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Pankiewicz R. 2D NMR, FT-IR, ESI MS studies and DFT, PM5 semiempirical calculations of new benzoic semduramicin anhydride and their complexes with selected monovalent cations. J Mol Struct 2014. [DOI: 10.1016/j.molstruc.2013.12.021] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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2
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Libman J, Tor Y, Dayan I, Shanzer A, Lifson S. Synthetic Receptors Possessing Non-Covalent, Macrocyclic Rings. Isr J Chem 2013. [DOI: 10.1002/ijch.199200005] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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3
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The effect of the ionophore valinomycin on biomimetic solid supported lipid DPPTE/EPC membranes. Bioelectrochemistry 2007; 70:387-93. [DOI: 10.1016/j.bioelechem.2006.05.009] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2006] [Revised: 05/16/2006] [Accepted: 05/16/2006] [Indexed: 11/18/2022]
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4
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Engelberth J, Koch T, Kühnemann F, Boland W. Ionenkanalbildende Peptaibole sind hochwirksame Elicitoren des pflanzlichen Sekundärstoffwechsels und der Rankenkrümmung. Angew Chem Int Ed Engl 2000. [DOI: 10.1002/(sici)1521-3757(20000515)112:10<1928::aid-ange1928>3.0.co;2-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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5
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Reusch RN. Polyphosphate/poly-(R)-3-hydroxybutyrate) ion channels in cell membranes. PROGRESS IN MOLECULAR AND SUBCELLULAR BIOLOGY 1999; 23:151-82. [PMID: 10448676 DOI: 10.1007/978-3-642-58444-2_8] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- R N Reusch
- Department of Microbiology, Michigan State University, East Lansing 48824, USA
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Scrimin P, Tecilla P, Moss RA, Bracken K. Control of Permeation of Lanthanide Ions Across Phosphate-Functionalized Liposomal Membranes. J Am Chem Soc 1998. [DOI: 10.1021/ja972041+] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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7
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Pechulis AD, Thompson RJ, Fojtik JP, Schwartz HM, Lisek CA, Frye LL. The design, synthesis and transmembrane transport studies of a biomimetic sterol-based ion channel. Bioorg Med Chem 1997; 5:1893-901. [PMID: 9370033 DOI: 10.1016/s0968-0896(97)00085-0] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
A model sterol-based ion channel was rationally designed and synthesized. The potential ion channel is comprised of a tartrate-derived crown ether to which six steroids are appended. Macromolecule 1a was incorporated into phospholipid vesicles and shown to facilitate the transmembrane transport of sodium and lithium ions using alkali metal NMR spectroscopy.
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Affiliation(s)
- A D Pechulis
- Department of Chemistry, Rensselaer Polytechnic Institute, Troy, NY 12180, USA
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Das S, Lengweiler UD, Seebach D, Reusch RN. Proof for a nonproteinaceous calcium-selective channel in Escherichia coli by total synthesis from (R)-3-hydroxybutanoic acid and inorganic polyphosphate. Proc Natl Acad Sci U S A 1997; 94:9075-9. [PMID: 9256437 PMCID: PMC23036 DOI: 10.1073/pnas.94.17.9075] [Citation(s) in RCA: 95] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/1997] [Accepted: 06/19/1997] [Indexed: 02/05/2023] Open
Abstract
Traditionally, the structure and properties of natural products have been determined by total synthesis and comparison with authentic samples. We have now applied this procedure to the first nonproteinaceous ion channel, isolated from bacterial plasma membranes, and consisting of a complex of poly(3-hydroxybutyrate) and calcium polyphosphate. To this end, we have now synthesized the 128-mer of hydroxybutanoic acid and prepared a complex with inorganic calcium polyphosphate (average 65-mer), which was incorporated into a planar lipid bilayer of synthetic phospholipids. We herewith present data that demonstrate unambiguously that the completely synthetic complex forms channels that are indistinguishable in their voltage-dependent conductance, in their selectivity for divalent cations, and in their blocking behavior (by La3+) from channels isolated from Escherichia coli. The implications of our finding for prebiotic chemistry, biochemistry, and biology are discussed.
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Affiliation(s)
- S Das
- Department of Microbiology, Michigan State University, East Lansing, MI 48824, USA
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9
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Cleij MC, Scrimin P, Tecilla P, Tonellato U. Efficient and Highly Selective Copper(II) Transport across a Bulk Liquid Chloroform Membrane Mediated by Lipophilic Dipeptides. J Org Chem 1997. [DOI: 10.1021/jo9703257] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Marco C. Cleij
- Department of Organic Chemistry and Centro CNR Meccanismi di Reazioni Organiche, University of Padova, Via Marzolo 1, 35131 Padova, Italy, and Department of Chemical Sciences, University of Trieste, Via Giorgieri 1, 34127 Trieste, Italy
| | - Paolo Scrimin
- Department of Organic Chemistry and Centro CNR Meccanismi di Reazioni Organiche, University of Padova, Via Marzolo 1, 35131 Padova, Italy, and Department of Chemical Sciences, University of Trieste, Via Giorgieri 1, 34127 Trieste, Italy
| | - Paolo Tecilla
- Department of Organic Chemistry and Centro CNR Meccanismi di Reazioni Organiche, University of Padova, Via Marzolo 1, 35131 Padova, Italy, and Department of Chemical Sciences, University of Trieste, Via Giorgieri 1, 34127 Trieste, Italy
| | - Umberto Tonellato
- Department of Organic Chemistry and Centro CNR Meccanismi di Reazioni Organiche, University of Padova, Via Marzolo 1, 35131 Padova, Italy, and Department of Chemical Sciences, University of Trieste, Via Giorgieri 1, 34127 Trieste, Italy
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Vila N, Puggelli M, Gabrielli G. Langmuir-Blodgett monolayers and multilayers of gramicidin A and lipids as membrane-mimetic models. Colloids Surf A Physicochem Eng Asp 1996. [DOI: 10.1016/s0927-7757(96)03737-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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11
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Jing N, Prasad KU, Urry DW. The determination of binding constants of micellar-packaged gramicidin A by 13C-and 23Na-NMR. BIOCHIMICA ET BIOPHYSICA ACTA 1995; 1238:1-11. [PMID: 7544622 DOI: 10.1016/0005-2736(95)00095-k] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Based on the malonyl gramicidin A structure of a single-stranded head-to-head hydrogen bonded right-handed, beta 6.3-helix in dodecyl phosphocholine (DPC) lipid micelles (Jing et al. (1994) Biophys. J. 66, A353), the determination of cation binding sites for gramicidin A (GA) in DPC micelles becomes a significant step in the study of ion transport through the model channel. First, the investigation of cation binding sites in DPC micellar packaged gramicidin A was achieved by 13C-NMR experiments at 30 degrees C using four C-13 labeled GA samples. Then, the analyses based on two different equations, one for single and one for double occupancy, were employed to evaluate the correct occupancy model for GA in DPC micelles. The results clearly indicate double occupancy to be correct for Na+ ion as well as for K+, Rb+, Cs+, and Tl+ ions. Finally, the binding constants for Na+ ion were also estimated by the measurement of the longitudinal relaxation time (T1) using 23Na-NMR of the same sample at the same ffmperature as used for the 13C-NMR study. The binding constants obtained from 23Na-NMR are essentially equivalent to those determined from the 13C-chemical shifts.
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Affiliation(s)
- N Jing
- Laboratory of Molecular Biophysics, University of Alabama at Birmingham 35294-0019, USA
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Jing N, Urry DW. Ion pair binding of Ca2+ and Cl- ions in micellar-packaged gramicidin A. BIOCHIMICA ET BIOPHYSICA ACTA 1995; 1238:12-21. [PMID: 7544623 DOI: 10.1016/0005-2736(95)00094-j] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
The two independent NMR experiments were performed to investigate the interaction between CaCl2 and the gramicidin A (GA) ion transport channel, using 13C-enriched GA and GA molecules incorporated into dodecylphosphocholine (DPC) micelles. The chemical shifts of C-13 labeled carbonyl carbons vs. CaCl2 concentration demonstrate that Ca2+ and Cl- ions interact as an ion pair within the GA structure with the Cl- ion located near the position of the carbonyl group of the Trp11 residue some 5.5 A from the mouth of the GA helix, and the Ca2+ ion bound at the position of the carbonyl group of the Trp15 residue some 2.5 A from the entrance to the helical pore. The measurements of the 35Cl line-widths and transverse relaxation times illustrate that the interaction occurs between Cl- ions and GA in DPC when in CaCl2 solution, that no interaction is detected between Cl- ions and GA in DPC when in NaCl solution, and that the interaction between Cl- ions and GA in DPC when in MgCl2 solution is much weaker than in CaCl2 solution. In short, a Cl- ion can enter the GA when it is paired with a divalent Ca2+ ion; and Ca2+ and Cl- ions as a pair exchange rapidly with sites of the GA dimer.
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Affiliation(s)
- N Jing
- Laboratory of Molecular Biophysics, University of Alabama at Birmingham 35294-0019, USA
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Fyles T, Kaye KC, James TD, Smiley DW. Biomimetic ion transport: Synthesis and activity of an amphotericin mimic. Tetrahedron Lett 1990. [DOI: 10.1016/s0040-4039(00)88773-0] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Urry DW, Trapane TL, Venkatachalam CM, McMichens RB. Ion interactions at membranous polypeptide sites using nuclear magnetic resonance: determining rate and binding constants and site locations. Methods Enzymol 1989; 171:286-342. [PMID: 2480504 DOI: 10.1016/s0076-6879(89)71018-1] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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16
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Abstract
The complex permittivities of L-alpha-lysolecithin in the absence and presence of the gramicidin A ion channel were measured over the temperature range 0-60 degrees C and over the frequency range 1-1000 MHz. One dielectric relaxation/loss has been observed. It is located at 103.3 MHz (1.54 ns) for a micellar 0.4 M L-alpha-lysolecithin solution at 20 degrees C, whereas it is shifted to 71.7 MHz (2.22 ns) for a lamellar L-alpha-lysolecithin-gramicidin A aqueous solution (0.4 M L-alpha-lysolecithin, 0.0308 M gramicidin A) at 20 degrees C. The dielectric relaxation decreases and the relaxation time increases when gramicidin A is incorporated into L-alpha-lysolecithin. These dielectric changes are related, in part, to the micellar-to-lamellar lipid phase transition induced by the incorporation of gramicidin A into lysolecithin. We suggest that the diffuse rotational motion of the polar head group of L-alpha-lysolecithin contributes to the dielectric relaxation/loss at around 100 MHz.
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Affiliation(s)
- R Buchet
- Department of Biochemistry and Molecular Biology State University of New York, Syracuse 13210
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Buchet R. Dielectric relaxation spectroscopy on dimyristoylphosphatidylcholine-packaged gramicidin A. Chem Phys Lipids 1988; 47:299-307. [PMID: 2461262 DOI: 10.1016/0009-3084(88)90053-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
The complex permittivities of aqueous suspensions of 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) and of DMPC packaged gramicidin A' (DMPC-GA) have been determined over the frequency range of 1 MHz to 1 GHz and the temperature range of 0-60 degrees C. A dielectric relaxation/loss has been observed at about 66 MHz for the DMPC suspension (30 degrees C) and at about 57 MHz for the DMPC-GA suspension (30 degrees C). This dielectric relaxation/loss has been attributed to the rotational mobility of the zwitterionic group of DMPC. The temperature dependence (from 60 degrees C to 0 degrees C) of this dispersion/absorption process of the DMPC suspension indicates a sharp reduction of the dielectric relaxation at about 20 degrees C. This dielectric change is related to the conversions of shape and structure of bilayer aggregates. This sharp reduction of the dielectric relaxation disappears or broadens when GA is incorporated into the DMPC aqueous suspension. The interpretation of these results is that the GA addition into the DMPC aqueous suspension induces a small decrease of the rotational mobility of the zwitterionic group above the lipid phase transition, and a small increase of the rotational mobility of the zwitterionic group below the lipid phase transition.
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Affiliation(s)
- R Buchet
- State University of New York, Department of Biochemistry & Molecular Biology, Syracuse 13210
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Supramolecular chemistry ? Scope and perspectives: Molecules ? Supermolecules ? Molecular devices. ACTA ACUST UNITED AC 1988. [DOI: 10.1007/bf00658981] [Citation(s) in RCA: 91] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Chapter 4 Ion Interactions with the Gramicidin A Transmembrane Channel: Cesium-133 and Calcium-43 NMR Studies. ACTA ACUST UNITED AC 1988. [DOI: 10.1016/s0070-2161(08)60894-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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20
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The “chundle” approach to molecular channels synthesis of a macrocycle-based molecular bundle. Tetrahedron Lett 1988. [DOI: 10.1016/s0040-4039(00)82119-x] [Citation(s) in RCA: 81] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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21
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Lehn JM. Supramolekulare Chemie – Moleküle, Übermoleküle und molekulare Funktionseinheiten (Nobel-Vortrag). Angew Chem Int Ed Engl 1988. [DOI: 10.1002/ange.19881000110] [Citation(s) in RCA: 577] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Merz T, Wirtz H, Vögtle F. Anionische Wirtmoleküle mit bicyclischem Kohlenstoffgerüst — Synthese und Gasteinschluß in wäßriger Lösung. Angew Chem Int Ed Engl 1986. [DOI: 10.1002/ange.19860980608] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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