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Kundu K, Melsbach A, Heckel B, Schneidemann S, Kanapathi D, Marozava S, Merl-Pham J, Elsner M. Linking Increased Isotope Fractionation at Low Concentrations to Enzyme Activity Regulation: 4-Cl Phenol Degradation by Arthrobacter chlorophenolicus A6. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:3021-3032. [PMID: 35148097 PMCID: PMC8892832 DOI: 10.1021/acs.est.1c04939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Revised: 01/23/2022] [Accepted: 01/26/2022] [Indexed: 06/14/2023]
Abstract
Slow microbial degradation of organic trace chemicals ("micropollutants") has been attributed to either downregulation of enzymatic turnover or rate-limiting substrate supply at low concentrations. In previous biodegradation studies, a drastic decrease in isotope fractionation of atrazine revealed a transition from rate-limiting enzyme turnover to membrane permeation as a bottleneck when concentrations fell below the Monod constant of microbial growth. With degradation of the pollutant 4-chlorophenol (4-CP) by Arthrobacter chlorophenolicus A6, this study targeted a bacterium which adapts its enzyme activity to concentrations. Unlike with atrazine degradation, isotope fractionation of 4-CP increased at lower concentrations, from ε(C) = -1.0 ± 0.5‰ in chemostats (D = 0.090 h-1, 88 mg L-1) and ε(C) = -2.1 ± 0.5‰ in batch (c0 = 220 mg L-1) to ε(C) = -4.1 ± 0.2‰ in chemostats at 90 μg L-1. Surprisingly, fatty acid composition indicated increased cell wall permeability at high concentrations, while proteomics revealed that catabolic enzymes (CphCI and CphCII) were differentially expressed at D = 0.090 h-1. These observations support regulation on the enzyme activity level─through either a metabolic shift between catabolic pathways or decreased enzymatic turnover at low concentrations─and, hence, reveal an alternative end-member scenario for bacterial adaptation at low concentrations. Including more degrader strains into this multidisciplinary analytical approach offers the perspective to build a knowledge base on bottlenecks of bioremediation at low concentrations that considers bacterial adaptation.
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Affiliation(s)
- Kankana Kundu
- Institute
of Groundwater Ecology, Helmholtz Zentrum
Munchen, Ingolstadter
Landstraße 1, 85764 Neuherberg, Bavaria, Germany
- Center
for Microbial Ecology and Technology (CMET), Faculty of Bioscience
Engineering, University of Ghent, Coupure Links 653, 9000 Ghent, Belgium
| | - Aileen Melsbach
- Institute
of Groundwater Ecology, Helmholtz Zentrum
Munchen, Ingolstadter
Landstraße 1, 85764 Neuherberg, Bavaria, Germany
- Chair
of Analytical Chemistry and Water Chemistry, Technical University of Munich, Lichtenbergstr. 4, D-85748 Garching, Germany
| | - Benjamin Heckel
- Institute
of Groundwater Ecology, Helmholtz Zentrum
Munchen, Ingolstadter
Landstraße 1, 85764 Neuherberg, Bavaria, Germany
| | - Sarah Schneidemann
- Institute
of Groundwater Ecology, Helmholtz Zentrum
Munchen, Ingolstadter
Landstraße 1, 85764 Neuherberg, Bavaria, Germany
| | - Dheeraj Kanapathi
- Institute
of Groundwater Ecology, Helmholtz Zentrum
Munchen, Ingolstadter
Landstraße 1, 85764 Neuherberg, Bavaria, Germany
| | - Sviatlana Marozava
- Institute
of Groundwater Ecology, Helmholtz Zentrum
Munchen, Ingolstadter
Landstraße 1, 85764 Neuherberg, Bavaria, Germany
| | - Juliane Merl-Pham
- Core
Facility Proteomics, Helmholtz Zentrum München, Heidemannstr. 1, 80939 Munich, Germany
| | - Martin Elsner
- Institute
of Groundwater Ecology, Helmholtz Zentrum
Munchen, Ingolstadter
Landstraße 1, 85764 Neuherberg, Bavaria, Germany
- Chair
of Analytical Chemistry and Water Chemistry, Technical University of Munich, Lichtenbergstr. 4, D-85748 Garching, Germany
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Kurdziel K, Raczyńska-Żak M, Kolbus A. Removal of Phenol and Monochlorophenols Pollution from Aqueous Solutions with HDTMA-Modified Halloysite. SOLVENT EXTRACTION AND ION EXCHANGE 2020. [DOI: 10.1080/07366299.2020.1848410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
| | | | - Anna Kolbus
- Institute of Chemistry, Jan Kochanowski University, Kielce, Poland
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de Carvalho CCCR, Fischer MA, Kirsten S, Würz B, Wick LY, Heipieper HJ. Adaptive response of Rhodococcus opacus PWD4 to salt and phenolic stress on the level of mycolic acids. AMB Express 2016; 6:66. [PMID: 27620730 PMCID: PMC5016484 DOI: 10.1186/s13568-016-0241-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2016] [Accepted: 09/02/2016] [Indexed: 11/30/2022] Open
Abstract
Mycolata form a group of Gram-positive bacteria with unique cell envelope structures that are known for their high tolerance against antibiotics and both aromatic and aliphatic hydrocarbons. An important part of the unique surface structure of the mycolata is the presence of long chain α-alkyl-β-hydroxy fatty acids, the mycolic acids. In order to investigate the adaptive changes in the mycolic acid composition, we investigated the composition of mycolic acids during the response both to osmotic stress caused by NaCl and to 4-chlorophenol in Rhodococcus opacus PWD4. This bacterium was chosen as it is known to adapt to different kinds of stresses. In addition, it is a potential biocatalyst in bioremediation as well as for biotechnological applications. In the present study, cells of R. opacus PWD4, grown in liquid cultures, responded to toxic concentrations of NaCl by increasing the ratio between mycolic acids and membrane phospholipid fatty acids (MA/PLFA-ratio). Cells reacted to both NaCl and 4-chlorophenol by decreasing both the average chain length and the unsaturation index of their mycolic acids. These changes in mycolic acid composition correlated with increases in cell surface hydrophobicity and saturation of membrane fatty acids, demonstrating the relation between mycolic acid and phospholipid synthesis and their contribution to cell surface properties of R. opacus PWD4.
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Shape-controlled synthesis of one-dimensional α-MnO 2 nanocrystals for organic detection and pollutant degradation. Sep Purif Technol 2016. [DOI: 10.1016/j.seppur.2016.01.050] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Igbinosa EO, Odjadjare EE, Chigor VN, Igbinosa IH, Emoghene AO, Ekhaise FO, Igiehon NO, Idemudia OG. Toxicological profile of chlorophenols and their derivatives in the environment: the public health perspective. ScientificWorldJournal 2013; 2013:460215. [PMID: 23690744 PMCID: PMC3649668 DOI: 10.1155/2013/460215] [Citation(s) in RCA: 128] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2013] [Accepted: 03/06/2013] [Indexed: 11/18/2022] Open
Abstract
Chlorophenol compounds and their derivatives are ubiquitous contaminants in the environment. These compounds are used as intermediates in manufacturing agricultural chemicals, pharmaceuticals, biocides, and dyes. Chlorophenols gets into the environment from a variety of sources such as industrial waste, pesticides, and insecticides, or by degradation of complex chlorinated hydrocarbons. Thermal and chemical degradation of chlorophenols leads to the formation of harmful substances which constitute public health problems. These compounds may cause histopathological alterations, genotoxicity, mutagenicity, and carcinogenicity amongst other abnormalities in humans and animals. Furthermore, the recalcitrant nature of chlorophenolic compounds to degradation constitutes an environmental nuisance, and a good understanding of the fate and transport of these compounds and their derivatives is needed for a clearer view of the associated risks and mechanisms of pathogenicity to humans and animals. This review looks at chlorophenols and their derivatives, explores current research on their effects on public health, and proffers measures for mitigation.
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Affiliation(s)
- Etinosa O Igbinosa
- Department of Microbiology, Faculty of Life Sciences, University of Benin, PMB 1154, Benin City, Nigeria.
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Ertürk MD, Saçan MT, Novic M, Minovski N. Quantitative structure–activity relationships (QSARs) using the novel marine algal toxicity data of phenols. J Mol Graph Model 2012; 38:90-100. [DOI: 10.1016/j.jmgm.2012.06.002] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2011] [Revised: 05/21/2012] [Accepted: 06/13/2012] [Indexed: 11/28/2022]
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Ertürk MD, Saçan MT. First toxicity data of chlorophenols on marine alga Dunaliella tertiolecta: correlation of marine algal toxicity with hydrophobicity and interspecies toxicity relationships. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2012; 31:1113-1120. [PMID: 22362598 DOI: 10.1002/etc.1782] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2011] [Revised: 09/12/2011] [Accepted: 12/30/2011] [Indexed: 05/31/2023]
Abstract
The toxicity of phenol and 13 chlorinated phenols to the marine alga Dunaliella tertiolecta is presented for the first time. The newly generated marine algal toxicity data was found to correlate strongly with the widely used hydrophobicity parameter-the logarithm of the n-octanol-water partition coefficient (log K(OW)). Interspecies relationships using the new marine algal toxicity data of chlorophenols with the previously published data on bacterium (Vibrio fischeri), protozoan (Tetrahymena pyriformis), daphnid (Daphnia magna), freshwater alga (Pseudokirchneriella subcapitata), and fish (Pimephales promelas) revealed promising results that could be exploited in extrapolations using freshwater data to predict marine algal toxicity.
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Affiliation(s)
- M Doğa Ertürk
- Institute of Environmental Sciences, Bogazici University, Bebek, Istanbul, Turkey.
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Treviño-Quintanilla LG, Freyre-González JA, Guillén-Garcés RA, Olvera C. Molecular characterization of chloranilic acid degradation in Pseudomonas putida TQ07. J Microbiol 2011; 49:974-80. [PMID: 22203561 DOI: 10.1007/s12275-011-1507-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2011] [Accepted: 11/24/2011] [Indexed: 11/25/2022]
Abstract
Pentachlorophenol is the most toxic and recalcitrant chlorophenol because both aspects are directly proportional to the halogenation degree. Biological and abiotic pentachlorophenol degradation generates p-chloranil, which in neutral to lightly alkaline environmental conditions is hydrolyzed to chloranilic acid that present a violet-reddish coloration in aqueous solution. Several genes of the degradation pathway, cadR-cadCDX, as well as other uncharacterized genes (ORF5 and 6), were isolated from a chloranilic acid degrading bacterium, Pseudomonas putida strain TQ07. The disruption by random mutagenesis of the cadR and cadC genes in TQ07 resulted in a growth deficiency in the presence of chloranilic acid, indicating that these genes are essential for TQ07 growth with chloranilic acid as the sole carbon source. Complementation assays demonstrated that a transposon insertion in mutant CAD82 (cadC) had a polar effect on other genes contained in cosmid pLG3562. These results suggest that at least one of these genes, cadD and cadX, also takes part in chloranilic acid degradation. Based on molecular modeling and function prediction, we strongly suggest that CadC is a pyrone dicarboxylic acid hydrolase and CadD is an aldolase enzyme like dihydrodipicolinate synthase. The results of this study allowed us to propose a novel pathway that offers hypotheses on chloranilic acid degradation (an abiotic by-product of pentachlorophenol) by means of a very clear phenotype that is narrowly related to the capability of Pseudomonas putida strain TQ07 to degrade this benzoquinone.
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Affiliation(s)
- Luis G Treviño-Quintanilla
- Departamento de Tecnología Ambiental, Universidad Politécnica del Estado de Morelos, Blvd. Cuauhnáhuac 566, Col. Lomas del Texcal, 62550 Jiutepec, Morelos, México.
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Hernke MT, Podein RJ. Sustainability, health and precautionary perspectives on lawn pesticides, and alternatives. ECOHEALTH 2011; 8:223-232. [PMID: 21912988 DOI: 10.1007/s10393-011-0697-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2010] [Revised: 08/15/2011] [Accepted: 08/15/2011] [Indexed: 05/31/2023]
Abstract
This article considers health concerns associated with lawn pesticide use and potential policy actions to address those concerns. We first briefly present the generations of pesticide technology, and then apply a sustainability lens to consider the dissipative use of persistent compounds. We enumerate uncertainties in available science and gaps in toxicity testing of pesticides, along with potential for exposure and evidence of harm from lawn pesticide exposure. We consider how a precautionary approach complements a sustainability perspective and detailed scientific findings, and then briefly present practical approaches to reducing use of lawn pesticides. Finally, we highlight factors pivotal for successful policy to limit lawn pesticide use.
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Affiliation(s)
- Michael T Hernke
- Department of Operations & Information Management, University of Wisconsin-Madison, School of Business, 975 University Ave., Madison, WI, 53706, USA.
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Puglisi E, Vernile P, Bari G, Spagnuolo M, Trevisan M, Lillo ED, Ruggiero P. Bioaccessibility, bioavailability and ecotoxicity of pentachlorophenol in compost amended soils. CHEMOSPHERE 2009; 77:80-86. [PMID: 19539347 DOI: 10.1016/j.chemosphere.2009.05.022] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2009] [Revised: 05/12/2009] [Accepted: 05/15/2009] [Indexed: 05/27/2023]
Abstract
The influence of compost on the bioaccessibility, bioavailability and ecotoxicity of pentachlorophenol (PCP) as a function of time was studied by means of different chemical and ecotoxicological methods. Experiments were conducted in both sterile and non-sterile microcosms and samplings carried out at 20, 60 and 120d from initial contamination. PCP bioaccessibility, assessed by means of Porapak resin extraction, was around 75% of the applied dose with no aging or compost effects. Two different methods were applied to assess the bioavailability of PCP, respectively, to bacteria and earthworms and linked to ecotoxicological assays (biosensor and earthworm coelomocytes assays). Water extraction was applied to assess the bioavailability to bacteria: results showed that this fraction was always below 50%, with significant decreases as a result of aging processes and compost addition. In non-sterile microcosms, compost amendment increased the amount of PCP biodegraded, while the ecotoxicological assay with the biosensor Pseudomonas fluorescens pUCD607 indicated a higher toxicity in the most degraded samples, thus suggesting the formation of more toxic metabolites. Earthworm body accumulation results were rather in accordance with water extractions data, with decreasing bioavailable amounts as a result of time and compost addition. No compost or aging effects were instead detected by coelomocytes assay. Results indicate how different methods must be applied altogether to assess the bioavailability and ecotoxicity of xenobiotics such as PCP in soil. The addition of compost was also proven as an effective strategy for the remediation of PCP contaminated soils, although issues related to the possible formation of toxic metabolites must be taken into account.
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Affiliation(s)
- Edoardo Puglisi
- Istituto di Chimica Agraria ed Ambientale, Università Cattolica del Sacro Cuore, Piacenza, Italy
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Longoria A, Tinoco R, Vázquez-Duhalt R. Chloroperoxidase-mediated transformation of highly halogenated monoaromatic compounds. CHEMOSPHERE 2008; 72:485-490. [PMID: 18439646 DOI: 10.1016/j.chemosphere.2008.03.006] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2007] [Revised: 03/02/2008] [Accepted: 03/03/2008] [Indexed: 05/26/2023]
Abstract
Peroxidase transformations of widely distributed pollutants, tetra- and penta-chlorinated phenols and anilines, were studied using different peroxidases. Chloroperoxidase from Caldariomyces fumago was able to transform tetra- and penta-chlorinated phenols and anilines, while horseradish peroxidase, lignin peroxidase from Phanerochaete chrysosporium and versatile peroxidase from Bjerkandera adusta were able only to transform the halogenated phenols. Chloroperoxidase showed a specific activity on pentachlorophenol two orders of magnitude higher than lignin peroxidase and horseradish peroxidase, and one order of magnitude higher than versatile peroxidase. The main product from peroxidase oxidation in all cases was a polymeric and insoluble material. The insolubilization of halogenated phenols and anilines permits their removal, reduces their bioavailability, and thus reduces their environmental impact. The other minor products from the enzymatic transformation of highly chlorinated compounds were determined by mass spectrometry. Tetrachloroquinone, dimers and trimers of halogenated compounds were also identified. Chloroperoxidase was able to halogenate tetrachloroaniline to form pentachloroaniline.
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Affiliation(s)
- Adriana Longoria
- Instituto de Biotecnología, Universidad Nacional Autónoma de México, Apartado Postal 510-3, Cuernavaca, Morelos 62250, Mexico
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Bergknut M, Persson P, Skyllberg U. Molecular characterization of brominated persistent pollutants using extended X-ray absorption fine structure (EXAFS) spectroscopy. Anal Bioanal Chem 2007; 390:921-8. [DOI: 10.1007/s00216-007-1721-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2007] [Revised: 10/17/2007] [Accepted: 10/23/2007] [Indexed: 11/30/2022]
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Laurent F, Canlet C, Debrauwer L, Pascal-Lorber S. Metabolic fate of [(14)C]-2,4-dichlorophenol in tobacco cell suspension cultures. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2007; 26:2299-307. [PMID: 17941740 DOI: 10.1897/07-036r.1] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2007] [Accepted: 05/31/2007] [Indexed: 05/25/2023]
Abstract
In plant tissues, xenobiotics often are conjugated with natural constituents such as sugars, amino acids, glutathione, and malonic acid. Usually, conjugation processes result in a decrease in the reactivity and toxicity of xenobiotics by increasing the water solubility and polarity of conjugates, and reducing their mobility. Due to their lack of an efficient excretory system, xenobiotic conjugates finally are sequestered in plant storage compartments or cell vacuoles, or are integrated as bound residues in cell walls. Chlorophenols are potentially harmful pollutants that are found in numerous natural and agricultural systems. We studied the metabolic fate of 2,4-dichlorophenol (DCP) in cell-suspension cultures of tobacco (Nicotiana tabacum L.). After a standard metabolism experiment, 48 h of incubation with a [U-phenyl-(14)C]-DCP solution, aqueous extracts of cell suspension cultures were analyzed by high-performance liquid chromatography (HPLC). Metabolites then were isolated and their chemical structures determined by enzymatic and chemical hydrolyses, electrospray ionization-mass spectrometry in negative mode (ESI-NI), and (1)H nuclear magnetic resonance analyses. The main terminal metabolites identified were DCP-glycoside conjugates, DCP-(6-O-malonyl)-glucoside, DCP-(6-O-acetyl)-glucoside, and their precursor, DCP-glucoside. More unusual and complex DCP conjugates such as an alpha(1-->6)-glucosyl-pentose and a triglycoside containing a glucuronic acid were further characterized. All the metabolites identified were complex glycoside conjugates. However, these conjugates still may be a source of DCP in hydrolysis reactions caused by microorganisms in the environment or in the digestive tract of animals and humans. Removal of xenobiotics by glycoside conjugation thus may result in underestimation of the risk associated with toxic compounds like DCP in the environment or in the food chain.
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Affiliation(s)
- Francois Laurent
- Institut National de la Recherche Agronomique, Unite Mixte de Recherches 1089 Xénobiotiques, F-31000 Toulouse, France.
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Laurent F, Debrauwer L, Pascal-Lorber S. Metabolism of [14C]-2,4-dichlorophenol in edible plants. PEST MANAGEMENT SCIENCE 2006; 62:558-64. [PMID: 16628540 DOI: 10.1002/ps.1213] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Several 2,4-dichlorophenoxyacetic acid (2,4-D)-sensitive plants have been modified by genetic engineering with tfdA gene to acquire 2,4-D tolerance. The expression product of this gene degrades 2,4-D to 2,4-dichlorophenol (DCP), which is less phytotoxic but could cause a problem of food safety. After a comparison of 2,4-D and DCP metabolism in transgenic 2,4-D-tolerant and wild cotton (Gossypium hirsutum L.), a direct study of DCP metabolism in edible plants was performed. After petiolar uptake of a [U-phenyl-(14)C]-DCP solution followed by a 48 h water chase, aqueous extracts were analysed by high-performance liquid chromatography. Metabolites were thereafter isolated and their structural identities were determined by enzymatic and chemical hydrolyses and mass spectrometry analyses. The metabolic fate of DCP was equivalent to 2,4-D metabolism in transgenic 2,4-D-tolerant cotton. In addition, DCP metabolism was similar in transgenic and wild cotton. The major terminal metabolites were DCP-saccharide conjugates in all species, essentially DCP-(6-O-malonyl)-glucoside or its precursor DCP-glucose. The significance of this metabolic pathway with regard to food safety is discussed.
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Affiliation(s)
- François Laurent
- INRA, UMR Xénobiotiques, 180 Ch. de Tournefeuille, BP3, F-31931 Toulouse Cedex 9, France.
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A kinetic method for para-nitrophenol determination based on its inhibitory effect on the catalatic reaction of catalase. OPEN CHEM 2005. [DOI: 10.2478/bf02475190] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
AbstractThe inhibitory effect of para-nitrophenol on the catalytic reaction of catalase was investigated. Michaelis-Menten kinetic parameters were determined from Lineweaver-Burk plots obtained in the absence or in the presence of the inhibitor. The inhibitor pattern, revealed by the Lineweaver-Burk plots, suggested a fully mixed inhibition mechanism. Spectrophotometric monitoring of the indicator reaction: $$H_2 O_2 \xrightarrow{{catalase,para - nitrophenol}}H_2 O + \tfrac{1}{2}O_2 $$ in conjunction with initial rate measurements was employed for the kinetic determination of the inhibitor. Calibration plots of initial rate vs. para-nitrophenol concentration were linear in the concentration range 0.9·10−5–2.5·10−5 mol/L and the detection limit was 3·10−6 mol/L (417 μg/L) para-nitrophenol. Interferences from other phenolic compounds like orto-cresole, meta-and orto-nitrophenol were observed.
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Mahmood S, Paton GI, Prosser JI. Cultivation-independent in situ molecular analysis of bacteria involved in degradation of pentachlorophenol in soil. Environ Microbiol 2005; 7:1349-60. [PMID: 16104858 DOI: 10.1111/j.1462-2920.2005.00822.x] [Citation(s) in RCA: 94] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The central aim of this study was to determine which components of an indigenous bacterial community in pristine grassland soil were capable of degrading pentachlorophenol (PCP) using two cultivation-independent, in situ, molecular techniques. The first involved polymerase chain reaction (PCR) and reverse transcription polymerase chain reaction (RT-PCR) amplification of 16S rRNA genes from DNA and RNA, respectively, extracted from PCP-amended soil. The second involved stable isotope probing (SIP), with incubation of soil with 13C-PCP and molecular analysis of 13C-labelled RNA, derived from cells incorporating PCP or its breakdown products, after separation from 12C-RNA by ultracentrifugation. Bacterial communities were characterized by denaturing gradient gel electrophoresis (DGGE) analysis of amplification products. PCP was degraded at an approximate rate of 1.18+/-0.25 (SEM) mg kg-1 day-1 and 39% of the measurable PCP fraction was degraded after incubation for 63 days. PCP degradation was associated with significant changes in bacterial community structure, leading to the appearance of seven bands in both DNA- and RNA-based DGGE profiles, the latter providing clearer evidence of qualitative shifts in community structure. The majority of novel bands increased in relative intensity during the first 35 days and subsequently decreased in relative intensity as incubation continued. Sequence and phylogenetic analysis of six of these bands indicated most to have closest database relatives that were uncultured bacteria with sequence homologies to reported hydrocarbon degraders. No band could be detected in RNA-SIP-DGGE profiles derived from 13C-RNA fractions at day 0 but several faint bands appeared in these fractions after incubation of soil for 4 days, indicating assimilation of PCP or its degradation products. These bands increased in intensity during subsequent incubation for 21 days and decreased with further incubation. With one exception, RNA-SIP-DGGE and RNA-DGGE profiles were similar, indicating that RNA-targeted DGGE, in this case, provided a good indication of the metabolically active microbial community.
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Affiliation(s)
- Shahid Mahmood
- School of Medical Sciences, Institute of Medical Sciences, University of Aberdeen, Aberdeen, UK
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Effects of contaminants on biological model membranes: The advantage of the ASAXS method for the study of the location of copper ions and dihalogenated phenol molecules. Colloids Surf A Physicochem Eng Asp 2005. [DOI: 10.1016/j.colsurfa.2005.02.041] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Liu Y, Chen JN, Zhao JS, Yu HX, Wang XD, Jiang J, Jin HJ, Zhang JF, Wang LS. Three-dimensional quantitative structure activity relationship (3D-QSAR) analysis for in vitro toxicity of chlorophenols to HepG2 cells. CHEMOSPHERE 2005; 60:791-5. [PMID: 15946721 DOI: 10.1016/j.chemosphere.2005.04.019] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
In the present paper, comparative molecular field analysis (CoMFA) and comparative molecular similarity indices analysis (CoMSIA) were applied to investigate two 3D-QSAR models for the cytotoxicity of chlorophenols. These models have evaluated the intensity of chlorophenols' toxicity on HepG2 cells in vitro. The CoMFA model has both high consistency and predictability. The contribution of the electrostatic field to biological activity is greater than that of the steric field. The CoMSIA model used in this study includes two fields, one is hydrophobic field, and the other is electrostatic field. The relative contribution of them is 0.789:0.211. Consisted with the CoMFA model, the CoMSIA electrostatic filed also plays a dominant role. The CoMFA and CoMSIA contour maps significantly elucidated that the electrostatic field is more important than the other fields and might be one of the reasons resulting in potential reactive mechanism involved in cell proliferation inhibition.
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Affiliation(s)
- Y Liu
- The State Key Laboratory of Pollution Control and Resources Reuse, School of the Environment, Nanjing University, Nanjing 210093, China
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Lanthier M, Juteau P, Lépine F, Beaudet R, Villemur R. Desulfitobacterium hafniense is present in a high proportion within the biofilms of a high-performance pentachlorophenol-degrading, methanogenic fixed-film reactor. Appl Environ Microbiol 2005; 71:1058-65. [PMID: 15691966 PMCID: PMC546785 DOI: 10.1128/aem.71.2.1058-1065.2005] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
We developed a pentachlorophenol (PCP)-degrading, methanogenic fixed-film reactor by using broken granular sludge from an upflow anaerobic sludge blanket reactor. This methanogenic consortium was acclimated with increasing concentrations of PCP. After 225 days of acclimation, the reactor was performing at a high level, with a PCP removal rate of 1,173 muM day(-1), a PCP removal efficiency of up to 99%, a degradation efficiency of approximately 60%, and 3-chlorophenol as the main chlorophenol residual intermediate. Analyses by PCR-denaturing gradient gel electrophoresis (DGGE) showed that Bacteria and Archaea in the reactor stabilized in the biofilms after 56 days of operation. Important modifications in the profiles of Bacteria between the original granular sludge and the reactor occurred, as less than one-third of the sludge DGGE bands were still present in the reactor. Fluorescence in situ hybridization experiments with probes for Archaea or Bacteria revealed that the biofilms were composed mostly of Bacteria, which accounted for 70% of the cells. With PCR species-specific primers, the presence of the halorespiring bacterium Desulfitobacterium hafniense in the biofilm was detected very early during the reactor acclimation period. D. hafniense cells were scattered in the biofilm and accounted for 19% of the community. These results suggest that the presence of PCP-dehalogenating D. hafniense in the biofilm was crucial for the performance of the reactor.
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Affiliation(s)
- M Lanthier
- INRS-Institut Armand-Frappier, 531 Boul. des Prairies, Laval, Québec, Canada H7V 1B7
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Kojima M, Tsunoi S, Tanaka M. High performance solid-phase analytical derivatization of phenols for gas chromatography-mass spectrometry. J Chromatogr A 2004; 1042:1-7. [PMID: 15296382 DOI: 10.1016/j.chroma.2004.05.012] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The solid-phase analytical derivatization of phenols with pentafluoropyridine is performed. Fourteen phenols including chlorophenols and alkylphenols, could be efficiently adsorbed on a strong anion-exchange solid phase, Oasis MAX. The phenols adsorbed on Oasis MAX as phenolate ions were desorbed after derivatization with pentafluoropyridine. After optimization of the adsorption and derivatization, we established a procedure for the determination of the phenols in water samples by means of GC-MS. Under the optimized conditions, calibration curves were linear in the range of 10-1000 ng/l for the alkylphenols (100-10000 ng/l for nonylphenol) and 50-1000 ng/l for the others. By processing 100 ml samples, the method detection limits (MDLs) were in the range of 0.45-2.3 ng/l for the alkylphenols (8.5 ng/l for nonylphenol) and 2.4-16 ng/l for the others. Compared with the biphasic reaction system, the signal-to-noise ratios obtained by the solid-phase analytical derivatization were significantly higher. This is ascribed to the fact that coexisting neutral and acidic compounds are efficiently removed from the sample solution by this solid-phase analytical derivatization system.
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Affiliation(s)
- Miki Kojima
- Research Center for Environmental Preservation, Osaka University, Yamada-oka 2-4, Suita, Osaka 565-0871, Japan
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21
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Pascal-Lorber S, Rathahao E, Cravedi JP, Laurent F. Metabolic fate of [14C]-2,4-dichlorophenol in macrophytes. CHEMOSPHERE 2004; 56:275-284. [PMID: 15172600 DOI: 10.1016/j.chemosphere.2004.02.017] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2003] [Revised: 12/31/2003] [Accepted: 02/09/2004] [Indexed: 05/24/2023]
Abstract
The metabolic fate of 2,4-dichlorophenol (DCP) was investigated in six macrophytes representing different life forms. Salvinia natans and Lemna minor were chosen as surface-floating plants, Glyceria maxima and Mentha aquatica as emergent species and Myriophyllum spicatum and Hippuris vulgaris as submerged aquatic plants. After uptake of a [U-phenyl-14C]-DCP solution followed by a 48 h water chase, whole plants (L. minor, S. natans) or excised shoots were harvested and aqueous extracts were analysed by high performance liquid chromatography (HPLC). Metabolites were then isolated, submitted to enzymatic or chemical hydrolyses and characterised by electrospray ionisation-mass spectrometric analyses. Whereas DCP monoglucosides or more complex monoglucoside esters, either malonyl or acetyl, were found in most species, an unusual glucosyl-pentose conjugate was identified as the DCP major metabolite in L. minor and G. maxima. Our results showed for the first time the ability of five macrophytes to uptake and metabolise DCP and the characterisation of their metabolic pathways of DCP biotransformation.
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Affiliation(s)
- S Pascal-Lorber
- INRA, UMR Xénobiotiques, 180 ch. de Tournefeuille, BP3, 31931 Toulouse Cedex 9, France.
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22
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Csiszár A, Klumpp E, Bóta A, Szegedi K. Effect of 2,4-dichlorophenol on DPPC/water liposomes studied by X-ray and freeze-fracture electron microscopy. Chem Phys Lipids 2003; 126:155-66. [PMID: 14623451 DOI: 10.1016/j.chemphyslip.2003.08.005] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
The effect of 2,4-dichlorophenol (DCP) was studied on the fully hydrated 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC)--water liposomes. The structure and the thermotropic phase behaviour of the liposomes was examined in the presence of DCP (DCP/DPPC molar ratio, varied from 2x10(-2) up to 1) using small- and wide-angle X-ray scattering (SAXS, WAXS) and freeze-fracture electron microscopy. The structural behaviour of the DPPC/DCP/water system was strongly dependent on the concentration of the DCP. In the pretransition range the DCP molecules (at 2x10(-2) DCP/DPPC molar ratio) induced the interdigitated phase beside the parent (gel and rippled gel) phases, locally which can be form at higher DCP concentration. When the DCP/DPPC molar ratio was increased the pretransition disappeared and the main transition was shifted to lower temperatures. In the molar ratio range from 2x10(-1) up to 5x10(-1), a coexistence of different phases was observed in the wide temperature range from 20 up to 40 degrees C. With a further increase of the DCP/DPPC molar ratio (6x10(-1) to 1) only the interdigitated gel phase occurred below 25 degrees C. A schematic phase diagram of DPPC/DCP/water system was constructed to summarise the results.
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Affiliation(s)
- Agnes Csiszár
- Institute of Agrosphere, Research Centre Julich, D-52428 Julich, Germany
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23
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Mardones C, Palma J, Sepúlveda C, Berg A, von Baer D. Determination of tribromophenol and pentachlorophenol and its metabolite pentachloroanisole inAsparagus officinalis by gas chromatography/mass spectrometry. J Sep Sci 2003. [DOI: 10.1002/jssc.200301303] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Dec J, Haider K, Bollag JM. Release of substituents from phenolic compounds during oxidative coupling reactions. CHEMOSPHERE 2003; 52:549-556. [PMID: 12738292 DOI: 10.1016/s0045-6535(03)00236-4] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Phenolic compounds originating from plant residue decomposition or microbial metabolism form humic-like polymers during oxidative coupling reactions mediated by various phenoloxidases or metal oxides. Xenobiotic phenols participating in these reactions undergo either polymerization or binding to soil organic matter. Another effect of oxidative coupling is dehalogenation, decarboxylation or demethoxylation of the substrates. To investigate these phenomena, several naturally occurring and xenobiotic phenols were incubated with various phenoloxidases (peroxidase, laccase, tyrosinase) or with birnessite (delta-MnO(2)), and monitored for chloride release, CO(2) evolution, and methanol or methane production. The release of chloride ions during polymerization and binding ranged between 0.2% and 41.4%. Using the test compounds labeled with 14C in three different locations (carboxyl group, aromatic ring, or aliphatic chain), it was demonstrated that 14CO(2) evolution was mainly associated with the release of carboxyl groups (17.8-54.8% of the initial radioactivity). Little mineralization of 14C-labeled aromatic rings or aliphatic carbons occurred in catechol, ferulic or p-coumaric acids (0.1-0.7%). Demethoxylation ranged from 0.5% to 13.9% for 2,6-dimethoxyphenol and syringic acid, respectively. Methylphenols showed no demethylation. In conclusion, dehalogenation, decarboxylation and demethoxylation of phenolic substrates appear to be controlled by a common mechanism, in which various substituents are released if they are attached to carbon atoms involved in coupling. Electron-withdrawing substituents, such as -COOH and -Cl, are more susceptible to release than electron-donating ones, such as -OCH(3) and -CH(3). The release of organic substituents during polymerization and binding of phenols may add to CO(2) production in soil.
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Affiliation(s)
- Jerzy Dec
- Laboratory of Soil Biochemistry, Penn State Institutes of the Environment, The Pennsylvania State University, 129 Land and Water Research Bldg, University Park, PA 16802, USA.
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Malleret L, Dugay J, Bruchet A, Hennion MC. Simultaneous determination of "earthy-musty" odorous haloanisoles and their corresponding halophenols in water samples using solid-phase microextraction coupled to gas chromatography with electron-capture detection. J Chromatogr A 2003; 999:135-44. [PMID: 12885058 DOI: 10.1016/s0021-9673(03)00526-0] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
Certain haloanisoles present at trace levels cause a large part of earthy-musty off-flavor problems in drinking water. These potent odorous chemicals come mainly through biomethylation of their corresponding halopenols. To enable the investigation of both families of compounds, a method involving solid-phase microextraction (SPME) was developed and the main parameters governing SPME were optimized. This method allows the simultaneous quantification of haloanisoles and halophenols at levels ranging from 1 to 100 or 250 ng/l, with detection limits of about 0.5 ng/l and could be applied to potable as well as raw surface waters.
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Affiliation(s)
- Laure Malleret
- Laboratoire Environnement et Chimie Analytique, UMR 7121, Ecole Supérieure de Physique et Chimie Industrielles de la Ville de Paris, 10 Rue Vauquelin, 75005 Paris, France
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26
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Improved determination of chlorophenols in water by solid-phase microextraction followed by benzoylation and gas chromatography with electron capture detection. Chromatographia 2002. [DOI: 10.1007/bf02492907] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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27
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Sarrión MN, Santos FJ, Galceran MT. Determination of chlorophenols by solid-phase microextraction and liquid chromatography with electrochemical detection. J Chromatogr A 2002; 947:155-65. [PMID: 11883650 DOI: 10.1016/s0021-9673(01)01609-0] [Citation(s) in RCA: 99] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
A solid-phase microextraction method has been developed for the determination of 19 chlorophenols (CPs) in environmental samples. The analytical procedure involves direct sampling of CPs from water using solid-phase microextraction (SPME) and determination by liquid chromatography with electrochemical detection (LC-ED). Three kinds of fibre [50 microm carbowax-templated resin (CW-TPR), 60 microm polydimethylsiloxane-divinylbenzene (PDMS-DVB) and 85 microm polyacrylate (PA)] were evaluated for the analysis of CPs. Of these fibres, CW-TPR is the most suitable for the determination of CPs in water. Optimal conditions for both desorption and absorption SPME processes, such as composition of the desorption solvent (water-acetonitrile-methanol, 20:30:50) and desorption time (5 min), extraction time (50 min) and temperature (40 degrees C) as well as pH (3.5) and ionic strength (6 g NaCl) were established. The precision of the SPME-LC-ED method gave relative standard deviations (RSDs) of between 4 and 11%. The method was linear over three to four orders of magnitude and the detection limits, from 3 to 8 ng l(-1), were lower than the European Community legislation limits for drinking water. The method was applied to the analysis of CPs in drinking water and wood samples.
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Affiliation(s)
- M N Sarrión
- Departament de Química Analítica, Facultat de Química, Universitat de Barcelona, Spain
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Ohlenbusch G, Frimmel FH. Investigations on the sorption of phenols to dissolved organic matter by a QSAR study. CHEMOSPHERE 2001; 45:323-327. [PMID: 11592422 DOI: 10.1016/s0045-6535(00)00588-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
The sorption of various phenols to Aldrich-HA and BSA was investigated by solid phase microextraction (SPME). The Aldrich-HA sorption with log K(DOC)-values between 2 and 3 was determined, whereas the sorption to BSA with log K(DOC)-values between 2 and 6 was much stronger. To enable an estimation of sorption constants a QSAR model was investigated. The linear free energy relationship (LFER) model showed a good correlation between the sorption constants and the log K(OW)-values with correlation coefficients of R = 0.910 and R = 0.878 for Aldrich-HA and BSA, respectively.
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Affiliation(s)
- G Ohlenbusch
- Engler-Bunte-Institut, Bereich Wasserchemie, Universität Karlsruhe, Germany.
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29
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Boyd EM, Killham K, Meharg AA. Toxicity of mono-, di- and tri-chlorophenols to lux marked terrestrial bacteria, Burkholderia species Rasc c2 and Pseudomonas fluorescens. CHEMOSPHERE 2001; 43:157-166. [PMID: 11297395 DOI: 10.1016/s0045-6535(00)00266-6] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Burkholderia species RASC and Pseudomonas fluorescens were marked with lux genes, encoding for bioluminescence and used to assess the toxicity of mono-, di- and tri-chlorophenols by determining the decline in bioluminescence following exposure to the compounds in aqueous solution. Toxicity was expressed as a 50% effective concentration value (EC50, equating to the concentration of compound which caused a 50% decline in bioluminescence. Comparing the toxicity values of the compounds showed that, in general, increasing the degree of chlorination, increased toxicity. By carrying out forward multiple linear regressions with log10 EC50 values and physio-chemical descriptors, it was shown that molecular parameters describing the hydrogen bonding nature of a chlorophenol provided a better fit than regressions between toxicity data and log10 Kow alone. Utilising these descriptor variables in equations, it was shown that the toxicity of chlorophenols to the lux marked bacteria could be predicted from the compounds physio-chemical characteristics. By correlating lux marked RASC c2 and P. fluorescens EC50 values with toxicity values using Pimephales promelas (fathead minnow), Tetrahymena pyriformis (ciliate) and marine bacterium Vibriofischeri, it was apparent that lux marked RASC c2 correlated well with the freshwater aquatic species (P. promelas and T. pyriformis). This implied that for predictions of toxicity of organic xenobiotic compounds to higher organisms, lux marked RASC c2 could be utilised as a rapid surrogate.
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Affiliation(s)
- E M Boyd
- Centre for Ecology and Hydrology, Huntingdon, Cambridgeshire, UK.
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30
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Chapter 6 Phenols. ACTA ACUST UNITED AC 2001. [DOI: 10.1016/s1567-7192(01)80009-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/21/2023]
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31
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Shaw LJ, Beaton Y, Glover LA, Killham K, Meharg AA. Development and characterization of a lux-modified 2,4-dichlorophenol-degrading Burkholderia sp. RASC. Environ Microbiol 1999; 1:393-9. [PMID: 11207758 DOI: 10.1046/j.1462-2920.1999.00049.x] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
lux-marked biosensors for assessing the toxicity and bioremediation potential of polluted environments may complement traditional chemical techniques. luxCDABE genes were introduced into the chromosome of the 2,4-dichlorophenol (2,4-DCP)-mineralizing bacterium, Burkholderia sp. RASC c2, by biparental mating using the Tn4431 system. Experiments revealed that light output was constitutive and related to cell biomass concentration during exponential growth. The transposon insertion was stable and did not interrupt 2,4-DCP-degradative genes, and expression of luxCDABE did not constitute a metabolic burden to the cell. A bioluminescence response was detectable at sublethal 2,4-DCP concentrations: at < 10.26 microg ml(-1), bioluminescence was stimulated (e.g. 218% of control), but at concentrations >60 microg ml(-1) it declined to < 1%. Investigating the effect of [14C]-2,4-DCP concentration on the evolution of 14CO2 revealed that, for initial concentrations of 2.5-25 microg ml(-1), approximately equals 55% of the added 14C was mineralized after 24 h compared with <1% at 50 and 100 microg ml(-1). Inhibition of 2,4-DCP mineralization between 25 and 50 microg ml(-1) corresponded well to the EC50 value (33.83 microg ml(-1)) obtained from bioluminescence inhibition studies. lux-marked RASC c2 may therefore be used as a functionally (i.e. 2,4-DCP degrader) and environmentally relevant biosensor of toxicity and biodegradation inhibition.
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Affiliation(s)
- L J Shaw
- Institute of Terrestrial Ecology, Huntingdon, Cambridgeshire, UK.
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