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For: Crowder S, Holton J, Alber T. Covariance analysis of RNA recognition motifs identifies functionally linked amino acids. J Mol Biol 2001;310:793-800. [PMID: 11453688 DOI: 10.1006/jmbi.2001.4740] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Number Cited by Other Article(s)
1
Feher VA, Randall A, Baldi P, Bush RM, de la Maza LM, Amaro RE. A 3-dimensional trimeric β-barrel model for Chlamydia MOMP contains conserved and novel elements of Gram-negative bacterial porins. PLoS One 2013;8:e68934. [PMID: 23935908 PMCID: PMC3723809 DOI: 10.1371/journal.pone.0068934] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2013] [Accepted: 06/04/2013] [Indexed: 01/17/2023]  Open
2
Hu J, Wang C. Molecular Dynamics Simulation of HIV-1 Integrase Dimer Complexed with Viral DNA. CHINESE J CHEM 2010. [DOI: 10.1002/cjoc.201090032] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
3
Kormos BL, Baranger AM, Beveridge DL. Do collective atomic fluctuations account for cooperative effects? Molecular dynamics studies of the U1A-RNA complex. J Am Chem Soc 2007;128:8992-3. [PMID: 16834346 PMCID: PMC2603296 DOI: 10.1021/ja0606071] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
4
Kormos BL, Baranger AM, Beveridge DL. A study of collective atomic fluctuations and cooperativity in the U1A-RNA complex based on molecular dynamics simulations. J Struct Biol 2006;157:500-13. [PMID: 17194603 PMCID: PMC1994251 DOI: 10.1016/j.jsb.2006.10.022] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2006] [Revised: 10/02/2006] [Accepted: 10/04/2006] [Indexed: 11/21/2022]
5
On tests of independence based on minimum -divergence estimator with constraints: An application to modeling DNA. Comput Stat Data Anal 2006. [DOI: 10.1016/j.csda.2005.11.006] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
6
Dobson N, Dantas G, Baker D, Varani G. High-resolution structural validation of the computational redesign of human U1A protein. Structure 2006;14:847-56. [PMID: 16698546 DOI: 10.1016/j.str.2006.02.011] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2005] [Revised: 12/22/2005] [Accepted: 02/21/2006] [Indexed: 10/24/2022]
7
Perry WL, Shepard RL, Sampath J, Yaden B, Chin WW, Iversen PW, Jin S, Lesoon A, O'Brien KA, Peek VL, Rolfe M, Shyjan A, Tighe M, Williamson M, Krishnan V, Moore RE, Dantzig AH. Human splicing factor SPF45 (RBM17) confers broad multidrug resistance to anticancer drugs when overexpressed--a phenotype partially reversed by selective estrogen receptor modulators. Cancer Res 2005;65:6593-600. [PMID: 16061639 DOI: 10.1158/0008-5472.can-03-3675] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
8
Govindarajan S, Ness JE, Kim S, Mundorff EC, Minshull J, Gustafsson C. Systematic variation of amino acid substitutions for stringent assessment of pairwise covariation. J Mol Biol 2003;328:1061-9. [PMID: 12729741 DOI: 10.1016/s0022-2836(03)00357-7] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
9
Barrick JE, Roberts RW. Sequence analysis of an artificial family of RNA-binding peptides. Protein Sci 2002;11:2688-96. [PMID: 12381850 PMCID: PMC2373718 DOI: 10.1110/ps.0208902] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
10
Robertson AD. Intramolecular interactions at protein surfaces and their impact on protein function. Trends Biochem Sci 2002;27:521-6. [PMID: 12368088 DOI: 10.1016/s0968-0004(02)02184-9] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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