Water quality in South San Francisco Bay, California: current condition and potential issues for the South Bay Salt Pond Restoration Project

Relationships between Microbial Indicators and Pathogens in Recreational Water Settings

Fecal pollution of recreational waters can cause scenic blight and pose a threat to public health, resulting in beach advisories and closures. Fecal indicator bacteria (total and fecal coliforms, Escherichia coli, and enterococci), and alternative indicators of fecal pollution (Clostridium perfringens and bacteriophages) are routinely used in the assessment of sanitary quality of recreational waters. However, fecal indicator bacteria (FIB), and alternative indicators are found in the gastrointestinal tract of humans, and many other animals and therefore are considered general indicators of fecal pollution. As such, there is room for improvement in terms of their use for informing risk assessment and remediation strategies. Microbial source tracking (MST) genetic markers are closely associated with animal hosts and are used to identify fecal pollution sources. In this review, we examine 73 papers generated over 40 years that reported the relationship between at least one indicator and one pathogen group or species. Nearly half of the reports did not include statistical analysis, while the remainder were almost equally split between those that observed statistically significant relationships and those that did not. Statistical significance was reported less frequently in marine and brackish waters compared to freshwater, and the number of statistically significant relationships was considerably higher in freshwater (p < 0.0001). Overall, significant relationships were more commonly reported between FIB and pathogenic bacteria or protozoa, compared to pathogenic viruses (p: 0.0022⁻0.0005), and this was more pronounced in freshwater compared to marine. Statistically significant relationships were typically noted following wet weather events and at sites known to be impacted by recent fecal pollution. Among the studies that reported frequency of detection, FIB were detected most consistently, followed by alternative indicators. MST markers and the three pathogen groups were detected least frequently. This trend was mirrored by reported concentrations for each group of organisms (FIB > alternative indicators > MST markers > pathogens). Thus, while FIB, alternative indicators, and MST markers continue to be suitable indicators of fecal pollution, their relationship with waterborne pathogens, particularly viruses, is tenuous at best and influenced by many different factors such as frequency of detection, variable shedding rates, differential fate and transport characteristics, as well as a broad range of site-specific factors such as the potential for the presence of a complex mixture of multiple sources of fecal contamination and pathogens.

Predictors of mercury spatial patterns in San Francisco Bay forage fish

Pollution reduction efforts should be targeted toward those sources that result in the highest bioaccumulation. For mercury (Hg) in estuaries and other complex water bodies, carefully designed biosentinel monitoring programs can help identify predictors of bioaccumulation and inform management priorities for source reduction. This study employed a probabilistic forage fish Hg survey with hypothesis testing in San Francisco Bay (California, USA). The goal was to determine what pollution sources, regions, and landscape features were associated with elevated Hg bioaccumulation. Across 99 sites, whole-body Hg concentrations in Mississippi silversides (Menidia audens) and topsmelt (Atherinops affinis) followed a broad spatial gradient, declining with distance from the Guadalupe River (Pearson's r = -0.69 and -0.42, respectively), which drains historic mining areas. Site landscape attributes and local Hg sources had subtle effects, which differed between fish species. Topsmelt Hg increased in embayment sites (i.e., enclosed sites including channels, creek mouths, marinas, and coves) and sites with historic Hg-contaminated sediment, suggesting an influence of legacy industrial and mining contamination. In 2008, Mississippi silverside Hg was reduced at sites draining wastewater-treatment plants. Fish Hg was not related to abundance of surrounding wetland cover but was elevated in some watersheds draining from historic Hg-mining operations. Results indicated both regional and site-specific influences for Hg bioaccumulation in San Francisco Bay, including legacy contamination and proximity to treated wastewater discharge.

Seasonal and annual trends in forage fish mercury concentrations, San Francisco Bay

San Francisco Bay is contaminated by mercury (Hg) due to historic and ongoing sources, and has elevated Hg concentrations throughout the aquatic food web. We monitored Hg in forage fish to indicate seasonal and interannual variations and trends. Interannual variation and long-term trends were determined by monitoring Hg bioaccumulation during September-November, for topsmelt (Atherinops affinis) and Mississippi silverside (Menidia audens) at six sites, over six years (2005 to 2010). Seasonal variation was characterized for arrow goby (Clevelandia ios) at one site, topsmelt at six sites, and Mississippi silverside at nine sites. Arrow goby exhibited a consistent seasonal pattern from 2008 to 2010, with lowest concentrations observed in late spring, and highest concentrations in late summer or early fall. In contrast, topsmelt concentrations tended to peak in late winter or early spring and silverside seasonal fluctuations varied among sites. The seasonal patterns may relate to seasonal shifts in net MeHg production in the contrasting habitats of the species. Topsmelt exhibited an increase in Alviso Slough from 2005 to 2010, possibly related to recent hypoxia in that site. Otherwise, directional trends for Hg in forage fish were not observed. For topsmelt and silverside, the variability explained by year was relatively low compared to sampling station, suggesting that interannual variation is not a strong influence on Hg concentrations. Although fish Hg has shown long-term declines in some ecosystems around the world, San Francisco Bay forage fish did not decline over the six-year monitoring period examined.