Sedimentary Archives Reveal the Concealed History of Micropollutant Contamination in the Seine River Basin

Impact of land-use on PAH transfer in sub-surface water as recorded by CaCO3 concretions in urban underground structures (Paris, France)

In densely populated urban areas, the pressure on water resources is considerable and will tend to intensify over the next decades. Preserving water resources therefore seems fundamental, but many questions remain as to the transfer of contaminants to subsurface waters in these largely sealed areas. Because of their toxicity and persistence in the environment, this work focused on the study of polycyclic aromatic hydrocarbons (PAHs), ubiquitous pollutants mainly produced by human activities. To better understand the main factors leading to the retention or transport of these pollutants in urban environments, vertical transects, from the surface to several meters down, were established on three study sites in or near Paris (France), selected according to an urbanization gradient. Soil samples collected at the surface and urban secondary carbonate deposits (USCD), similar to cave speleothems, sampled underground in quarries and aqueducts were analyzed. As the hydrophobic properties of PAHs favor their sorption onto organic matter, the latter was also studied using organic carbon analysis and UV fluorescence spectroscopy. The USCD located closest to the urbanized surface contained high concentrations of PAHs (76.8 ± 5.3 ng g-1), while the USCD located at greater depth with organic soil on the surface contained the lowest amount of PAHs (2.9 ± 0.4 ng g-1), and no PAHs with log KOC > 5. The results highlight the predominant role played by the presence of organic topsoil at the surface in retaining and storing large amounts of PAHs (1914-2595 ng. gsoil-1), particularly the most hydrophobic ones (i.e. 60% of the 15 PAHs are characterized by a Log KOC >5), which are also the most toxic. The lithology and thickness of the bedrock (between the surface and the USCD) also play an important role in the retention of PAHs, particularly those adsorbed on the particulate phase.

Increasing the power of interpretation for soil metaproteomics data

BACKGROUND

Soil and sediment microorganisms are highly phylogenetically diverse but are currently largely under-represented in public molecular databases. Their functional characterization by means of metaproteomics is usually performed using metagenomic sequences acquired for the same sample. However, such hugely diverse metagenomic datasets are difficult to assemble; in parallel, theoretical proteomes from isolates available in generic databases are of high quality. Both these factors advocate for the use of theoretical proteomes in metaproteomics interpretation pipelines. Here, we examined a number of database construction strategies with a view to increasing the outputs of metaproteomics studies performed on soil samples.

RESULTS

The number of peptide-spectrum matches was found to be of comparable magnitude when using public or sample-specific metagenomics-derived databases. However, numbers were significantly increased when a combination of both types of information was used in a two-step cascaded search. Our data also indicate that the functional annotation of the metaproteomics dataset can be maximized by using a combination of both types of databases.

CONCLUSIONS

A two-step strategy combining sample-specific metagenome database and public databases such as the non-redundant NCBI database and a massive soil gene catalog allows maximizing the metaproteomic interpretation both in terms of ratio of assigned spectra and retrieval of function-derived information. Video abstract.

Record of trace organic contaminants in a river sediment core: From historical wastewater management to historical use

Some trace organic contaminants (TrOCs) can be considered as ubiquitous contaminants since the 1950s, and the study of their historical distribution within river sediments allows us to better understand the temporal variation of the chemical quality of sediments, and make assumptions about the most insightful forcings impacting these distributions. In this study, the occurrence of 41 TrOCs of various classes (i.e. pharmaceutical products and pesticides) was studied in a sedimentary core sampled in a disused dock along the Seine River, France. This core covers a 60 year-long period between 1944 and 2003, and 23 TrOCs were detected at least once. Their concentrations mainly ranged between 1 and 10 ng g^-1 within the core, except for tetracycline that exhibited higher concentrations (~hundreds of ng·g^-1). The dating of the core, based on previous studies, enabled the characterization of the changes since 1945, potentially impacted by (i) the sewer connectivity, (ii) the upgrading of wastewater treatment technologies, (iii) historical modifications in the use of each TrOC, and (iv) the sedimentary composition. In every case the deepest occurrence of each TrOC in the core matched its market authorization date, indicating the potential of TrOC to be used as chronomarkers. This study also reveals that the recent upgrading of wastewater treatment technologies within the watershed decreased the concentrations of each TrOC, despite an increase in TrOC diversity in the most recent years.

River Basin Visions: Tools and Approaches from Yesterday to Tomorrow

The aim of this chapter is to provide a critical assessment of the approaches and production of tools within the PIREN-Seine programme over the past 30 years, as well as their use for river basin management and river quality improvement, and to analyse the challenges for the future. Three types of tools used in the PIREN-Seine programme are presented: metrology and fieldwork; model construction, simulation and their use in scenarios; and participatory science tools. These tools have been gradually built by the PIREN-Seine researchers and often developed together with the partners of the research programme, the main managers of the Seine River basin. Three issues raised by scientists and their partners are identified: (1) for metrology, how it has been improved to measure the state of waterbodies and to avoid their degradation; (2) for models, what they currently do and do not do and how they share common knowledge with practitioners; and (3) the place of researchers in the use of participatory devices in territories and their view of the effects of these tools to improve the quality of rivers and aquifers.

The Evolution of the Seine Basin Water Bodies Through Historical Maps

The Seine River basin (65,000 km2) is extremely rich in cartographic documents generated over the past two centuries: general maps describing the territory, fiscal land registries, navigation charts (e.g. bathymetric profiles and maps), etc. After 1830 river engineers (Ponts et Chaussées) started to develop a huge network of waterways, which were charted with precision and accuracy. These documents, retrieved from various archives, have been checked, selected, geo-referenced and digitalised within an open-access database (ArchiSeine). It has allowed researchers to fully quantify the state of rivers, often in their lateral, longitudinal and vertical dimensions, their long-term and slow natural dynamics (e.g. meander movement) and their abrupt modifications by man-made river works due to various and evolving river use (water supply, wood rafting, navigation, hydropower, sand extraction, flood protection), all closely connected to Paris growing demands, and the adjustments of the fluvial system to these changes. From headwaters to the estuary, the physical attributes of the Seine River system have been substantially modified. Examples of such environmental trajectories are provided for the Versailles plateau headwaters, the Bassée alluvial plain and the Lower Seine sector.

Trajectories of the Seine River Basin

The Seine River basin in France (76,238 km2, 17 million (M) people) has been continuously studied since 1989 by the PIREN-Seine, a multidisciplinary programme of about 100 scientists from 20 research units (hydrologists, environmental chemists, ecologists, biogeochemists, geographers, environmental historians). Initially PIREN-Seine was established to fill the knowledge gap on the river functioning, particularly downstream of the Paris conurbation (12 M people), where the pressure and impacts were at their highest in the 1980s (e.g. chronic summer hypoxia). One aim was to provide tools, such as models, to manage water resources and improve the state of the river. PIREN-Seine gradually developed into a general understanding and whole-basin modelling, from headwater streams to the estuary, of the complex interactions between the hydrosystem (surface water and aquifers), the ecosystem (phytoplankton, bacteria, fish communities), the agronomic system (crops and soils), the river users (drinking water, navigation), and the urban and industrial development (e.g. waste water treatment plants). Spatio-temporal scales of these interactions and the related state of the environment vary from the very fine (hour-meter) to the coarser scale (annual – several dozen km). It was possible to determine the trajectories (drivers-pressures – state-responses) for many issues, over the longue durée time windows (50–200 years), in relation to the specific economic and demographic evolution of the Seine basin, the environmental awareness, and the national and then European regulations. Time trajectories of the major environmental issues, from the original organic and microbial pollutants in the past to the present emerging contaminants, are addressed. Future trajectories are simulated by our interconnected modelling approaches, based on scenarios (e.g. of the agro-food system, climate change, demography, etc.) constructed by scientists and engineers of major basin institutions that have been supporting the programme in the long term. We found many cumulated and/or permanent hereditary effects on the physical, chemical, and ecological characteristics of the basin that may constrain its evolution. PIREN-Seine was launched and has been evaluated since its inception, by the National Centre for Scientific Research (CNRS), today within its national Zones Ateliers (ZA) instrument, part of the international Long-Term Socio-Economic and Ecosystem Research (LTSER) network.