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Romero-Fernández MP, Cintas P, Rojas-Buzo S. Switchable Cycloadditions of Mesoionic Dipoles: Refreshing up a Regioselective Approach to Two Distinctive Heterocycles. J Org Chem 2022; 87:12854-12866. [PMID: 36103345 PMCID: PMC9552231 DOI: 10.1021/acs.joc.2c01444] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
Abstract
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Mesoionic rings are
among the most versatile 1,3-dipoles, as witnessed
recently by their incorporation into bio-orthogonal strategies, and
capable of affording unconventional heterocycles beyond the expected
scope of Huisgen cycloadditions. Herein, we revisit in detail the
reactivity of thiazol-3-ium-4-olates with alkynes, leading to thiophene
and/or pyrid-2-one derivatives. A structural variation at the parent
mesoionic dipole alters sufficiently the steric outcome, thereby favoring
the regioselective formation of a single transient cycloadduct, which
undergoes chemoselective fragmentation to either five- or six-membered
heterocycles. The synthetic protocol benefits largely from microwave
(MW) activation, which enhances reaction rates. The mechanism has
been interrogated with the aid of density functional theory (DFT)
calculations, which sheds light into the origin of the regioselectivity
and points to a predictive formulation of reactivity involving competing
pathways of mesoionic cycloadditions.
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Affiliation(s)
- M. Pilar Romero-Fernández
- Department of Organic and Inorganic Chemistry, Faculty of Sciences, and IACYS-Green Chemistry and Sustainable Development Unit, University of Extremadura, 06006 Badajoz, Spain
| | - Pedro Cintas
- Department of Organic and Inorganic Chemistry, Faculty of Sciences, and IACYS-Green Chemistry and Sustainable Development Unit, University of Extremadura, 06006 Badajoz, Spain
| | - Sergio Rojas-Buzo
- Department of Organic and Inorganic Chemistry, Faculty of Sciences, and IACYS-Green Chemistry and Sustainable Development Unit, University of Extremadura, 06006 Badajoz, Spain
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2
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Porte K, Riomet M, Figliola C, Audisio D, Taran F. Click and Bio-Orthogonal Reactions with Mesoionic Compounds. Chem Rev 2021; 121:6718-6743. [PMID: 33238101 DOI: 10.1021/acs.chemrev.0c00806] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Click and bio-orthogonal reactions are dominated by cycloaddition reactions in general and 1,3-dipolar cycloadditions in particular. Among the dipoles routinely used for click chemistry, azides, nitrones, isonitriles, and nitrile oxides are the most popular. This review is focused on the emerging click chemistry that uses mesoionic compounds as dipole partners. Mesoionics are a very old family of molecules, but their use as reactants for click and bio-orthogonal chemistry is quite recent. The facility to derivatize these dipoles and to tune their reactivity toward cycloaddition reactions makes mesoionics an attractive opportunity for future click chemistry development. In addition, some compounds from this family are able to undergo click-and-release reactions, finding interesting applications in cells, as well as in animals. This review covers the synthetic access to main mesoionics, their reaction with dipolarophiles, and recent applications in chemical biology and heterocycle synthesis.
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Affiliation(s)
- Karine Porte
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
| | - Margaux Riomet
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
| | - Carlotta Figliola
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
| | - Davide Audisio
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
| | - Frédéric Taran
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
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3
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Cherepanov IA, Trankina ES, Frolova NG, Godovikov IA, Lyssenko KA. Unusual sydnones based di- and trisilamacrocycles. J Organomet Chem 2020. [DOI: 10.1016/j.jorganchem.2020.121349] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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4
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Riomet M, Porte K, Madegard L, Thuéry P, Audisio D, Taran F. Access to N-Carbonyl Derivatives of Iminosydnones by Carbonylimidazolium Activation. Org Lett 2020; 22:2403-2408. [PMID: 32155081 DOI: 10.1021/acs.orglett.0c00600] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
A new methodology for N-exocyclic functionalization of iminosydnones was developed involving the addition of a large variety of nucleophiles on carbonyl-imidazolium-activated iminosydnones. This practical and highly versatile method provided access to new classes of iminosydnones and opened a straightforward synthetic route to prepare iminosydnone-based prodrugs.
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Affiliation(s)
- Margaux Riomet
- Université Paris-Saclay, Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT, 91191 Gif-sur-Yvette, France
| | - Karine Porte
- Université Paris-Saclay, Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT, 91191 Gif-sur-Yvette, France
| | - Léa Madegard
- Université Paris-Saclay, Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT, 91191 Gif-sur-Yvette, France
| | - Pierre Thuéry
- Université Paris-Saclay, NIMBE, CEA, CNRS, CEA-Saclay, 91191 Gif-sur-Yvette, France
| | - Davide Audisio
- Université Paris-Saclay, Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT, 91191 Gif-sur-Yvette, France
| | - Frédéric Taran
- Université Paris-Saclay, Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT, 91191 Gif-sur-Yvette, France
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5
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Cherepanov IA, Moiseev SK. Recent developments in the chemistry of sydnones and sydnone imines. ADVANCES IN HETEROCYCLIC CHEMISTRY 2020. [DOI: 10.1016/bs.aihch.2019.11.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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6
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Kumar RA, Pattanayak MR, Yen‐Pon E, Eliyan J, Porte K, Bernard S, Riomet M, Thuéry P, Audisio D, Taran F. Strain‐Promoted 1,3‐Dithiolium‐4‐olates–Alkyne Cycloaddition. Angew Chem Int Ed Engl 2019; 58:14544-14548. [DOI: 10.1002/anie.201908052] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Revised: 07/30/2019] [Indexed: 01/09/2023]
Affiliation(s)
- Ramar Arun Kumar
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
- SRM Research Institute Department of Chemistry SRM Institute of Science and Technology, Kattankulathur 603203 Chennai India
| | - Manas R. Pattanayak
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Expédite Yen‐Pon
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Jijy Eliyan
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Karine Porte
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Sabrina Bernard
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Margaux Riomet
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Pierre Thuéry
- NIMBE CEA CNRS Université Paris-Saclay 91191 Gif-sur-Yvette France
| | - Davide Audisio
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Frédéric Taran
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
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7
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Kumar RA, Pattanayak MR, Yen‐Pon E, Eliyan J, Porte K, Bernard S, Riomet M, Thuéry P, Audisio D, Taran F. Strain‐Promoted 1,3‐Dithiolium‐4‐olates–Alkyne Cycloaddition. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201908052] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Ramar Arun Kumar
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
- SRM Research Institute Department of Chemistry SRM Institute of Science and Technology, Kattankulathur 603203 Chennai India
| | - Manas R. Pattanayak
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Expédite Yen‐Pon
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Jijy Eliyan
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Karine Porte
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Sabrina Bernard
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Margaux Riomet
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Pierre Thuéry
- NIMBE CEA CNRS Université Paris-Saclay 91191 Gif-sur-Yvette France
| | - Davide Audisio
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Frédéric Taran
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
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8
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9
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Huang G, Yin B. Recent Developments in Transition Metal‐Catalyzed Dearomative Cyclizations of Indoles as Dipolarophiles for the Construction of Indolines. Adv Synth Catal 2018. [DOI: 10.1002/adsc.201800789] [Citation(s) in RCA: 108] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Guanghao Huang
- Key Laboratory of Functional Molecular Engineering of Guangdong Province, School of Chemistry and Chemical EngineeringSouth China University of Technology Guangzhou 510640 People's Republic of China
| | - Biaolin Yin
- Key Laboratory of Functional Molecular Engineering of Guangdong Province, School of Chemistry and Chemical EngineeringSouth China University of Technology Guangzhou 510640 People's Republic of China
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10
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Samarskaya AS, Cherepanov IA, Godovikov IA, Dmitrienko AO, Moiseev SK, Kalinin VN, Hey-Hawkins E. Synthesis of N-phosphorylated sydnone imines and their functionalization via 4-Li derivatives. Novel bicyclic sydnone imines. Tetrahedron 2018. [DOI: 10.1016/j.tet.2018.04.015] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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11
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de la Concepción JG, Ávalos M, Cintas P, Jiménez JL. Computational Screening of New Orthogonal Metal-Free Dipolar Cycloadditions of Mesomeric Betaines. Chemistry 2018. [PMID: 29534312 DOI: 10.1002/chem.201800869] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Computational strategies have gained increasing impact in the de novo design of large molecular sets targeted to a desired application. Herein, DFT-assisted theoretical analyses of cycloadditions, involving mesoionic dipoles and strained cycloalkynes, unveil a series of unexplored mesomeric betaines as vastly superior candidates for orthogonal applications. Thus, isosydnones; thiosydnones; and a six-membered homolog, 6-oxo-1,3-oxazinium-4-olate, exhibit enhanced reactivity with respect to sydnone, which is the archetypal mesoionic ring employed so far in orthogonal chemistry. These compounds were found by assessing energy barriers and transition structures, which are largely governed by electron fluxes from dipolarophile to dipole and noncovalent interactions. Charge-transfer analysis also accounts for previous experimental and theoretical results gathered in the literature, and provides a rationale for further substitution variations. The above naked dipoles release only CO2 as a byproduct through retro-Diels-Alder of the resulting cycloadducts. These results should invite practitioners to look at such underestimated dipoles and could also help to minimize the number of experiments.
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Affiliation(s)
- Juan García de la Concepción
- Departamento de Química Orgánica e Inorgánica, Facultad de Ciencias, Universidad de Extremadura, Avenida de Elvas S/N, Badajoz, 06006, Spain
| | - Martín Ávalos
- Departamento de Química Orgánica e Inorgánica, Facultad de Ciencias, Universidad de Extremadura, Avenida de Elvas S/N, Badajoz, 06006, Spain
| | - Pedro Cintas
- Departamento de Química Orgánica e Inorgánica, Facultad de Ciencias, Universidad de Extremadura, Avenida de Elvas S/N, Badajoz, 06006, Spain
| | - José Luis Jiménez
- Departamento de Química Orgánica e Inorgánica, Facultad de Ciencias, Universidad de Extremadura, Avenida de Elvas S/N, Badajoz, 06006, Spain
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12
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Decuypère E, Plougastel L, Audisio D, Taran F. Sydnone-alkyne cycloaddition: applications in synthesis and bioconjugation. Chem Commun (Camb) 2018; 53:11515-11527. [PMID: 28959814 DOI: 10.1039/c7cc06405e] [Citation(s) in RCA: 65] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Sydnones are among the most popular mesoionic compounds studied so far for cycloaddition reactions. However, despite their good chemical stability and versatility, only a limited number of research groups have worked on their chemistry and use in organic synthesis. This feature article aims at providing an overview of the most recent developments in sydnone-alkyne cycloadditions, with particular attention on the strategies that allow us to achieving high regiocontrol and milder reaction conditions. The recent discovery that this dipole is able to undergo click and biorthogonal reactions with cycloalkynes may stimulate renewed interest from the scientific community. Given the high potential and flexibility of this family of mesoionics, we believe that major developments are to be expected both in terms of organic synthetic methodologies and biorthogonal chemistry applications in the field of chemical biology.
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Affiliation(s)
- Elodie Decuypère
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM, CEA, Université Paris-Saclay, 91191 Gif-sur-Yvette, France.
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13
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Firoozi N, Torres GM, Arndtsen BA. Palladium Catalyzed, Multicomponent Synthesis of Fused-Ring Pyrroles from Aryl Iodides, Carbon Monoxide, and Alkyne-Tethered Imines. J Org Chem 2016; 81:11145-11152. [PMID: 27726363 DOI: 10.1021/acs.joc.6b02102] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Neda Firoozi
- Department
of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Quebec H3A 0B8, Canada
- Department
of Chemistry, Faculty of Sciences, Ferdowsi University of Mashhad, Mashhad 9177948974, Iran
| | - Gerardo M. Torres
- Department
of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Quebec H3A 0B8, Canada
| | - Bruce A. Arndtsen
- Department
of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Quebec H3A 0B8, Canada
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