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Khalenkow D, Tormo AD, De Meyst A, Van Der Meeren L, Verduijn J, Rybarczyk J, Vanrompay D, Le Thomas N, Skirtach AG. Chlamydia psittaci infected cell studies by 4Pi Raman and atomic force microscopy. Microscopy (Oxf) 2024; 73:335-342. [PMID: 38527311 DOI: 10.1093/jmicro/dfae011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 12/22/2023] [Accepted: 02/15/2024] [Indexed: 03/27/2024] Open
Abstract
Chlamydia psittaci is an avian bacterial pathogen that can cause atypical pneumonia in humans via zoonotic transmission. It is a Gram-negative intracellular bacterium that proliferates inside membrane bound inclusions in the cytoplasm of living eukaryotic cells. The study of such cells with C. psittaci inside without destroying them poses a significant challenge. We demonstrated in this work the utility of a combined multitool approach to analyze such complex samples. Atomic force microscopy was applied to obtain high-resolution images of the surface of infected cells upon entrance of bacteria. Atomic force microscopy scans revealed the morphological changes of the cell membrane of Chlamydia infected cells such as changes in roughness of cell membrane and the presence of micro vesicles. 4Pi Raman microscopy was used to image and probe the molecular composition of intracellular bacteria inside intact cells. Information about the structure of the inclusion produced by C. psittaci was obtained and it was found to have a similar molecular fingerprint as that of an intracellular lipid droplet but with less proteins and unsaturated lipids. The presented approach demonstrates complementarity of various microscopy-based approaches and might be useful for characterization of intracellular bacteria.
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Affiliation(s)
- Dmitry Khalenkow
- Department of Biotechnology, Faculty of Bioscience Engineering, Ghent University, Ghent 9000, Belgium
| | - Alejandro Diaz Tormo
- Photonics Research Group, Department of Information Technology, IMEC & Center for Nano-and Biophotonics, Ghent University, Ghent 9000, Belgium
| | - Anne De Meyst
- Department of Animal Sciences and Aquatic Ecology, Faculty of Bioscience Engineering, Ghent University, Ghent 9000, Belgium
| | - Louis Van Der Meeren
- Department of Biotechnology, Faculty of Bioscience Engineering, Ghent University, Ghent 9000, Belgium
| | - Joost Verduijn
- Department of Biotechnology, Faculty of Bioscience Engineering, Ghent University, Ghent 9000, Belgium
| | - Joanna Rybarczyk
- Department of Animal Sciences and Aquatic Ecology, Faculty of Bioscience Engineering, Ghent University, Ghent 9000, Belgium
| | - Daisy Vanrompay
- Department of Animal Sciences and Aquatic Ecology, Faculty of Bioscience Engineering, Ghent University, Ghent 9000, Belgium
| | - Nicolas Le Thomas
- Photonics Research Group, Department of Information Technology, IMEC & Center for Nano-and Biophotonics, Ghent University, Ghent 9000, Belgium
| | - Andre G Skirtach
- Department of Biotechnology, Faculty of Bioscience Engineering, Ghent University, Ghent 9000, Belgium
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Al‐Kelani M, Buthelezi N. Advancements in medical research: Exploring Fourier Transform Infrared (FTIR) spectroscopy for tissue, cell, and hair sample analysis. Skin Res Technol 2024; 30:e13733. [PMID: 38887131 PMCID: PMC11182784 DOI: 10.1111/srt.13733] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Accepted: 04/24/2024] [Indexed: 06/20/2024]
Abstract
BACKGROUND Fourier Transform Infrared (FTIR) spectroscopy has emerged as a powerful analytical tool in medical research, offering non-invasive and precise examination of the molecular composition of biological samples. The primary objective of this review is to underscore the benefits of FTIR spectroscopy in medicinal research, emphasizing its ability to delineate molecular fingerprints and assist in the identification of biochemical structures and key peaks in biological samples. METHODS This review comprehensively explores the diverse applications of FTIR spectroscopy in medical investigations, with a specific focus on its utility in analyzing tissue, cells, and hair samples. Various sources, including Google Scholar, PubMed, WorledCat and Scopus, were utilized to conduct this comprehensive literature review. RESULTS Recent advancements showcase the versatility of FTIR spectroscopy in elucidating cellular and molecular processes, facilitating disease diagnostics, and enabling treatment monitoring. Notably, FTIR spectroscopy has found significant utility in clinical assessment, particularly in screening counterfeit medicines, owing to its user-friendly operation and minimal sample preparation requirements. Furthermore, customs officials can leverage this technique for preliminary analysis of suspicious samples. CONCLUSION This review aims to bridge a gap in the literature and serve as a valuable resource for future research endeavors in FTIR spectroscopy within the medical domain. Additionally, it presents fundamental concepts of FTIR spectroscopy and spectral data interpretation, highlighting its utility as a tool for molecular analysis using Mid-Infrared (MIR) radiation.
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Affiliation(s)
- Madeha Al‐Kelani
- Hair and Skin Research LaboratoryDivision of DermatologyGroote Schuur HospitalCape TownSouth Africa
- Faculty of Health SciencesUniversity of Cape TownCape TownSouth Africa
| | - Ntandoyenkosi Buthelezi
- Hair and Skin Research LaboratoryDivision of DermatologyGroote Schuur HospitalCape TownSouth Africa
- Faculty of Health SciencesUniversity of Cape TownCape TownSouth Africa
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De Santis E, Faruqui N, Russell CT, Noble JE, Kepiro IE, Hammond K, Tsalenchuk M, Ryadnov EM, Wolna M, Frogley MD, Price CJ, Barbaric I, Cinque G, Ryadnov MG. Hyperspectral Mapping of Human Primary and Stem Cells at Cell-Matrix Interfaces. ACS APPLIED MATERIALS & INTERFACES 2024; 16:2154-2165. [PMID: 38181419 DOI: 10.1021/acsami.3c17113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/07/2024]
Abstract
Extracellular matrices interface with cells to promote cell growth and tissue development. Given this critical role, matrix mimetics are introduced to enable biomedical materials ranging from tissue engineering scaffolds and tumor models to organoids for drug screening and implant surface coatings. Traditional microscopy methods are used to evaluate such materials in their ability to support exploitable cell responses, which are expressed in changes in cell proliferation rates and morphology. However, the physical imaging methods do not capture the chemistry of cells at cell-matrix interfaces. Herein, we report hyperspectral imaging to map the chemistry of human primary and embryonic stem cells grown on matrix materials, both native and artificial. We provide the statistical analysis of changes in lipid and protein content of the cells obtained from infrared spectral maps to conclude matrix morphologies as a major determinant of biochemical cell responses. The study demonstrates an effective methodology for evaluating bespoke matrix materials directly at cell-matrix interfaces.
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Affiliation(s)
| | - Nilofar Faruqui
- National Physical Laboratory, Hampton Road, Teddington TW11 0LW, U.K
| | - Craig T Russell
- EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, U.K
| | - James E Noble
- National Physical Laboratory, Hampton Road, Teddington TW11 0LW, U.K
| | - Ibolya E Kepiro
- National Physical Laboratory, Hampton Road, Teddington TW11 0LW, U.K
| | - Katharine Hammond
- National Physical Laboratory, Hampton Road, Teddington TW11 0LW, U.K
| | - Maria Tsalenchuk
- UK Dementia Research Institute, Imperial College London, London W12 0BZ, U.K
| | - Eugeni M Ryadnov
- Institute of Neurology, University College London, Queen Square, London WC1N 3BG, U.K
| | - Magda Wolna
- Diamond Light Source Ltd., Chilton-Didcot, Oxfordshire OX11 0DE, U.K
| | - Mark D Frogley
- Diamond Light Source Ltd., Chilton-Didcot, Oxfordshire OX11 0DE, U.K
| | | | - Ivana Barbaric
- School of Biosciences, University of Sheffield, Sheffield S10 2TN, U.K
| | - Gianfelice Cinque
- Diamond Light Source Ltd., Chilton-Didcot, Oxfordshire OX11 0DE, U.K
| | - Maxim G Ryadnov
- National Physical Laboratory, Hampton Road, Teddington TW11 0LW, U.K
- Department of Physics, King's College London, London WC2R 2LS, U.K
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Teker HT, Ceylani T, Keskin S, Samgane G, Mansuroglu S, Baba B, Allahverdi H, Acıkgoz E, Gurbanov R. Age-related differences in response to plasma exchange in male rat liver tissues: insights from histopathological and machine-learning assisted spectrochemical analyses. Biogerontology 2023:10.1007/s10522-023-10032-3. [PMID: 37017896 DOI: 10.1007/s10522-023-10032-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2023] [Accepted: 03/27/2023] [Indexed: 04/06/2023]
Abstract
This study aimed to examine the biological effects of blood plasma exchange in liver tissues of aged and young rats using machine learning methods and spectrochemical and histopathological approaches. Linear Discriminant Analysis (LDA) and Support Vector Machine (SVM) were the machine learning algorithms employed. Young plasma was given to old male rats (24 months), while old plasma was given to young male rats (5 weeks) for thirty days. LDA (95.83-100%) and SVM (87.5-91.67%) detected significant qualitative changes in liver biomolecules. In old rats, young plasma infusion increased the length of fatty acids, triglyceride, lipid carbonyl, and glycogen levels. Nucleic acid concentration, phosphorylation, and carbonylation rates of proteins were also increased, whereas a decrease in protein concentration was measured. Aged plasma decreased protein carbonylation, triglyceride, and lipid carbonyl levels. Young plasma infusion improved hepatic fibrosis and cellular degeneration and reduced hepatic microvesicular steatosis in aged rats. Otherwise, old plasma infusion in young rats caused disrupted cellular organization, steatosis, and increased fibrosis. Young plasma administration increased liver glycogen accumulation and serum albumin levels. Aged plasma infusion raised serum ALT levels while diminished ALP concentrations in young rats, suggesting possible liver dysfunction. Young plasma increased serum albumin levels in old rats. The study concluded that young plasma infusion might be associated with declined liver damage and fibrosis in aged rats, while aged plasma infusion negatively impacted liver health in young rats. These results imply that young blood plasma holds potential as a rejuvenation therapy for liver health and function.
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Affiliation(s)
- Hikmet Taner Teker
- Department of Medical Biology and Genetics, Ankara Medipol University, Ankara, Turkey
| | - Taha Ceylani
- Department of Molecular Biology and Genetics, Muş Alparslan University, Muş, Turkey
- Department of Food Quality Control and Analysis, Muş Alparslan University, Muş, Turkey
| | - Seda Keskin
- Department of Histology and Embryology, Van Yuzuncu Yil University, Van, Turkey
| | - Gizem Samgane
- Department of Bioengineering, Bilecik Şeyh Edebali University, Bilecik, Turkey
| | - Sina Mansuroglu
- Department of Bioengineering, Bilecik Şeyh Edebali University, Bilecik, Turkey
| | - Burcu Baba
- Department of Medical Biochemistry, Yüksek İhtisas University, Ankara, Turkey
| | - Huseyin Allahverdi
- Department of Molecular Biology and Genetics, Muş Alparslan University, Muş, Turkey
| | - Eda Acıkgoz
- Department of Histology and Embryology, Van Yuzuncu Yil University, Van, Turkey
| | - Rafig Gurbanov
- Department of Bioengineering, Bilecik Şeyh Edebali University, Bilecik, Turkey.
- Central Research Laboratory, Bilecik Şeyh Edebali University, Bilecik, Turkey.
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Synchrotron Infrared Microspectroscopy for Stem Cell Research. Int J Mol Sci 2022; 23:ijms23179878. [PMID: 36077277 PMCID: PMC9456088 DOI: 10.3390/ijms23179878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Revised: 08/23/2022] [Accepted: 08/23/2022] [Indexed: 11/30/2022] Open
Abstract
Stem cells have shown great potential functions for tissue regeneration and repair because of their unlimited self-renewal and differentiation. Stem cells reside in their niches, making them a hotspot for the development and diagnosis of diseases. Complex interactions between niches and stem cells create the balance between differentiation, self-renewal, maturation, and proliferation. However, the multi-facet applications of stem cells have been challenged since the complicated responses of stem cells to biological processes were explored along with the limitations of current systems or methods. Emerging evidence highlights that synchrotron infrared microspectroscopy, known as synchrotron radiation-based Fourier transform infrared microspectroscopy, has been investigated as a potentially attractive technology with its non-invasive and non-biological probes in stem cell research. With their unique vibration bands, the quantitative mapping of the content and distribution of biomolecules can be detected and characterized in cells or tissues. In this review, we focus on the potential applications of synchrotron infrared microspectroscopy for investigating the differentiation and fate determination of stem cells.
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Ceylani T, Teker HT, Samgane G, Gurbanov R. Intermittent fasting-induced biomolecular modifications in rat tissues detected by ATR-FTIR spectroscopy and machine learning algorithms. Anal Biochem 2022; 654:114825. [DOI: 10.1016/j.ab.2022.114825] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2022] [Revised: 07/17/2022] [Accepted: 07/18/2022] [Indexed: 12/16/2022]
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Fourier Transform Infrared Imaging-A Novel Approach to Monitor Bio Molecular Changes in Subacute Mild Traumatic Brain Injury. Brain Sci 2021; 11:brainsci11070918. [PMID: 34356152 PMCID: PMC8307811 DOI: 10.3390/brainsci11070918] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2020] [Revised: 06/28/2021] [Accepted: 07/02/2021] [Indexed: 11/26/2022] Open
Abstract
Traumatic brain injury (TBI) can be defined as a disorder in the function of the brain after a bump, blow, or jolt to the head, or penetrating head injury. Mild traumatic brain injury (mTBI) can cause devastating effects, such as the initiation of long-term neurodegeneration in brain tissue. In the current study, the effects of mTBI were investigated on rat brain regions; cortex (Co) and corpus callosum (CC) after 24 h (subacute trauma) by Fourier transform infrared (FTIR) imaging and immunohistochemistry (IHC). IHC studies showed the formation of amyloid-β (Aβ) plaques in the cortex brain region of mTBI rats. Moreover, staining of myelin basic protein presented the shearing of axons in CC region in the same group of animals. According to FTIR imaging results, total protein and lipid content significantly decreased in both Co and CC regions in mTBI group compared to the control. Due to this significant decrease in both lipid and protein content, remarkable consistency in lipid/protein band ratio in mTBI and control group, was observed. Significant decrease in methyl content and a significant increase in olefinic content were observed in Co and CC regions of mTBI rat brain tissues. Classification amongst distinguishable groups was performed using principal component analysis (PCA) and hierarchical clustering (HCA). This study established the prospective of FTIR imaging for assessing biochemical changes due to mTBI with high sensitivity, precision and high-resolution.
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Preparation and characterization of amnion hydrogel and its synergistic effect with adipose derived stem cells towards IL1β activated chondrocytes. Sci Rep 2020; 10:18751. [PMID: 33127964 PMCID: PMC7603317 DOI: 10.1038/s41598-020-75921-w] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Accepted: 10/13/2020] [Indexed: 12/29/2022] Open
Abstract
Inflammation leads to chondrocyte senescence and cartilage degeneration, resulting in osteoarthritis (OA). Adipose‐derived stem cells (ADSCs) exert paracrine effects protecting chondrocytes from degenerative changes. However, the lack of optimum delivery systems for ADSCs limits its use in the clinic. The use of extracellular matrix based injectable hydrogels has gained increased attention due to their unique properties. In the present study, we developed hydrogels from amnion tissue as a delivery system for ADSCs. We investigated the potential of amnion hydrogel to maintain ADSC functions, the synergistic effect of AM with ADSC in preventing the catabolic responses of inflammation in stimulated chondrocytes. We also investigated the role of Wnt/β-catenin signaling pathway in IL-1β induced inflammation in chondrocytes and the ability of AM-ADSC to inhibit Wnt/β-catenin signaling. Our results showed that AM hydrogels supported cell viability, proliferation, and stemness. ADSCs, AM hydrogels and AM-ADSCs inhibited the catabolic responses of IL-1β and inhibited the Wnt/β-catenin signaling pathway, indicating possible involvement of Wnt/β-catenin signaling pathways in IL-1β induced inflammation. The results also showed that the synergistic effect of AM-ADSCs was more pronounced in preventing catabolic responses in activated chondrocytes. In conclusion, we showed that AM hydrogels can be used as a potential carrier for ADSCs, and can be developed as a potential therapeutic agent for treating OA.
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