Covalent DNA immobilization on polymer-shielded silver-coated quartz crystal microbalance using photobiotin-based UV irradiation

Chromium(VI) but not chromium(III) species decrease mitoxantrone affinity to DNA

Binding of mitoxantrone (MXT) to double-stranded DNA has been investigated as a model drug-DNA binding system to evaluate the effects of various forms of chromium on the binding properties. We have found that Cr(III), which binds strongly to DNA, does not affect the MXT affinity to DNA. In contrast, Cr(VI), in the form of chromate ions CrO(4)(2-), decreases the MXT affinity to DNA despite electrostatic repulsions with phosphate-deoxyribose chains of DNA. The MXT-DNA binding constant was found to decrease from (1.96 ± 0.005) × 10(5) to (0.77 ± 0.018) × 10(5) M(-1) for Cr(VI) concentration changing from 0 to 30 μM. The influence of Cr(VI) on MXT-DNA binding has been attributed to the oxidation of guanine residue, thus interrupting the intercalation of MXT into the DNA double helix at the preferential CpG intercalation site. This supposition is corroborated by the observed increase in the MXT binding site size from 2 bp (base pairs) to 4-6 bp in the presence of Cr(VI). The measurements of the MXT-DNA binding constant and the MXT binding site size on a DNA molecule have been carried out using spectroscopic, voltammetric, and nanogravimetric techniques, providing useful information on the mechanism of the interactions.

QCM sensors for aqueous phenols based on active layers constituted by tetrapyrrolic macrocycle Langmuir films

Three different metalated tetrapyrrolic macrocycles have been transferred by Langmuir-Blodgett technique directly onto piezoelectric quartz crystal covered with gold electrodes of a commercial quartz crystal microbalance instrument in order to perform a flow injection analysis. All floating films at the air-water interface have been analyzed by registration of Langmuir curves and by UV-vis reflection spectroscopy and brewster angle microscopy. The sensing performances of the modified gold electrodes were investigated by monitoring the frequency variation induced by the presence of several toxic phenols. The explored concentrations ranged around 10-3 M and the corresponding frequency variations ranged between 10 and 200 Hz. All responses observed were fast, reproducible and reversible; moreover, the active layers are stable over long periods of utilization. The observation that interferences from fulvic acid are absolutely negligible is also noteworthy. The responses are not selective for each singular phenol derivative; notwithstanding this, to the best of our knowledge, this contribution represents one of the first examples of sensing layers for the monitoring of the total content of phenols.

A survey of the 2001 to 2005 quartz crystal microbalance biosensor literature: applications of acoustic physics to the analysis of biomolecular interactions

The widespread exploitation of biosensors in the analysis of molecular recognition has its origins in the mid-1990s following the release of commercial systems based on surface plasmon resonance (SPR). More recently, platforms based on piezoelectric acoustic sensors (principally 'bulk acoustic wave' (BAW), 'thickness shear mode' (TSM) sensors or 'quartz crystal microbalances' (QCM)), have been released that are driving the publication of a large number of papers analysing binding specificities, affinities, kinetics and conformational changes associated with a molecular recognition event. This article highlights salient theoretical and practical aspects of the technologies that underpin acoustic analysis, then reviews exemplary papers in key application areas involving small molecular weight ligands, carbohydrates, proteins, nucleic acids, viruses, bacteria, cells and lipidic and polymeric interfaces. Key differentiators between optical and acoustic sensing modalities are also reviewed.

Layer guided-acoustic plate mode biosensors for monitoring MHC–peptide interactions

The transduction signals from the immobilisation of a class I heavy chain, HLA-A2, on a layer guided acoustic plate mode device, followed by binding of beta(2)-microglobulin and subsequent selective binding of a target peptide are reported.

Micropatterning of biomolecules on glass surfaces modified with various functional groups using photoactivatable biotin

Biomolecule patterning by photolithographic methods has considerable advantages because a large number of different biomolecules can be assembled on a spatial area by a combinatorial method and complex biomolecule patterning can be created in situ in closed environments such as microfluidic channels. Here, a photobiotin was used as the photoactivatable reagent to create patterned arrays of biomolecules. The variability of photobiotin deposition on glass substrates modified with a variety of materials having carboxyl, lysine, aldehyde, amine groups, and BSA (bovine serum albumin) was characterized by subsequent derivatization with Cy3-labeled streptavidin. The fluorescence images of the photobiotin patterned glass surfaces showed that the BSA/aldehyde-coated glass could be considered as the most appropriate substrate to immobilize photobiotin, in view of the homogeneous immobilization of biomolecules with high density in defined regions and the reduction of nonspecific binding to the surface. In streptavidin equilibrium adsorption assays, the maximum amount of streptavidin-Cy3 bound to the BSA/aldehyde-coated glass surface continued to rise with increasing streptavidin-Cy3 concentration until 12.0 microg/mL was reached and the surface then became saturated. Also, a line array of biotin-labeled single-strand probe DNAs was created on the BSA/aldehyde-coated glass by photolysis of photobiotin through a slit-type mask and biotin/streptavidin/biotin chemistry, extended to a quantitative measurement of the concentrations of target DNA. The results of target DNA analysis showed linearity over a wide range from 0.5 ng/mL to 5 microg/mL and were reproducible.

Unique supramolecular assembly of a redox protein with nucleic acids onto hybrid bilayer: towards a dynamic DNA chip

Highly controlled supramolecular assemblies combining a genetically engineered redox protein, cytochrome b5, and modified oligonucleotides are presented. Modified b5 and DNA are covalently assembled through a hetero bifunctional cross-linker to give a unique hybrid molecular species. Moreover, the assembly includes a histidine tag head able to bind to modified phospholipids which lead to a new generation of self-assembled dynamic DNA chips. The interaction of the construction with a complementary oligonucleotide sequence can be monitored in real time by surface plasmon resonance using Biacore technology. The biochip, presented herein, features unique properties including tunable surface density of probes, very low non-specific interactions and optimization of hybridization efficiency. In addition, we demonstrated that the phase transition of the lipidic layer can modulate the dynamic of the association of the complex to the supported membrane. Potential applications of this new device are multiple including high sensitivity and high selectivity biochips, especially for studies of the DNA-ligands interactions in a biomimetic environment.

Piezoelectric sensor functionalised by a self-assembled bipyridinium derivative: characterisation and preliminary applications in the detection of heavy metal ions

The synthesis of a molecule, 1-(11-dodecylsulfanyl-undecyl)-[4,4']bipyridinium bromide (1), suitable at the same time to form a covalent bond with gold electrodes of a piezoelectric quartz crystal and to interact with heavy metal ions in aqueous solutions, has been successfully accomplished. A commercial quartz crystal microbalance instrument has been modified in order to perform a Flow-Injection Analysis. The behaviour of the system follows the Kanazawa-Gordon equation as demonstrated by measurements with glucose solutions. The self-assembled layer of 1 onto a gold electrode has been characterised by Atomic Force Microscopy before and after the sensing tests. The sensing performances of the modified gold electrode were investigated by monitoring the frequency variation induced by the presence of heavy metal ions, such as lead, cadmium and mercury, in aqueous media. The explored concentrations ranged between 10(-4) and 10(-2) M and the corresponding frequency variations ranged between 10 and 50 Hz. All responses observed were fast, reproducible and reversible. In particular, the response to mercury appears significantly higher in comparison with the other analytes. To the best of our knowledge, this contribution represents the first example of sensing layer based on bipyridinium receptor showing reversible and, at some extent, differentiated response towards heavy metal ions.