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Schürmann CJ, Teuteberg TL, Stückl AC, Ruth PN, Hecker F, Herbst‐Irmer R, Mata RA, Stalke D. Trapping X‐ray Radiation Damage from Homolytic Se−C Bond Cleavage in BnSeSeBn Crystals (Bn=benzyl, CH
2
C
6
H
5
). Angew Chem Int Ed Engl 2022; 61:e202203665. [PMID: 35417063 PMCID: PMC9320817 DOI: 10.1002/anie.202203665] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Indexed: 11/24/2022]
Abstract
Irradiation of dibenzyl diselenide BnSeSeBn with X‐ray or UV‐light cleaves the Se−C and the Se−Se bonds, inducing stable and metastable radical states. They are inevitably important to all natural and life sciences. Structural changes due to X‐ray‐induced Se−C bond‐cleavage could be pin‐pointed in various high‐resolution X‐ray diffraction experiments for the first time. Extended DFT methods were applied to characterize the solid‐state structure and support the refinement of the observed residuals as contributions from the BnSeSe⋅ radical species. The X‐ray or UV‐irradiated crystalline samples of BnSeSeBn were characterized by solid‐state EPR. This paper provides insight that in the course of X‐ray structure analysis of selenium compounds not only organo‐selenide radicals like RSe⋅ may occur, but also organo diselenide BnSeSe⋅ radicals and organic radicals R⋅ are generated, particularly important to know in structural biology.
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Affiliation(s)
- Christian J. Schürmann
- Georg-August Universität Göttingen Institut für Anorganische Chemie Tammannstraße 4 37077 Göttingen Germany
| | - Thorsten L. Teuteberg
- Georg-August Universität Göttingen Institut für Physikalische Chemie Tammannstraße 2 37077 Göttingen Germany
| | - A. Claudia Stückl
- Georg-August Universität Göttingen Institut für Anorganische Chemie Tammannstraße 4 37077 Göttingen Germany
| | - Paul Niklas Ruth
- Georg-August Universität Göttingen Institut für Anorganische Chemie Tammannstraße 4 37077 Göttingen Germany
| | - Fabian Hecker
- Max-Planck-Institut für Biophysikalische Chemie Am Fassberg 11 37077 Göttingen Germany
| | - Regine Herbst‐Irmer
- Georg-August Universität Göttingen Institut für Anorganische Chemie Tammannstraße 4 37077 Göttingen Germany
| | - Ricardo A. Mata
- Georg-August Universität Göttingen Institut für Physikalische Chemie Tammannstraße 2 37077 Göttingen Germany
| | - Dietmar Stalke
- Georg-August Universität Göttingen Institut für Anorganische Chemie Tammannstraße 4 37077 Göttingen Germany
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2
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Iron(III) chloride and dialkyl diselenides promoted intramolecular cascade cyclization leading to synthesis of selenophene-fused quinoline based heterocycles. Tetrahedron Lett 2022. [DOI: 10.1016/j.tetlet.2022.153907] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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3
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Schürmann CJ, Teuteberg TT, Stückl AC, Ruth PN, Hecker F, Herbst-Irmer R, Mata RA, Stalke D. Trapping X‐ray Radiation Damage from Homolytic Se–C Bond Cleavage in BnSeSeBn Crystals (Bn=benzyl, CH2C6H5). Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202203665] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
| | - Thorsten T. Teuteberg
- Georg-August-Universität Göttingen: Georg-August-Universitat Gottingen Institur für Physikalische Chemie GERMANY
| | - A. Claudia Stückl
- Georg-August-Universität Göttingen: Georg-August-Universitat Gottingen Institut für Anorganische Chemie GERMANY
| | - Paul N. Ruth
- Georg-August-Universität Göttingen: Georg-August-Universitat Gottingen Institut für Anorganische Chemie GERMANY
| | - Fabian Hecker
- Max-Planck-Institut für biophysikalische Chemie: Max-Planck-Institut fur biophysikalische Chemie Biophysikalische Chemie GERMANY
| | - Regine Herbst-Irmer
- Georg-August-Universität Göttingen: Georg-August-Universitat Gottingen Institut für Anorganische Chemie GERMANY
| | - Ricardo A. Mata
- Georg-August-Universität Göttingen: Georg-August-Universitat Gottingen Institut für Physikalische Chemie GERMANY
| | - Dietmar Stalke
- Universität Göttingen Institut für Anorganische und Analytische Chemie Tammannstraße 4 37077 Göttingen GERMANY
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4
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Cutsail GE. Applications of electron paramagnetic resonance spectroscopy to heavy main-group radicals. Dalton Trans 2020; 49:12128-12135. [PMID: 32812583 DOI: 10.1039/d0dt02436h] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
The exploration of heavy main-group radicals is rapidly expanding, for which electron paramagnetic resonance (EPR) spectroscopic characterisation plays a key role. EPR spectroscopy has the capacity to deliver information of the radical's electronic, geometric and bonding structure. Herein, foundations of electron-nuclear hyperfine analysis are detailed before reviewing more recent applications of EPR spectroscopy to As, Sb, and Bi centred radicals. Additional diverse examples of the application of EPR spectroscopy to other heavy main group radicals are highlighted.
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Affiliation(s)
- George E Cutsail
- Max Planck Institute for Chemical Energy Conversion, Stiftstraße 34-36, D-45470 Mülheim an der Ruhr, Germany.
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5
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Mardyukov A, Tsegaw YA, Sander W, Schreiner PR. The phenylselenyl radical and its reaction with molecular oxygen. Phys Chem Chem Phys 2017; 19:27384-27388. [DOI: 10.1039/c7cp05546c] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The phenylselenyl radical and its primary oxidation products phenylselenyl peroxy and phenylselenoyl radicals were generated and subsequently isolated in solid noble gas matrices for the first time.
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Affiliation(s)
- Artur Mardyukov
- Institute of Organic Chemistry
- Justus-Liebig University
- Heinrich-Buff-Ring 17
- 35392 Giessen
- Germany
| | - Yetsedaw A. Tsegaw
- Lehrstuhl für Organische Chemie II
- Ruhr-Universität Bochum
- 44780 Bochum
- Germany
| | - Wolfram Sander
- Lehrstuhl für Organische Chemie II
- Ruhr-Universität Bochum
- 44780 Bochum
- Germany
| | - Peter R. Schreiner
- Institute of Organic Chemistry
- Justus-Liebig University
- Heinrich-Buff-Ring 17
- 35392 Giessen
- Germany
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6
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Hu M, Liu F, Buriak JM. Expanding the Repertoire of Molecular Linkages to Silicon: Si-S, Si-Se, and Si-Te Bonds. ACS APPLIED MATERIALS & INTERFACES 2016; 8:11091-11099. [PMID: 27055056 DOI: 10.1021/acsami.6b00784] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Silicon is the foundation of the electronics industry and is now the basis for a myriad of new hybrid electronics applications, including sensing, silicon nanoparticle-based imaging and light emission, photonics, and applications in solar fuels, among others. From interfacing of biological materials to molecular electronics, the nature of the chemical bond plays important roles in electrical transport and can have profound effects on the electronics of the underlying silicon itself, affecting its work function, among other things. This work describes the chemistry to produce ≡Si-E bonds (E = S, Se, and Te) through very fast microwave heating (10-15 s) and direct thermal heating (hot plate, 2 min) through the reaction of hydrogen-terminated silicon surfaces with dialkyl or diaryl dichalcogenides. The chemistry produces surface-bound ≡Si-SR, ≡Si-SeR, and ≡Si-TeR groups. Although the interfacing of molecules through ≡Si-SR and ≡Si-SeR bonds is known, to the best of our knowledge, the heavier chalcogenide variant, ≡Si-TeR, has not been described previously. The identity of the surface groups was determined by Fourier transform infrared (FTIR) spectroscopy, X-ray photoelectron spectroscopy (XPS), and depth profiling with time-of-flight-secondary ionization mass spectrometry (ToF-SIMS). Possible mechanisms are outlined, and the most likely, based upon parallels with well-established molecular literature, involve surface silyl radicals or dangling bonds that react with either the alkyl or aryl dichalcogenide directly, REER, or its homolysis product, the alkyl or aryl chalcogenyl radical, RE· (where E = S, Se, and Te).
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Affiliation(s)
- Minjia Hu
- Department of Chemistry, University of Alberta , 11227 Saskatchewan Drive, Edmonton, Alberta T6G 2G2, Canada
- National Institute for Nanotechnology, National Research Council Canada , 11421 Saskatchewan Drive, Edmonton, Alberta T6G 2M9, Canada
| | - Fenglin Liu
- Department of Chemistry, University of Alberta , 11227 Saskatchewan Drive, Edmonton, Alberta T6G 2G2, Canada
- National Institute for Nanotechnology, National Research Council Canada , 11421 Saskatchewan Drive, Edmonton, Alberta T6G 2M9, Canada
| | - Jillian M Buriak
- Department of Chemistry, University of Alberta , 11227 Saskatchewan Drive, Edmonton, Alberta T6G 2G2, Canada
- National Institute for Nanotechnology, National Research Council Canada , 11421 Saskatchewan Drive, Edmonton, Alberta T6G 2M9, Canada
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7
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Pan XQ, Zou JP, Yi WB, Zhang W. Recent advances in sulfur- and phosphorous-centered radical reactions for the formation of S–C and P–C bonds. Tetrahedron 2015. [DOI: 10.1016/j.tet.2015.04.117] [Citation(s) in RCA: 131] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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8
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Buriak JM, Sikder MDH. From Molecules to Surfaces: Radical-Based Mechanisms of Si–S and Si–Se Bond Formation on Silicon. J Am Chem Soc 2015; 137:9730-8. [DOI: 10.1021/jacs.5b05738] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Jillian M. Buriak
- Department
of Chemistry, University of Alberta, and the National Institute for Nanotechnology, Edmonton, AB T6G 2G2, Canada
| | - Md Delwar H. Sikder
- Department
of Chemistry, University of Alberta, and the National Institute for Nanotechnology, Edmonton, AB T6G 2G2, Canada
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9
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Iwasaki M, Fujii T, Nakajima K, Nishihara Y. Iron-induced regio- and stereoselective addition of sulfenyl chlorides to alkynes by a radical pathway. Angew Chem Int Ed Engl 2014; 53:13880-4. [PMID: 25319321 DOI: 10.1002/anie.201408121] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2014] [Revised: 09/25/2014] [Indexed: 11/09/2022]
Abstract
The radical addition of the Cl-S σ-bond in sulfenyl chlorides to various C-C triple bonds has been achieved with excellent regio- and stereoselectivity in the presence of a catalytic amount of a common iron salt. The reaction is compatible with a variety of functional groups and can be scaled up to the gram-scale with no loss in yield. As well as terminal alkynes, internal alkynes underwent stereodefined chlorothiolation to provide tetrasubstituted alkynes. Preliminary mechanistic investigations revealed a plausible radical process involving a sulfur-centered radical intermediate via iron-mediated homolysis of the Cl-S bond. The resulting chlorothiolation adducts can be readily transformed to the structurally complex alkenyl sulfides by cross-coupling reactions. The present reaction can also be applied to the complementary synthesis of the potentially useful bis-sulfoxide ligands for transition-metal-catalyzed reactions.
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Affiliation(s)
- Masayuki Iwasaki
- Division of Earth, Life, and Molecular Sciences, Graduate School of Natural Science and Technology, Okayama University, 3-1-1 Tsushimanaka, Kita-ku, Okayama 700-8530 (Japan)
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Iron-Induced Regio- and Stereoselective Addition of Sulfenyl Chlorides to Alkynes by a Radical Pathway. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201408121] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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11
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12
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Synthesis of natural quinazolinones and some of their analogues through radical cascade reactions involving N-acylcyanamides. Tetrahedron 2013. [DOI: 10.1016/j.tet.2013.05.058] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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13
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Dénès F, Schiesser CH, Renaud P. Thiols, thioethers, and related compounds as sources of C-centred radicals. Chem Soc Rev 2013; 42:7900-42. [DOI: 10.1039/c3cs60143a] [Citation(s) in RCA: 72] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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14
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Sato A, Yorimitsu H, Oshima K. Regio- and stereoselective synthesis of 1-aryl-1-thio-2-thiophosphinylethene derivatives via a radical process. Tetrahedron 2009. [DOI: 10.1016/j.tet.2008.12.071] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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15
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Hyugano T, Liu S, Ouchi A. Facile Photochemical Transformation of Alkyl Aryl Selenides to the Corresponding Carbonyl Compounds by Molecular Oxygen: Use of Selenides as Masked Carbonyl Groups. J Org Chem 2008; 73:8861-6. [DOI: 10.1021/jo801730j] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Takeshi Hyugano
- Graduate School of Pure and Applied Sciences, University of Tsukuba, Ibaraki 305-8571, and the National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki 305-8565, Japan
| | - Suyou Liu
- Graduate School of Pure and Applied Sciences, University of Tsukuba, Ibaraki 305-8571, and the National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki 305-8565, Japan
| | - Akihiko Ouchi
- Graduate School of Pure and Applied Sciences, University of Tsukuba, Ibaraki 305-8571, and the National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki 305-8565, Japan
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16
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Bräse S, Gil C, Knepper K, Zimmermann V. Organic azides: an exploding diversity of a unique class of compounds. Angew Chem Int Ed Engl 2006; 44:5188-240. [PMID: 16100733 DOI: 10.1002/anie.200400657] [Citation(s) in RCA: 1626] [Impact Index Per Article: 90.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Since the discovery of organic azides by Peter Griess more than 140 years ago, numerous syntheses of these energy-rich molecules have been developed. In more recent times in particular, completely new perspectives have been developed for their use in peptide chemistry, combinatorial chemistry, and heterocyclic synthesis. Organic azides have assumed an important position at the interface between chemistry, biology, medicine, and materials science. In this Review, the fundamental characteristics of azide chemistry and current developments are presented. The focus will be placed on cycloadditions (Huisgen reaction), aza ylide chemistry, and the synthesis of heterocycles. Further reactions such as the aza-Wittig reaction, the Sundberg rearrangement, the Staudinger ligation, the Boyer and Boyer-Aubé rearrangements, the Curtius rearrangement, the Schmidt rearrangement, and the Hemetsberger rearrangement bear witness to the versatility of modern azide chemistry.
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Affiliation(s)
- Stefan Bräse
- Institut für Organische Chemie, Universität Karlsruhe TH, Germany.
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17
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Bräse S, Gil C, Knepper K, Zimmermann V. Organische Azide - explodierende Vielfalt bei einer einzigartigen Substanzklasse. Angew Chem Int Ed Engl 2005. [DOI: 10.1002/ange.200400657] [Citation(s) in RCA: 346] [Impact Index Per Article: 18.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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18
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McDonough JE, Weir JJ, Carlson MJ, Hoff CD, Kryatova OP, Rybak-Akimova EV, Clough CR, Cummins CC. Solution calorimetric and stopped-flow kinetic studies of the reaction of *Cr(CO)3C5Me5 with PhSe-SePh and PhTe-TePh. Experimental and theoretical estimates of the Se-Se, Te-Te, H-Se, and H-Te bond strengths. Inorg Chem 2005; 44:3127-36. [PMID: 15847418 DOI: 10.1021/ic048321p] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The kinetics of the oxidative addition of PhSeSePh and PhTeTePh to the stable 17-electron complex *Cr(CO)3C5Me5 have been studied utilizing stopped-flow techniques. The rates of reaction are first-order in each reactant, and the enthalpy of activation decreases in going from Se (deltaH(double dagger) = 7.0 +/- 0.5 kcal/mol, deltaS(double dagger) = -22 +/- 3 eu) to Te (deltaH(double dagger) = 4.0 +/- 0.5 kcal/mol, deltaS(double dagger) = -26 +/- 3 eu). The kinetics of the oxidative addition of PhSeH and *Cr(CO)3C5Me5 show a change in mechanism in going from low (overall third-order) to high (overall second-order) temperatures. The enthalpies of the oxidative addition of PhE-EPh to *Cr(CO)3C5Me5 in toluene solution have been measured and found to be -29.6, -30.8, and -28.9 kcal/mol for S, Se, and Te, respectively. These data are combined with enthalpies of activation from kinetic studies to yield estimates for the solution-phase PhE-EPh bond strengths of 46, 41, and 33 kcal/mol for E = S, Se, and Te, respectively. The corresponding Cr-EPh bond strengths are 38, 36, and 31 kcal/mol. Two methods have been used to determine the enthalpy of hydrogenation of PhSeSePh in toluene on the basis of reactions of HSPh and HSePh with either *Cr(CO)3C5Me5 or 2-pyridine thione. These data lead to a thermochemical estimate of 72 kcal/mol for the PhSe-H bond strength in toluene solution, which is in good agreement with kinetic studies of H atom transfer from HSePh at higher temperatures. The reaction of H-Cr(CO)3C5Me5 with PhSe-SePh is accelerated by the addition of a Cr radical and occurs via a rapid radical chain reaction. In contrast, the reaction of PhTe-TePh and H-Cr(CO)3C5Me5 does not occur at any appreciable rate at room temperature, even in the presence of added Cr radicals. This is in keeping with a low PhTe-H bond strength blocking the chain and implies that H-TePh < or = 63 kcal/mol. Structural data are reported for PhSe-Cr(CO)3C5Me5 and PhS-Cr(CO)3C5Me5. The two isostructural complexes do not show signs of an increase in steric strain in terms of metal-ligand bonds or angles as the Cr-EPh bond is shortened in going from Se to S. Bond strength estimates of the PhE-H and PhE-EPh derived from density functional theory calculations are in reasonable agreement with experimental data for E = Se but not for E = Te. The nature of the singly occupied molecular orbital of the *EPh radicals is calculated to show increasing localization on the chalcogenide atom in going from S to Se to Te.
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Affiliation(s)
- James E McDonough
- Department of Chemistry, University of Miami, 1301 Memorial Drive, Coral Gables, Florida 33146, USA
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19
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Power PP. Persistent and stable radicals of the heavier main group elements and related species. Chem Rev 2003; 103:789-810. [PMID: 12630853 DOI: 10.1021/cr020406p] [Citation(s) in RCA: 405] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Philip P Power
- Department of Chemistry, University of California-Davis, One Shields Avenue, Davis, CA 95616, USA
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Lu J, Xie Y, Xu F, Zhu L. Study of the dissolution behavior of selenium and tellurium in different solvents—a novel route to Se, Te tubular bulk single crystals. ACTA ACUST UNITED AC 2002. [DOI: 10.1039/b204092a] [Citation(s) in RCA: 148] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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