The role of molecular shape similarity in specific molecular recognition

Vital significance of addition of "shape similarity" between solutes to shape complementarity for more precise molecular recognition in aqueous binary solvents

Precise and specific molecular recognition is vital to living systems. Discrimination has mainly been studied by using particular host molecules (e.g., crown ethers, cyclodextrin and urea derivatives). Several studies in various fields have pointed out that the famous "lock-and-key theory" (the concept of shape complementarity) is, at present, insufficient for understanding precise discrimination. This seems to come from the fact that various types of intermolecular interactions are decisive in such discrimination. This Review intends to describe the novel concept that "shape similarity" between interacting solutes should be added to "shape complementarity" for more precise discrimination to be achieved. Further, the role of shape similarity between solvent and solute molecules is also described. In relation to precise molecular recognition, weak interactions, which depend on the three-dimensional shape of substituents (shape-specific weak interactions), are described. Possibility of alterations in solvent structures is discussed in aqueous binary solvents.

N-Acylureido functionality as acceptor substituent in solvatochromic fluorescence probes: detection of carboxylic acids, alcohols, and fluoride ions

N,N'-Dicyclohexyl-N-(6'-methoxyanthryl-2-carbonyl)urea (1a) exhibits a strong solvatochromism with respect to its fluorescence properties. The emission maxima of 1a correlate well with the anion-stabilizing properties of the solvent. This feature allows the detection of analytes with high acceptor numbers, such as alcohols and carboxylic acids, and the detection of analytes such as fluoride ions which form strong hydrogen bonds with the amido hydrogen atom.