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For: Zhu J, Penczek PA, Schröder R, Frank J. Three-dimensional reconstruction with contrast transfer function correction from energy-filtered cryoelectron micrographs: procedure and application to the 70S Escherichia coli ribosome. J Struct Biol 1997;118:197-219. [PMID: 9169230 DOI: 10.1006/jsbi.1997.3845] [Citation(s) in RCA: 130] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Number Cited by Other Article(s)
1
Zhu X, Mao Y, Liu J, Chen Y, Chen C, Li Y, Huang X, Gu N. Deep learning-assisted analysis of HRTEM images of crystalline nanoparticles. NANOSCALE 2023;15:14496-14504. [PMID: 37609765 DOI: 10.1039/d3nr03061j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/24/2023]
2
Harrison PJ, Vecerkova T, Clare DK, Quigley A. A review of the approaches used to solve sub-100 kDa membrane proteins by cryo-electron microscopy. J Struct Biol 2023;215:107959. [PMID: 37004781 DOI: 10.1016/j.jsb.2023.107959] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 03/07/2023] [Accepted: 03/28/2023] [Indexed: 04/03/2023]
3
Du DX, Fitzpatrick AW. Design of an ultrafast pulsed ponderomotive phase plate for cryo-electron tomography. CELL REPORTS METHODS 2023;3:100387. [PMID: 36814846 PMCID: PMC9939428 DOI: 10.1016/j.crmeth.2022.100387] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Revised: 09/09/2022] [Accepted: 12/20/2022] [Indexed: 01/15/2023]
4
Chung JM, Durie CL, Lee J. Artificial Intelligence in Cryo-Electron Microscopy. Life (Basel) 2022;12:1267. [PMID: 36013446 PMCID: PMC9410485 DOI: 10.3390/life12081267] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Revised: 08/15/2022] [Accepted: 08/18/2022] [Indexed: 11/17/2022]  Open
5
Xiang Y, Surovtsev IV, Chang Y, Govers SK, Parry BR, Liu J, Jacobs-Wagner C. Interconnecting solvent quality, transcription, and chromosome folding in Escherichia coli. Cell 2021;184:3626-3642.e14. [PMID: 34186018 DOI: 10.1016/j.cell.2021.05.037] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Revised: 12/09/2020] [Accepted: 05/25/2021] [Indexed: 12/12/2022]
6
Lei H, Yang Y. CDAE: A Cascade of Denoising Autoencoders for Noise Reduction in the Clustering of Single-Particle Cryo-EM Images. Front Genet 2021;11:627746. [PMID: 33552141 PMCID: PMC7854571 DOI: 10.3389/fgene.2020.627746] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Accepted: 12/21/2020] [Indexed: 11/16/2022]  Open
7
Penczek PA. Reliable cryo-EM resolution estimation with modified Fourier shell correlation. IUCRJ 2020;7:995-1008. [PMID: 33209314 PMCID: PMC7642792 DOI: 10.1107/s2052252520011574] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Accepted: 08/24/2020] [Indexed: 06/11/2023]
8
Heimowitz A, Andén J, Singer A. Reducing bias and variance for CTF estimation in single particle cryo-EM. Ultramicroscopy 2020;212:112950. [PMID: 32151795 PMCID: PMC9930185 DOI: 10.1016/j.ultramic.2020.112950] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2019] [Revised: 01/17/2020] [Accepted: 01/26/2020] [Indexed: 10/25/2022]
9
The ETFL formulation allows multi-omics integration in thermodynamics-compliant metabolism and expression models. Nat Commun 2020;11:30. [PMID: 31937763 PMCID: PMC6959363 DOI: 10.1038/s41467-019-13818-7] [Citation(s) in RCA: 48] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Accepted: 11/28/2019] [Indexed: 11/09/2022]  Open
10
Wilkinson ME, Kumar A, Casañal A. Methods for merging data sets in electron cryo-microscopy. Acta Crystallogr D Struct Biol 2019;75:782-791. [PMID: 31478901 PMCID: PMC6719665 DOI: 10.1107/s2059798319010519] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2019] [Accepted: 07/23/2019] [Indexed: 11/26/2022]  Open
11
Kempes CP, Koehl MAR, West GB. The Scales That Limit: The Physical Boundaries of Evolution. Front Ecol Evol 2019. [DOI: 10.3389/fevo.2019.00242] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
12
Li W, Agrawal RK. Joachim Frank's Binding with the Ribosome. Structure 2019;27:411-419. [PMID: 30595455 PMCID: PMC11062599 DOI: 10.1016/j.str.2018.11.006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2018] [Revised: 11/09/2018] [Accepted: 11/15/2018] [Indexed: 01/03/2023]
13
Donati L, Nilchian M, Sorzano COS, Unser M. Fast multiscale reconstruction for Cryo-EM. J Struct Biol 2018;204:543-554. [PMID: 30261282 PMCID: PMC7343242 DOI: 10.1016/j.jsb.2018.09.008] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2018] [Revised: 09/13/2018] [Accepted: 09/20/2018] [Indexed: 12/01/2022]
14
Frank J. Einzelpartikel-Rekonstruktion biologischer Moleküle - Geschichte in einer Probe (Nobel-Aufsatz). Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201802770] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
15
Frank J. Single-Particle Reconstruction of Biological Molecules-Story in a Sample (Nobel Lecture). Angew Chem Int Ed Engl 2018;57:10826-10841. [PMID: 29978534 DOI: 10.1002/anie.201802770] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2018] [Indexed: 12/24/2022]
16
Yan R, Li K, Jiang W. Defocus and magnification dependent variation of TEM image astigmatism. Sci Rep 2018;8:344. [PMID: 29321616 PMCID: PMC5762780 DOI: 10.1038/s41598-017-18820-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2017] [Accepted: 12/18/2017] [Indexed: 11/09/2022]  Open
17
Heymann JB. Guidelines for using Bsoft for high resolution reconstruction and validation of biomolecular structures from electron micrographs. Protein Sci 2017;27:159-171. [PMID: 28891250 DOI: 10.1002/pro.3293] [Citation(s) in RCA: 76] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2017] [Revised: 09/05/2017] [Accepted: 09/06/2017] [Indexed: 12/12/2022]
18
A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy. BIOMED RESEARCH INTERNATIONAL 2017;2017:6482567. [PMID: 29312997 PMCID: PMC5623807 DOI: 10.1155/2017/6482567] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 09/16/2016] [Accepted: 03/09/2017] [Indexed: 11/18/2022]
19
Sheng H, Stauffer WT, Hussein R, Lin C, Lim HN. Nucleoid and cytoplasmic localization of small RNAs in Escherichia coli. Nucleic Acids Res 2017;45:2919-2934. [PMID: 28119418 PMCID: PMC5389542 DOI: 10.1093/nar/gkx023] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2016] [Accepted: 01/09/2017] [Indexed: 12/23/2022]  Open
20
Galaz-Montoya JG, Ludtke SJ. The advent of structural biology in situ by single particle cryo-electron tomography. BIOPHYSICS REPORTS 2017;3:17-35. [PMID: 28781998 PMCID: PMC5516000 DOI: 10.1007/s41048-017-0040-0] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2017] [Accepted: 03/30/2017] [Indexed: 01/06/2023]  Open
21
Halter W, Montenbruck JM, Tuza ZA, Allgöwer F. A resource dependent protein synthesis model for evaluating synthetic circuits. J Theor Biol 2017;420:267-278. [PMID: 28286216 DOI: 10.1016/j.jtbi.2017.03.004] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2016] [Revised: 02/06/2017] [Accepted: 03/07/2017] [Indexed: 11/26/2022]
22
Yan R, Li K, Jiang W. Real-time detection and single-pass minimization of TEM objective lens astigmatism. J Struct Biol 2016;197:210-219. [PMID: 27838367 DOI: 10.1016/j.jsb.2016.11.001] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2016] [Revised: 10/29/2016] [Accepted: 11/04/2016] [Indexed: 11/28/2022]
23
Kramberger C, Meyer J. Progress in structure recovery from low dose exposures: Mixed molecular adsorption, exploitation of symmetry and reconstruction from the minimum signal level. Ultramicroscopy 2016;170:60-68. [DOI: 10.1016/j.ultramic.2016.08.009] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2016] [Revised: 08/03/2016] [Accepted: 08/05/2016] [Indexed: 11/25/2022]
24
Samsó M. A guide to the 3D structure of the ryanodine receptor type 1 by cryoEM. Protein Sci 2016;26:52-68. [PMID: 27671094 DOI: 10.1002/pro.3052] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2016] [Revised: 09/21/2016] [Accepted: 09/22/2016] [Indexed: 01/04/2023]
25
Cheng Y, Grigorieff N, Penczek PA, Walz T. A primer to single-particle cryo-electron microscopy. Cell 2015;161:438-449. [PMID: 25910204 DOI: 10.1016/j.cell.2015.03.050] [Citation(s) in RCA: 351] [Impact Index Per Article: 39.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2014] [Indexed: 01/14/2023]
26
Cabra V, Samsó M. Do's and don'ts of cryo-electron microscopy: a primer on sample preparation and high quality data collection for macromolecular 3D reconstruction. J Vis Exp 2015:52311. [PMID: 25651412 PMCID: PMC4354528 DOI: 10.3791/52311] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]  Open
27
Zhao Z, Singer A. Rotationally invariant image representation for viewing direction classification in cryo-EM. J Struct Biol 2014;186:153-66. [PMID: 24631969 DOI: 10.1016/j.jsb.2014.03.003] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2013] [Revised: 03/01/2014] [Accepted: 03/02/2014] [Indexed: 10/25/2022]
28
Penczek PA, Fang J, Li X, Cheng Y, Loerke J, Spahn CMT. CTER-rapid estimation of CTF parameters with error assessment. Ultramicroscopy 2014;140:9-19. [PMID: 24562077 DOI: 10.1016/j.ultramic.2014.01.009] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2013] [Revised: 01/22/2014] [Accepted: 01/27/2014] [Indexed: 10/25/2022]
29
Li F, Harry EJ, Bottomley AL, Edstein MD, Birrell GW, Woodward CE, Keene FR, Collins JG. Dinuclear ruthenium(ii) antimicrobial agents that selectively target polysomes in vivo. Chem Sci 2014. [DOI: 10.1039/c3sc52166d] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]  Open
30
Caniparoli L, Lombardo P. Nonequilibrium stochastic model for tRNA binding time statistics. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014;89:012712. [PMID: 24580262 DOI: 10.1103/physreve.89.012712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2013] [Indexed: 06/03/2023]
31
Meyer JC, Kotakoski J, Mangler C. Atomic structure from large-area, low-dose exposures of materials: a new route to circumvent radiation damage. Ultramicroscopy 2013;145:13-21. [PMID: 24315660 PMCID: PMC4153813 DOI: 10.1016/j.ultramic.2013.11.010] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2013] [Revised: 11/21/2013] [Accepted: 11/21/2013] [Indexed: 11/18/2022]
32
Georges AD, Hashem Y, Buss SN, Jossinet F, Zhang Q, Liao HY, Fu J, Jobe A, Grassucci RA, Langlois R, Bajaj C, Westhof E, Madison-Antenucci S, Frank J. High-resolution Cryo-EM Structure of the Trypanosoma brucei Ribosome: A Case Study. ACTA ACUST UNITED AC 2013. [DOI: 10.1007/978-1-4614-9521-5_5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2023]
33
Jeong HS, Park HN, Kim JG, Hyun JK. Critical importance of the correction of contrast transfer function for transmission electron microscopy-mediated structural biology. J Anal Sci Technol 2013. [DOI: 10.1186/2093-3371-4-14] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]  Open
34
Moriya T, Mio K, Sato C. Novel convergence-oriented approach for evaluation and optimization of workflow in single-particle two-dimensional averaging of electron microscope images. Microscopy (Oxf) 2013;62:491-513. [PMID: 23625506 DOI: 10.1093/jmicro/dft026] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
35
Vulović M, Franken E, Ravelli RB, van Vliet LJ, Rieger B. Precise and unbiased estimation of astigmatism and defocus in transmission electron microscopy. Ultramicroscopy 2012. [DOI: 10.1016/j.ultramic.2012.03.004] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
36
Karimi Nejadasl F, Karuppasamy M, Koster AJ, Ravelli RBG. Defocus estimation from stroboscopic cryo-electron microscopy data. Ultramicroscopy 2011;111:1592-8. [PMID: 21945999 DOI: 10.1016/j.ultramic.2011.08.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2011] [Revised: 06/09/2011] [Accepted: 08/18/2011] [Indexed: 11/25/2022]
37
Miller JL, Woodward J, Chen S, Jaffer M, Weber B, Nagasaki K, Tomaru Y, Wepf R, Roseman A, Varsani A, Sewell T. Three-dimensional reconstruction of Heterocapsa circularisquama RNA virus by electron cryo-microscopy. J Gen Virol 2011;92:1960-1970. [PMID: 21562120 DOI: 10.1099/vir.0.031211-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]  Open
38
Voortman LM, Stallinga S, Schoenmakers RHM, van Vliet LJ, Rieger B. A fast algorithm for computing and correcting the CTF for tilted, thick specimens in TEM. Ultramicroscopy 2011;111:1029-36. [PMID: 21740865 DOI: 10.1016/j.ultramic.2011.03.001] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2010] [Revised: 12/15/2010] [Accepted: 03/01/2011] [Indexed: 10/18/2022]
39
Vendeville A, Larivière D, Fourmentin E. An inventory of the bacterial macromolecular components and their spatial organization. FEMS Microbiol Rev 2011;35:395-414. [DOI: 10.1111/j.1574-6976.2010.00254.x] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]  Open
40
Tuller T, Carmi A, Vestsigian K, Navon S, Dorfan Y, Zaborske J, Pan T, Dahan O, Furman I, Pilpel Y. An evolutionarily conserved mechanism for controlling the efficiency of protein translation. Cell 2010;141:344-54. [PMID: 20403328 DOI: 10.1016/j.cell.2010.03.031] [Citation(s) in RCA: 596] [Impact Index Per Article: 42.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2009] [Revised: 12/08/2009] [Accepted: 03/19/2010] [Indexed: 11/29/2022]
41
Jiang L, Liu Z, Georgieva D, Kuil ME, Abrahams JP. A novel approximation method of CTF amplitude correction for 3D single particle reconstruction. Ultramicroscopy 2010;110:350-8. [PMID: 20163916 DOI: 10.1016/j.ultramic.2010.01.011] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2009] [Revised: 11/23/2009] [Accepted: 01/19/2010] [Indexed: 11/27/2022]
42
Penczek PA. Fundamentals of three-dimensional reconstruction from projections. Methods Enzymol 2010;482:1-33. [PMID: 20888956 PMCID: PMC3165033 DOI: 10.1016/s0076-6879(10)82001-4] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
43
Penczek PA. Image restoration in cryo-electron microscopy. Methods Enzymol 2010;482:35-72. [PMID: 20888957 PMCID: PMC3166661 DOI: 10.1016/s0076-6879(10)82002-6] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
44
Xiong Q, Morphew MK, Schwartz CL, Hoenger AH, Mastronarde DN. CTF determination and correction for low dose tomographic tilt series. J Struct Biol 2009;168:378-87. [PMID: 19732834 DOI: 10.1016/j.jsb.2009.08.016] [Citation(s) in RCA: 154] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2009] [Revised: 08/27/2009] [Accepted: 08/29/2009] [Indexed: 11/30/2022]
45
Frank J. Single-particle reconstruction of biological macromolecules in electron microscopy--30 years. Q Rev Biophys 2009;42:139-58. [PMID: 20025794 PMCID: PMC2844734 DOI: 10.1017/s0033583509990059] [Citation(s) in RCA: 110] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
46
Shaikh TR, Gao H, Baxter WT, Asturias FJ, Boisset N, Leith A, Frank J. SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs. Nat Protoc 2009;3:1941-74. [PMID: 19180078 DOI: 10.1038/nprot.2008.156] [Citation(s) in RCA: 353] [Impact Index Per Article: 23.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
47
Sorzano COS, Otero A, Olmos EM, Carazo JM. Error analysis in the determination of the electron microscopical contrast transfer function parameters from experimental power Spectra. BMC STRUCTURAL BIOLOGY 2009;9:18. [PMID: 19321015 PMCID: PMC2683171 DOI: 10.1186/1472-6807-9-18] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/18/2008] [Accepted: 03/26/2009] [Indexed: 11/10/2022]
48
Yang C, Jiang W, Chen DH, Adiga U, Ng EG, Chiu W. Estimating contrast transfer function and associated parameters by constrained non-linear optimization. J Microsc 2009;233:391-403. [PMID: 19250460 DOI: 10.1111/j.1365-2818.2009.03137.x] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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High-resolution single-particle 3D analysis on GroEL prepared by cryo-negative staining. Micron 2008;39:934-43. [DOI: 10.1016/j.micron.2007.11.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2007] [Revised: 11/05/2007] [Accepted: 11/06/2007] [Indexed: 11/23/2022]
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Maki-Yonekura S, Yonekura K. Electron digital imaging toward high-resolution structure analysis of biological macromolecules. MICROSCOPY AND MICROANALYSIS : THE OFFICIAL JOURNAL OF MICROSCOPY SOCIETY OF AMERICA, MICROBEAM ANALYSIS SOCIETY, MICROSCOPICAL SOCIETY OF CANADA 2008;14:362-369. [PMID: 18598572 DOI: 10.1017/s1431927608080665] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
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