that simple conjugation of BAC to a DNA backbone fails to yield a viable chloride-sensitive reporter. Fluorescence intensity and lifetime investigations on a series of BAC-functionalized structural variants yielded molecular insights that guided the rational design and successful realization of the chloride sensitive fluorescent reporter, Clensor. This study provides some general design principles that would aid the realization of diverse ion-sensitive nucleic acid reporters based on the sensing strategy of Clensor.
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Affiliation(s)
- Ved Prakash
- Department of Chemistry and the Grossman Institute , University of Chicago , 929E, 57th Street, E305A, GCIS , Chicago , Illinois 60637 , USA .
| | - Sonali Saha
- National Centre for Biological Sciences , TIFR, GKVK, Bellary Road , Bangalore 560065 , India
| | - Kasturi Chakraborty
- Department of Chemistry and the Grossman Institute , University of Chicago , 929E, 57th Street, E305A, GCIS , Chicago , Illinois 60637 , USA .
| | - Yamuna Krishnan
- Department of Chemistry and the Grossman Institute , University of Chicago , 929E, 57th Street, E305A, GCIS , Chicago , Illinois 60637 , USA .
- National Centre for Biological Sciences , TIFR, GKVK, Bellary Road , Bangalore 560065 , India
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23
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Kataev EA, Backmann N, Shumilova TA, Rüffer T, Lang H. Calix[4]pyrroles bearing quinolinium moiety for halide sensing in aqueous solution. Supramol Chem 2016. [DOI: 10.1080/10610278.2015.1073730] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Evgeny A. Kataev
- Institute of Chemistry, Faculty of Natural Sciences, Technische Universität Chemnitz, 09107 Chemnitz, Germany
| | - Nanett Backmann
- Institute of Chemistry, Faculty of Natural Sciences, Technische Universität Chemnitz, 09107 Chemnitz, Germany
| | - Tatiana A. Shumilova
- Institute of Chemistry, Faculty of Natural Sciences, Technische Universität Chemnitz, 09107 Chemnitz, Germany
| | - Tobias Rüffer
- Institute of Chemistry, Faculty of Natural Sciences, Technische Universität Chemnitz, 09107 Chemnitz, Germany
| | - Heinrich Lang
- Institute of Chemistry, Faculty of Natural Sciences, Technische Universität Chemnitz, 09107 Chemnitz, Germany
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24
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25
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Ashton TD, Jolliffe KA, Pfeffer FM. Luminescent probes for the bioimaging of small anionic species in vitro and in vivo. Chem Soc Rev 2015; 44:4547-95. [DOI: 10.1039/c4cs00372a] [Citation(s) in RCA: 287] [Impact Index Per Article: 31.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
This comprehensive review examines recent developments in the use of fluorescent/luminescent probes for the bioimaging of anionic species. Images in cover art reproduced with permission from ref. 290 and 306.
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Affiliation(s)
- Trent D. Ashton
- Centre for Chemistry and Biotechnology
- School of Life and Environmental Sciences
- Deakin University
- Waurn Ponds
- Australia
| | - Katrina A. Jolliffe
- School of Chemistry
- School of Chemistry (F11)
- The University of Sydney
- Sydney
- Australia
| | - Frederick M. Pfeffer
- Centre for Chemistry and Biotechnology
- School of Life and Environmental Sciences
- Deakin University
- Waurn Ponds
- Australia
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26
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Dorazco-Gonzalez A. Chemosensing of Chloride Based on a Luminescent Platinum(II) NCN Pincer Complex in Aqueous Media. Organometallics 2014. [DOI: 10.1021/om4007054] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Alejandro Dorazco-Gonzalez
- Centro
Conjunto de Investigación en Quı́mica Sustentable
UAEM-UNAM, Instituto de Quı́mica, Universidad Nacional Autónoma de México, Carretera Toluca-Atlacomulco Km
14.5, C. P. 50200, Toluca, Estado de México, México
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27
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Collins CG, Peck EM, Kramer PJ, Smith BD. Squaraine rotaxane shuttle as a ratiometric deep-red optical chloride sensor. Chem Sci 2013. [DOI: 10.1039/c3sc50535a] [Citation(s) in RCA: 76] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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28
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Baù L, Selvestrel F, Arduini M, Zamparo I, Lodovichi C, Mancin F. A cell-penetrating ratiometric nanoprobe for intracellular chloride. Org Lett 2012; 14:2984-7. [PMID: 22630166 DOI: 10.1021/ol300086w] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
NanoChlor, a nanoparticle-based fluorescent probe for chloride that is both ratiometric and capable of spontaneously penetrating neuronal cells at submillimolar concentrations, was designed and studied. NanoChlor is built on silica nanoparticles grafted with 6-methoxyquinolinium as the chloride-sensitive component and fluorescein as the reference dye. A Stern-Volmer constant of 50 M(-1) was measured in Ringer's buffer at pH 7.2, and the response to chemically induced chloride currents was recorded in real time in hippocampal cells.
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Affiliation(s)
- Luca Baù
- Dipartimento di Scienze Chimiche, Università di Padova, via Marzolo 1, 35131 Padova, Italy
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29
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Amatori S, Ambrosi G, Fanelli M, Formica M, Fusi V, Giorgi L, Macedi E, Micheloni M, Paoli P, Pontellini R, Rossi P, Varrese MA. Multi-Use NBD-Based Tetra-amino Macrocycle: Fluorescent Probe for Metals and Anions and Live Cell Marker. Chemistry 2012; 18:4274-84. [DOI: 10.1002/chem.201103135] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2011] [Indexed: 11/08/2022]
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30
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Li P, Xie T, Fan N, Li K, Tang B. Ratiometric fluorescence imaging for distinguishing chloride concentration between normal and ischemic ventricular myocytes. Chem Commun (Camb) 2012; 48:2077-9. [DOI: 10.1039/c1cc15258k] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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31
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Ruedas-Rama MJ, Orte A, Hall EAH, Alvarez-Pez JM, Talavera EM. A chloride ion nanosensor for time-resolved fluorimetry and fluorescence lifetime imaging. Analyst 2012; 137:1500-8. [DOI: 10.1039/c2an15851e] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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32
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Liang YJ, Meng XJ, Huang FP, Guo JJ, Jiang YM. Ag(I) coordination polymer with pyrazine sulfonic acid: synthesis, crystal structure, and fluorescence property. J COORD CHEM 2011. [DOI: 10.1080/00958972.2011.630462] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
Affiliation(s)
- Yi-jun Liang
- a School of Chemistry and Chemical Engineering of Guangxi Normal University , Guilin 541004, P.R. China
| | - Xiu-jin Meng
- a School of Chemistry and Chemical Engineering of Guangxi Normal University , Guilin 541004, P.R. China
| | - Fu-ping Huang
- a School of Chemistry and Chemical Engineering of Guangxi Normal University , Guilin 541004, P.R. China
| | - Jiao-jiao Guo
- a School of Chemistry and Chemical Engineering of Guangxi Normal University , Guilin 541004, P.R. China
| | - Yi-min Jiang
- a School of Chemistry and Chemical Engineering of Guangxi Normal University , Guilin 541004, P.R. China
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33
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Hamdane D, Argentini M, Cornu D, Myllykallio H, Skouloubris S, Hui-Bon-Hoa G, Golinelli-Pimpaneau B. Insights into folate/FAD-dependent tRNA methyltransferase mechanism: role of two highly conserved cysteines in catalysis. J Biol Chem 2011; 286:36268-80. [PMID: 21846722 DOI: 10.1074/jbc.m111.256966] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
The flavoprotein TrmFO methylates specifically the C5 carbon of the highly conserved uridine 54 in tRNAs. Contrary to most methyltransferases, the 1-carbon unit transferred by TrmFO derives from 5,10-methylenetetrahydrofolate and not from S-adenosyl-L-methionine. The enzyme also employs the FAD hydroquinone as a reducing agent of the C5 methylene U54-tRNA intermediate in vitro. By analogy with the catalytic mechanism of thymidylate synthase ThyA, a conserved cysteine located near the FAD isoalloxazine ring was proposed to act as a nucleophile during catalysis. Here, we mutated this residue (Cys-53 in Bacillus subtilis TrmFO) to alanine and investigated its functional role. Biophysical characterization of this variant demonstrated the major structural role of Cys-53 in maintaining both the integrity and plasticity of the flavin binding site. Unexpectedly, gel mobility shift assays showed that, like the wild-type enzyme, the inactive C53A variant was capable of forming a covalent complex with a 5-fluorouridine-containing mini-RNA. This result confirms the existence of a covalent intermediate during catalysis but rules out a nucleophilic role for Cys-53. To identify the actual nucleophile, two other strictly conserved cysteines (Cys-192 and Cys-226) that are relatively far from the active site were replaced with alanine, and a double mutant C53A/C226A was generated. Interestingly, only mutations that target Cys-226 impeded TrmFO from forming a covalent complex and methylating tRNA. Altogether, we propose a revised mechanism for the m(5)U54 modification catalyzed by TrmFO, where Cys-226 attacks the C6 atom of the uridine, and Cys-53 plays the role of the general base abstracting the C5 proton.
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Affiliation(s)
- Djemel Hamdane
- Laboratoire d'Enzymologie et Biochimie Structurales, Centre de Recherche de Gif, CNRS, 1 Avenue de la Terrasse, 91198 Gif-sur-Yvette, France.
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34
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Jin XH, Sun JK, Cai LX, Zhang J. 2D flexible metal–organic frameworks with [Cd2(μ2-X)2](X = Cl or Br) units exhibiting selective fluorescence sensing for small molecules. Chem Commun (Camb) 2011; 47:2667-9. [DOI: 10.1039/c0cc04084c] [Citation(s) in RCA: 83] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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35
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Green Fluorescent Protein-Based Chloride Ion Sensors for In Vivo Imaging. FLUORESCENT PROTEINS II 2011. [DOI: 10.1007/4243_2011_27] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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36
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Wade CR, Broomsgrove AEJ, Aldridge S, Gabbaï FP. Fluoride ion complexation and sensing using organoboron compounds. Chem Rev 2010; 110:3958-84. [PMID: 20540560 DOI: 10.1021/cr900401a] [Citation(s) in RCA: 850] [Impact Index Per Article: 60.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Casey R Wade
- Chemistry Department, Texas A&M University, 3255 TAMU, College Station, Texas 77843-3255, USA
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Gassensmith JJ, Matthys S, Lee JJ, Wojcik A, Kamat PV, Smith BD. Squaraine rotaxane as a reversible optical chloride sensor. Chemistry 2010; 16:2916-21. [PMID: 20082394 DOI: 10.1002/chem.200902547] [Citation(s) in RCA: 116] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
A mechanically interlocked squaraine rotaxane is comprised of a deep-red fluorescent squaraine dye inside a tetralactam macrocycle. NMR studies show that Cl(-) binding to the rotaxane induces macrocycle translocation away from the central squaraine station, a process that is completely reversed when the Cl(-) is removed from the solution. Steady-state fluorescence and excited-state lifetime measurements show that this reversible machine-like motion modulates several technically useful optical properties, including a three-fold increase in deep-red fluorescence emission that is observable to the naked eye. The excited states were characterized quantitatively by time-correlated single photon counting, femtosecond transient absorption spectroscopy, and nanosecond laser flash photolysis. Cl(-) binding to the rotaxane increases the squaraine excited singlet state lifetime from 1.5 to 3.1 ns, and decreases the excited triplet state lifetime from >200 to 44 micros. Apparently, the surrounding macrocycle quenches the excited singlet state of the encapsulated squaraine dye and stabilizes the excited triplet state. Prototype dipsticks were prepared by adsorbing the lipophilic rotaxane onto the ends of narrow, C18-coated, reverse-phase silica gel plates. The fluorescence intensity of a dipstick increased eighteen-fold upon dipping in an aqueous solution of tetrabutylammonium chloride (300 mM) and was subsequently reversed by washing with pure water. It is possible to develop the dipsticks for colorimetric determination of Cl(-) levels by the naked eye. After dipping into aqueous tetrabutylammonium chloride, a dipstick's color slowly fades at a rate that depends on the amount of Cl(-) in the aqueous solution. The fading process is due primarily to hydrolytic bleaching of the squaraine chromophore within the rotaxane. That is, association of Cl(-) to immobilized rotaxane induces macrocycle translocation and exposure of the electrophilic C(4)O(2) core of the squaraine station, which is in turn attacked by the ambient moisture to produce a bleached product.
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Affiliation(s)
- Jeremiah J Gassensmith
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA
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38
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Descalzo AB, Zhu S, Fischer T, Rurack K. Optimization of the Coupling of Target Recognition and Signal Generation. ADVANCED FLUORESCENCE REPORTERS IN CHEMISTRY AND BIOLOGY II 2010. [DOI: 10.1007/978-3-642-04701-5_2] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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39
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Bregestovski P, Waseem T, Mukhtarov M. Genetically encoded optical sensors for monitoring of intracellular chloride and chloride-selective channel activity. Front Mol Neurosci 2009; 2:15. [PMID: 20057911 PMCID: PMC2802328 DOI: 10.3389/neuro.02.015.2009] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2009] [Accepted: 08/28/2009] [Indexed: 12/31/2022] Open
Abstract
This review briefly discusses the main approaches for monitoring chloride (Cl−), the most abundant physiological anion. Noninvasive monitoring of intracellular Cl− ([Cl−]i) is a challenging task owing to two main difficulties: (i) the low transmembrane ratio for Cl−, approximately 10:1; and (ii) the small driving force for Cl−, as the Cl− reversal potential (ECl) is usually close to the resting potential of the cells. Thus, for reliable monitoring of intracellular Cl−, one has to use highly sensitive probes. From several methods for intracellular Cl− analysis, genetically encoded chloride indicators represent the most promising tools. Recent achievements in the development of genetically encoded chloride probes are based on the fact that yellow fluorescent protein (YFP) exhibits Cl−-sensitivity. YFP-based probes have been successfully used for quantitative analysis of Cl− transport in different cells and for high-throughput screening of modulators of Cl−-selective channels. Development of a ratiometric genetically encoded probe, Clomeleon, has provided a tool for noninvasive estimation of intracellular Cl− concentrations. While the sensitivity of this protein to Cl− is low (EC50 about 160 mM), it has been successfully used for monitoring intracellular Cl− in different cell types. Recently a CFP–YFP-based probe with a relatively high sensitivity to Cl− (EC50 about 30 mM) has been developed. This construct, termed Cl-Sensor, allows ratiometric monitoring using the fluorescence excitation ratio. Of particular interest are genetically encoded probes for monitoring of ion channel distribution and activity. A new molecular probe has been constructed by introducing into the cytoplasmic domain of the Cl−-selective glycine receptor (GlyR) channel the CFP–YFP-based Cl-Sensor. This construct, termed BioSensor-GlyR, has been successfully expressed in cell lines. The new genetically encoded chloride probes offer means of screening pharmacological agents, analysis of Cl− homeostasis and functions of Cl−-selective channels under different physiological and pathological conditions.
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40
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Gawęda S, Morán MC, Pais AA, Dias RS, Schillén K, Lindman B, Miguel MG. Cationic agents for DNA compaction. J Colloid Interface Sci 2008; 323:75-83. [DOI: 10.1016/j.jcis.2008.04.006] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2008] [Revised: 04/02/2008] [Accepted: 04/04/2008] [Indexed: 11/16/2022]
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Lin C, Simov V, Drueckhammer DG. Interaction of Halide and Carboxylate Ions with 4,5-Diacetamidoacridine-9(10H)-one: Thermodynamics of Association and Deprotonation Events. J Org Chem 2007; 72:1742-6. [PMID: 17286443 DOI: 10.1021/jo062467j] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
4,5-Diacetamidoacridine-9(10H)-one was prepared, and its interactions with halide and benzoate anions were studied using a combination of NMR, fluorescence, and isothermal titration calorimetry experiments. Whereas chloride and bromide exhibited simple association, both fluoride and benzoate exhibited initial entropy-driven association followed by an enthalpically favorable deprotonation of the receptor by a second equivalent of the anion.
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Affiliation(s)
- Chen Lin
- Department of Chemistry, Stony Brook University, Stony Brook, NY 11794, USA
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42
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Gill S, Gill R, Xie Y, Wicks D, Liang D. Development and Validation of HTS Flux Assay for Endogenously Expressed Chloride Channels in a CHO-K1 Cell Line. Assay Drug Dev Technol 2006; 4:65-71. [PMID: 16506890 DOI: 10.1089/adt.2006.4.65] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
An atomic absorption spectroscopy-based detection system was employed to develop a new non-radioactive flux assay for chloride (Cl-) channels in a high throughput format. Cl- flux is assayed by measuring the extent to which Cl- precipitates an excess amount of silver ions (Ag+). A linear correlation was observed between theoretical and determined Cl- concentration with an r2 value of 0.996. The assay was found to be free from interference from various ions and proteins. The assay was used to study the physiology of endogenously expressed Cl- channels in a Chinese hamster ovary-K1 cell line. Cl- efflux was activated in response to an increased concentration of K+ (100 mM), Ca2+ (4 mM), and ionomycin (10 microM) as calcium ionophore. The efflux was also sensitive to pH as slightly higher efflux of Cl- was observed at an acidic pH of 3.2 in comparison to the neutral pH of 7.4. The Cl- efflux was inhibited by 100 microM 4,4'-diisothiocyanostilbene-2,2'-disulfonic acid (DIDS) and 500 microM 5-nitro-2-(3-phenylpropylamino) benzoate (NPPB) but not by tolbutamide, niflumic acid, or glybenclamide, indicating that the channel current is not sensitive to other cystic fibrosis transmembrane conductance regulator inhibitors. The 50% inhibitory concentration (IC50) values of DIDS at pH 7.4 and pH 3.2 were 17 microM and 19 microM, respectively. An IC50 of 26 microM was observed for NPPB. The assay had a Z' factor of 0.678.
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43
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Badugu R, Lakowicz JR, Geddes CD. Enhanced fluorescence cyanide detection at physiologically lethal levels: reduced ICT-based signal transduction. J Am Chem Soc 2005; 127:3635-41. [PMID: 15755185 PMCID: PMC6844257 DOI: 10.1021/ja044421i] [Citation(s) in RCA: 362] [Impact Index Per Article: 19.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Three water-soluble fluorescent probes have been specifically designed to determine free cyanide concentrations up to physiologically lethal levels, >20 microM. The probes have been designed in such a way as to afford many notable sensing features, which render them unique with regard to signal transduction, photophysical characteristics, and their application to physiological cyanide determination and safeguard. The probes are readily able to reversibly bind free aqueous cyanide with dissociation constants around 4 microM3. Subsequent cyanide binding modulates the intramolecular charge transfer within the probes, a change in the electronic properties within the probes, resulting in enhanced fluorescence optical signals as a function of increased solution cyanide concentration. The ground-state chelation with cyanide produces wavelength shifts, which also enable the probes to sense cyanide in both an excitation and emission ratiometric manner, in addition to enhanced fluorescence signaling. This has enabled a generic cyanide sensing platform to be realized that is not dependent on fluorescent probe concentration, probe photodegradation, or fluctuations in the intensity of any employed excitation sources, ideal for remote cyanide sensing applications. Further, the >600 nm fluorescence emission of the probes potentially allows for enhanced fluorescence ratiometric cyanide sensing in the optical window of tissues and blood, facilitating their use for the transdermal monitoring of cyanide for mammalian safeguard or postmortem in fire victims, both areas of active research.
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Affiliation(s)
- Ramachandram Badugu
- Center for Fluorescence Spectroscopy, Department of Biochemistry and Molecular Biology, University of Maryland School of Medicine, 725 West Lombard Street, Baltimore, Maryland 21201, USA
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McNally BA, Koulov AV, Smith BD, Joos JB, Davis AP. A fluorescent assay for chloride transport; identification of a synthetic anionophore with improved activity. Chem Commun (Camb) 2005:1087-9. [PMID: 15719125 DOI: 10.1039/b414589e] [Citation(s) in RCA: 165] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A fluorescent assay based on the chloride-sensitive probe, lucigenin, is developed for monitoring chloride transport into vesicles, and used to compare the effectiveness of three steroid-derived transporters.
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Affiliation(s)
- Beth A McNally
- Department of Chemistry and Biochemistry, University of Notre Dame, IN 46556, USA
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45
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Jörg G, Bertau M. Thiol-tolerant assay for quantitative colorimetric determination of chloride released from whole-cell biodehalogenations. Anal Biochem 2004; 328:22-8. [PMID: 15081903 DOI: 10.1016/j.ab.2004.01.027] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2003] [Indexed: 10/26/2022]
Abstract
Determination of inorganic chloride released from a chloro-organic compound by whole-cell or enzymatic dehalogenation can be affected by free thiols, phosphate, sugars, pH, the chloro-organic substrate, and its dehalogenation product. For these reasons a highly sensitive, colorimetric chloride assay on the basis of [FeCl]2+ (lambda(max) = 340 nm) formed in highly acidic medium which is insensitive to composition of culture medium, free thiols, substrate, and dehalogenation product was developed. It is applicable to both fungal and bacterial high-cell-density cultures. The [FeCl]2+ method provides reliable data and is convenient for the rapid and facile determination of dehalogenation kinetics.
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Affiliation(s)
- Gerhard Jörg
- Institute of Biochemistry, Dresden University of Technology, D-01062 Dresden, Germany
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46
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Badugu R, Lakowicz JR, Geddes CD. Wavelength-ratiometric probes for the selective detection of fluoride based on the 6-aminoquinolinium nucleus and boronic acid moiety. J Fluoresc 2004; 14:693-703. [PMID: 15649021 PMCID: PMC6855386 DOI: 10.1023/b:jofl.0000047219.55339.9a] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Herein we report a set of new water-soluble fluorescent probes (N-boronobenzyl-6-aminoquinolinium bromides, BAQBAs) sensitive to aqueous fluoride. These probes shows spectral shifts and intensity changes in the presence of fluoride, in a wavelength ratiometric and colorimetric manner, enabling the detection of fluoride concentrations at visible wavelengths, in the concentration range approximately 1-300 mM. Although the sensing mechanism is different for fluoride as compared to the other halides, we have tested the utility of these probes towards the other halides, and the results reveal that the BAQBAs are in fact potential candidates towards the sensing of the all the halides, but in different concentration ranges. As the probes are based on the boronic acid moiety, which is a well-known fluoride and sugar chelator group, we have investigated the response of sugars (such as glucose and fructose, which are present in biological fluids and foodstuffs) as interferences in fluoride detection using these probes. Interestingly, the BAQBAs show a suppressed sugar response potentially allowing for the predominant fluoride sensitivity. In addition to physiological sugars, we also have assessed the response of aqueous halides as potential interferents, or indeed analytes to be sensed, and show that the new boronic acid containing probes respond well to aqueous fluoride in the presence of a high background of other species, such as in a biological cocktail of 50 mM Glucose, 50 mM aqueous Chloride and 5 mM Fructose.
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Affiliation(s)
- Ramachandram Badugu
- Center for Fluorescence Spectroscopy, Department of Biochemistry and Molecular Biology, Medical Biotechnology Center, University of Maryland School of Medicine, Baltimore, Maryland
| | - Joseph R. Lakowicz
- Center for Fluorescence Spectroscopy, Department of Biochemistry and Molecular Biology, Medical Biotechnology Center, University of Maryland School of Medicine, Baltimore, Maryland
| | - Chris D. Geddes
- Center for Fluorescence Spectroscopy, Department of Biochemistry and Molecular Biology, Medical Biotechnology Center, University of Maryland School of Medicine, Baltimore, Maryland
- Institute of Fluorescence, Medical Biotechnology Center, University of Maryland Biotechnology Institute, Baltimore, Maryland
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Badugu R, Lakowicz JR, Geddes CD. Excitation and emission wavelength ratiometric cyanide-sensitive probes for physiological sensing. Anal Biochem 2004; 327:82-90. [PMID: 15033514 PMCID: PMC6857806 DOI: 10.1016/j.ab.2003.12.026] [Citation(s) in RCA: 73] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2003] [Indexed: 10/26/2022]
Abstract
We characterize three new fluorescent probes that show both spectral shifts and intensity changes in the presence of aqueous cyanide, allowing for both excitation and fluorescence emission wavelength ratiometric and colorimetric sensing. The relatively high binding constants of the probes for cyanide enables a distinct colorimetric change to be visually observed with as little as 10 microM cyanide. The response of the new probes is based on the ability of the boronic acid group to interact with the CN(-) anion, changing from the neutral form of the boronic acid group R-B(OH)(2) to the anionic R-B(-)(OH)3 form, which is an electron-donating group. The presence of an electron-deficient quaternary heterocyclic nitrogen center and a strong electron-donating amino group in the 6 position on the quinolinium backbone provides for the spectral changes observed upon CN(-) complexation. We have determined the binding constants for the ortho-, meta-, and para-boronic acid probes to be 0.12, 0.17, and 0.14 microM(-3). In addition we have synthesized a control compound that does not contain the boronic acid moiety, allowing for structural comparisons and a rationale for the sensing mechanism to be made. Finally we show that the affinity for monosaccharides, such as glucose or fructose, is relatively low as compared to that for cyanide, enabling the potential detection of cyanide in physiologies up to lethal levels.
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Affiliation(s)
- Ramachandram Badugu
- Center for Fluorescence Spectroscopy, Department of Biochemistry and Molecular Biology, Medical Biotechnology Center, University of Maryland School of Medicine, 725 West Lombard St., Baltimore, MD 21201, USA
| | - Joseph R. Lakowicz
- Center for Fluorescence Spectroscopy, Department of Biochemistry and Molecular Biology, Medical Biotechnology Center, University of Maryland School of Medicine, 725 West Lombard St., Baltimore, MD 21201, USA
| | - Chris D. Geddes
- Center for Fluorescence Spectroscopy, Department of Biochemistry and Molecular Biology, Medical Biotechnology Center, University of Maryland School of Medicine, 725 West Lombard St., Baltimore, MD 21201, USA
- Institute of Fluorescence and Center for Fluorescence Spectroscopy, Medical Biotechnology Center, University of Maryland Biotechnology Institute, 725 West Lombard St., Baltimore, MD 21201, USA
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Mehata M, Joshi H, Tripathi H. Excited-state intermolecular proton transfer reaction of 6-hydroxyquinoline in protic polar medium. Chem Phys Lett 2002. [DOI: 10.1016/s0009-2614(02)00716-9] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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