1
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Kekec A, Tran LML, Plummer CW, Kalyani D. Late-stage installation and functionalization of alkyl pyridiniums: a general HTE amenable strategy to access diverse aryl alanine containing macrocyclic peptides. Chem Sci 2025:d4sc06837h. [PMID: 39776654 PMCID: PMC11701726 DOI: 10.1039/d4sc06837h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2024] [Accepted: 12/14/2024] [Indexed: 01/11/2025] Open
Abstract
This manuscript describes a strategy to readily access diverse aryl and homoaryl alanine-containing pharmaceutically relevant macrocyclic peptides. A two-step sequence involving the late-stage installation of the pyridinium functionality on macrocyclic peptides followed by reductive couplings was implemented. These transformations are amenable to microscale high-throughput experimentation (HTE) and enable rapid access to aryl alanine-containing macrocyclic peptides that would otherwise be inaccessible via solid-phase peptide synthesis using commercially available amino acids. Numerous aryl and heteroaryl derivatives can be effectively used in these reactions. In addition, a systematic investigation was undertaken using an "informer" set of macrocyclic peptides which revealed the compatibility of the late-stage diversification with peptides containing diverse side chain functionalities.
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Affiliation(s)
- Ahmet Kekec
- Discovery Chemistry, Merck & Co., Inc. Rahway New Jersey 07065 USA
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2
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Hu C, Wen Q, Huang S, Xie S, Fang Y, Jin Y, Campagne R, Alezra V, Miclet E, Zhu J, Wan Y. Gramicidin-S-Inspired Cyclopeptidomimetics as Potent Membrane-Active Bactericidal Agents with Therapeutic Potential. ChemMedChem 2020; 16:368-376. [PMID: 33026182 DOI: 10.1002/cmdc.202000568] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 09/22/2020] [Indexed: 12/27/2022]
Abstract
Antimicrobial peptides (AMPs) are promising antibacterial agents often hindered by their undesired hemolytic activity. Inspired by gramicidin S (GS), a well-known cyclodecapeptide, we synthesized a panel of antibacterial cyclopeptidomimetics using β,γ-diamino acids (β,γ-DiAAs). We observed that peptidomimetic CP-2 displays a bactericidal activity similar to that of GS while possessing lower side-effects. Moreover, extensive studies revealed that CP-2 likely kills bacteria through membrane disruption. Altogether, CP-2 is a promising membrane-active antibiotic with therapeutic potential.
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Affiliation(s)
- Chengfei Hu
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, 1688 Meiling Avenue, WanLi, Nanchang 330004, China
| | - Quan Wen
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, 1688 Meiling Avenue, WanLi, Nanchang 330004, China
| | - Shuhui Huang
- Jiangxi Maternal and Child Hospital, 318 Bayi Avenue, Nanchang, 330006, China
| | - Saisai Xie
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, 1688 Meiling Avenue, WanLi, Nanchang 330004, China
| | - Yuanying Fang
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, 1688 Meiling Avenue, WanLi, Nanchang 330004, China
| | - Yi Jin
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, 1688 Meiling Avenue, WanLi, Nanchang 330004, China
| | - Rémy Campagne
- Laboratoire de Méthodologie, Synthèse et Molécules Thérapeutiques (ICMMO), Université Paris-Sud, UMR 8182, CNRS, Université Paris-Saclay, Bât 410, Facultédes Sciences d'Orsay, Orsay, 291405, France
| | - Valérie Alezra
- Laboratoire de Méthodologie, Synthèse et Molécules Thérapeutiques (ICMMO), Université Paris-Sud, UMR 8182, CNRS, Université Paris-Saclay, Bât 410, Facultédes Sciences d'Orsay, Orsay, 291405, France
| | - Emeric Miclet
- Laboratoire des Biomolécules, Sorbonne Université, PSL University, CNRS, 4 Place Jussieu, Paris, 75005, France
| | - Jinhua Zhu
- Institute of Traditional Chinese Medicine, Jiangxi University of Traditional Chinese Medicine, 1688 Meiling Avenue, WanLi, Nanchang 330004, China
| | - Yang Wan
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, 1688 Meiling Avenue, WanLi, Nanchang 330004, China.,Laboratoire de Méthodologie, Synthèse et Molécules Thérapeutiques (ICMMO), Université Paris-Sud, UMR 8182, CNRS, Université Paris-Saclay, Bât 410, Facultédes Sciences d'Orsay, Orsay, 291405, France
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3
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Ghosh U, Soni I, Kaul G, Trivedi P, Chaturvedi V, Chopra S, Kanti Chakraborty T. Synthesis and Biological Studies of Dodecameric Cationic Antimicrobial Peptides Containing Tetrahydrofuran Amino Acids. Chembiochem 2020; 21:2518-2526. [PMID: 32297461 DOI: 10.1002/cbic.202000163] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2020] [Revised: 04/13/2020] [Indexed: 11/05/2022]
Abstract
We report here a concise route to synthesize various stereoisomers of tetrahydrofuran amino acids (TAAs) and the synthesis of TAA-containing linear cationic dodecapeptides. Some of these linear peptides show slightly better antimicrobial activities than their tetra- and octameric congeners, but no activity against Mycobacterium tuberculosis, for which octapeptides exhibited by far the best results; this implies that antibacterial activity is dependent on the length of these linear peptides. All the dodecapeptides described here were found to be toxic in nature against Vero cells. The study helps to delineate the optimal length of this series of linear peptides and select potential leads in the development of novel cationic peptide-based antibiotics.
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Affiliation(s)
- Uttam Ghosh
- Department of Organic Chemistry, Indian Institution of Science, Bengaluru, 560012, Karnataka, India
| | - Isha Soni
- Division of Microbiology, CSIR-Central Drug Research Institute, Lucknow, 226031, Uttar Pradesh, India
| | - Grace Kaul
- Division of Microbiology, CSIR-Central Drug Research Institute, Lucknow, 226031, Uttar Pradesh, India
| | - Priyanka Trivedi
- Division of Biochemistry, CSIR-Central Drug Research Institute, Lucknow, 226031, Uttar Pradesh, India
| | - Vinita Chaturvedi
- Division of Biochemistry, CSIR-Central Drug Research Institute, Lucknow, 226031, Uttar Pradesh, India
| | - Sidharth Chopra
- Division of Microbiology, CSIR-Central Drug Research Institute, Lucknow, 226031, Uttar Pradesh, India
| | - Tushar Kanti Chakraborty
- Department of Organic Chemistry, Indian Institution of Science, Bengaluru, 560012, Karnataka, India
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4
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Ricardo MG, Vasco AV, Rivera DG, Wessjohann LA. Stabilization of Cyclic β-Hairpins by Ugi-Reaction-Derived N-Alkylated Peptides: The Quest for Functionalized β-Turns. Org Lett 2019; 21:7307-7310. [PMID: 31482710 DOI: 10.1021/acs.orglett.9b02592] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
A solid-phase approach including on-resin Ugi reactions was developed for the construction of β-hairpins. Various N-alkylated dipeptide fragments proved capable of aligning antiparallel β-sheets in a macrocyclic scaffold, thus serving as β-hairpin templates. Gramicidin S was used as the model β-hairpin to compare the Ugi-derived β-turns with the type-II' β-turn. The results show that the multicomponent incorporation of such N-alkylated residues allows for the simultaneous stabilization and exo-cyclic functionalization of cyclic β-hairpins.
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Affiliation(s)
- Manuel G Ricardo
- Department of Bioorganic Chemistry , Leibniz Institute of Plant Biochemistry , Weinberg 3 , 06120 Halle/Saale , Germany.,Center for Natural Products Research, Faculty of Chemistry , University of Havana , Zapata y G , Havana 10400 , Cuba
| | - Aldrin V Vasco
- Department of Bioorganic Chemistry , Leibniz Institute of Plant Biochemistry , Weinberg 3 , 06120 Halle/Saale , Germany
| | - Daniel G Rivera
- Department of Bioorganic Chemistry , Leibniz Institute of Plant Biochemistry , Weinberg 3 , 06120 Halle/Saale , Germany.,Center for Natural Products Research, Faculty of Chemistry , University of Havana , Zapata y G , Havana 10400 , Cuba
| | - Ludger A Wessjohann
- Department of Bioorganic Chemistry , Leibniz Institute of Plant Biochemistry , Weinberg 3 , 06120 Halle/Saale , Germany
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5
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Guan Q, Huang S, Jin Y, Campagne R, Alezra V, Wan Y. Recent Advances in the Exploration of Therapeutic Analogues of Gramicidin S, an Old but Still Potent Antimicrobial Peptide. J Med Chem 2019; 62:7603-7617. [DOI: 10.1021/acs.jmedchem.9b00156] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Qinkun Guan
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, Nanchang 330006, P. R. China
| | - Shuhui Huang
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, Nanchang 330006, P. R. China
- Jiangxi Maternal and Child Hospital, Nanchang 330006, P. R. China
| | - Yi Jin
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, Nanchang 330006, P. R. China
| | - Rémy Campagne
- Faculté des Sciences d’Orsay, Université Paris-Sud, Laboratoire de Méthodologie, Synthèse
et Molécules Thérapeutiques, ICMMO, UMR 8182, CNRS,
Université Paris-Saclay, Bât 410, 91405 Orsay, France
| | - Valérie Alezra
- Faculté des Sciences d’Orsay, Université Paris-Sud, Laboratoire de Méthodologie, Synthèse
et Molécules Thérapeutiques, ICMMO, UMR 8182, CNRS,
Université Paris-Saclay, Bât 410, 91405 Orsay, France
| | - Yang Wan
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, Nanchang 330006, P. R. China
- Faculté des Sciences d’Orsay, Université Paris-Sud, Laboratoire de Méthodologie, Synthèse
et Molécules Thérapeutiques, ICMMO, UMR 8182, CNRS,
Université Paris-Saclay, Bât 410, 91405 Orsay, France
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6
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Singh G, Azmi S, Ghosh JK, Ampapathi RS, Pal S. Synthesis and Conformational Studies of Taa-Containingo-Nitrobenzenesulfonamide- (o-Nosyl-) Protected GS Analogs to Prove the Importance of 6RStereochemistry of Taa over 6S. ChemistrySelect 2018. [DOI: 10.1002/slct.201800003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Gajendra Singh
- NMR Research Centre; Division of SAIF; CSIR-Central Drug Research Institute; Lucknow 226031 India
- Academy of Scientific and Innovative Research; New Delhi 110001 India
| | - Sarfuddin Azmi
- Molecular and Structural Biology Division; CSIR-Central Drug Research Institute; Lucknow 226031 India
- Present Address: Research Centre; Prince Sultan Military Medical City, Riyadh, Kingdom of; Saudi Arabia
| | - Jimut Kanti Ghosh
- Molecular and Structural Biology Division; CSIR-Central Drug Research Institute; Lucknow 226031 India
| | - Ravi Sankar Ampapathi
- NMR Research Centre; Division of SAIF; CSIR-Central Drug Research Institute; Lucknow 226031 India
- Academy of Scientific and Innovative Research; New Delhi 110001 India
| | - Sudip Pal
- Medicinal & Process Chemistry Division; CSIR-Central Drug Research Institute; Lucknow 226031 India
- Department of Chemistry, School of Physical Sciences; Sikkim University (A Central University); Gangtok 737102 India
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7
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Priem C, Wuttke A, Berditsch M, Ulrich AS, Geyer A. Scaling the Amphiphilic Character and Antimicrobial Activity of Gramicidin S by Dihydroxylation or Ketal Formation. J Org Chem 2017; 82:12366-12376. [DOI: 10.1021/acs.joc.7b02177] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Christoph Priem
- Philipps-Universität Marburg, Hans-Meerwein-Straße 4, 35032 Marburg, Germany
| | - André Wuttke
- Philipps-Universität Marburg, Hans-Meerwein-Straße 4, 35032 Marburg, Germany
| | - Marina Berditsch
- Karlsruhe Institute of Technology, Fritz-Haber-Weg 6, 76131 Karlsruhe, Germany
| | - Anne S. Ulrich
- Karlsruhe Institute of Technology, Fritz-Haber-Weg 6, 76131 Karlsruhe, Germany
| | - Armin Geyer
- Philipps-Universität Marburg, Hans-Meerwein-Straße 4, 35032 Marburg, Germany
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8
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Pal S, Ghosh U, Singh G, Alam F, Singh S, Chopra S, Sinha S, Ampapathi RS, Chakraborty TK. Synthesis, Conformational Studies and Biological Profiles of Tetrahydrofuran Amino-Acid-Containing Cationic Antitubercular Peptides. ASIAN J ORG CHEM 2017. [DOI: 10.1002/ajoc.201700183] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Sudip Pal
- Medicinal & Process Chemistry Division; CSIR-Central Drug Research Institute; Lucknow 226031 India
| | - Uttam Ghosh
- Department of Organic Chemistry; Indian Institute of Science; Bangalore 560012 India
| | - Gajendra Singh
- NMR Research Centre, Division of SAIF; CSIR-Central Drug Research Institute; Lucknow 226031 India
- Academy of Scientific and Innovative Research; New Delhi 110001 India
| | - Faiyaz Alam
- NMR Research Centre, Division of SAIF; CSIR-Central Drug Research Institute; Lucknow 226031 India
- Academy of Scientific and Innovative Research; New Delhi 110001 India
| | - Shyam Singh
- Biochemistry Division; CSIR-Central Drug Research Institute; Lucknow 226031 India
| | - Sidharth Chopra
- Microbiology Division; CSIR-Central Drug Research Institute; Lucknow 226031 India
| | - Sudhir Sinha
- Biochemistry Division; CSIR-Central Drug Research Institute; Lucknow 226031 India
| | - Ravi Sankar Ampapathi
- NMR Research Centre, Division of SAIF; CSIR-Central Drug Research Institute; Lucknow 226031 India
- Academy of Scientific and Innovative Research; New Delhi 110001 India
| | - Tushar Kanti Chakraborty
- Medicinal & Process Chemistry Division; CSIR-Central Drug Research Institute; Lucknow 226031 India
- Department of Organic Chemistry; Indian Institute of Science; Bangalore 560012 India
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