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Kumar A, Fitoussi N, Sanadhya P, Sichov N, Bucki P, Bornstein M, Belausuv E, Brown Miyara S. Two Candidate Meloidogyne javanica Effector Genes, MjShKT and MjPUT3: A Functional Investigation of Their Roles in Regulating Nematode Parasitism. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2023; 36:79-94. [PMID: 36324054 DOI: 10.1094/mpmi-10-22-0212-r] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
During parasitism, root-knot nematode Meloidogyne spp. inject molecules termed effectors that have multifunctional roles in construction and maintenance of nematode feeding sites. As an outcome of transcriptomic analysis of Meloidogyne javanica, we identified and characterized two differentially expressed genes encoding the predicted proteins MjShKT, carrying a Stichodactyla toxin (ShKT) domain, and MjPUT3, carrying a ground-like domain, both expressed during nematode parasitism of the tomato plant. Fluorescence in-situ hybridization revealed expression of MjShKT and MjPUT3 in the dorsal esophageal glands, suggesting their injection into host cells. MjShKT expression was upregulated during the parasitic life stages, to a maximum at the mature female stage, whereas MjPUT3 expression increased in third- to fourth-stage juveniles. Subcellular in-planta localization of MjShKT and MjPUT3 using a fused fluorescence marker indicated MjShKT co-occurrence with the endoplasmic reticulum, the perinuclear endoplasmatic reticulum, and the Golgi organelle markers, while MjPUT3 localized, to some extent, within the endoplasmatic reticulum and was clearly observed within the nucleoplasm. MjShKT inhibited programmed cell death induced by overexpression of MAPKKKα and Gpa2/RBP-1. Overexpression of MjShKT in tomato hairy roots allowed an increase in nematode reproduction, as indicated by the high number of eggs produced on roots overexpressing MjShKT. Roots overexpressing MjPUT3 were characterized by enhanced root growth, with no effect on nematode development on those roots. Investigation of the two candidate effectors suggested that MjShKT is mainly involved in manipulating the plant effector-triggered immune response toward establishment and maintenance of active feeding sites, whereas MjPUT3 might modulate roots morphology in favor of nematode fitness in the host roots. [Formula: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
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Affiliation(s)
- Anil Kumar
- Department of Entomology, Nematology and Chemistry units, Agricultural Research Organization (ARO), Volcani Center, Bet Dagan 50250, Israel
| | - Nathalia Fitoussi
- Department of Entomology, Nematology and Chemistry units, Agricultural Research Organization (ARO), Volcani Center, Bet Dagan 50250, Israel
- Department of Plant Pathology and Microbiology, the Robert H. Smith Faculty of Agriculture, Food and Environment, the Hebrew University of Jerusalem, Rehovot 76100, Israel
| | - Payal Sanadhya
- Department of Entomology, Nematology and Chemistry units, Agricultural Research Organization (ARO), Volcani Center, Bet Dagan 50250, Israel
| | - Natalia Sichov
- Department of Entomology, Nematology and Chemistry units, Agricultural Research Organization (ARO), Volcani Center, Bet Dagan 50250, Israel
| | - Patricia Bucki
- Department of Entomology, Nematology and Chemistry units, Agricultural Research Organization (ARO), Volcani Center, Bet Dagan 50250, Israel
| | - Menachem Bornstein
- Department of Plant Pathology and Weed Research, ARO, Volcani Center, Bet Dagan 50250, Israel
| | - Eduard Belausuv
- Department of Plant Sciences, ARO, Volcani Center, Bet Dagan 50250, Israel
| | - Sigal Brown Miyara
- Department of Entomology, Nematology and Chemistry units, Agricultural Research Organization (ARO), Volcani Center, Bet Dagan 50250, Israel
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Fitoussi N, de Almeida Engler J, Sichov N, Bucki P, Sela N, Harel A, Belausuv E, Kumar A, Brown Miyara S. The Minichromosome Maintenance Complex Component 2 (MjMCM2) of Meloidogyne javanica is a potential effector regulating the cell cycle in nematode-induced galls. Sci Rep 2022; 12:9196. [PMID: 35654810 PMCID: PMC9163083 DOI: 10.1038/s41598-022-13020-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Accepted: 05/12/2022] [Indexed: 11/09/2022] Open
Abstract
Root-knot nematodes Meloidogyne spp. induce enlarged multinucleate feeding cells—galls—in host plant roots. Although core cell-cycle components in galls follow a conserved track, they can also be usurped and manipulated by nematodes. We identified a candidate effector in Meloidogyne javanica that is directly involved in cell-cycle manipulation—Minichromosome Maintenance Complex Component 2 (MCM2), part of MCM complex licensing factor involved in DNA replication. MjMCM2, which is induced by plant oxilipin 9-HOT, was expressed in nematode esophageal glands, upregulated during parasitic stages, and was localized to plant cell nucleus and plasma membrane. Infected tomato hairy roots overexpressing MjMCM2 showed significantly more galls and egg-mass-producing females than wild-type roots, and feeding cells showed more nuclei. Phylogenetic analysis suggested seven homologues of MjMCM2 with unknown association to parasitism. Sequence mining revealed two RxLR-like motifs followed by SEED domains in all Meloidogyne spp. MCM2 protein sequences. The unique second RxLR-like motif was absent in other Tylenchida species. Molecular homology modeling of MjMCM2 suggested that second RxLR2-like domain is positioned on a surface loop structure, supporting its function in polar interactions. Our findings reveal a first candidate cell-cycle gene effector in M. javanica—MjMCM2—that is likely secreted into plant host to mimic function of endogenous MCM2.
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Affiliation(s)
- Nathalia Fitoussi
- Department of Entomology, Nematology and Chemistry Units, Agricultural Research Organization (ARO), The Volcani Center, 50250, Bet Dagan, Israel.,Department of Plant Pathology and Microbiology, The Faculty of Agriculture Food and Environment, The Hebrew University of Jerusalem, 76100, Rehovot, Israel
| | | | - Natalia Sichov
- Department of Entomology, Nematology and Chemistry Units, Agricultural Research Organization (ARO), The Volcani Center, 50250, Bet Dagan, Israel
| | - Patricia Bucki
- Department of Entomology, Nematology and Chemistry Units, Agricultural Research Organization (ARO), The Volcani Center, 50250, Bet Dagan, Israel
| | - Noa Sela
- Bioinformatics Unit, Institute of Plant Sciences, Agricultural Research Organization (ARO), The Volcani Center, 50250, Bet Dagan, Israel
| | - Arye Harel
- Bioinformatics Unit, Institute of Plant Sciences, Agricultural Research Organization (ARO), The Volcani Center, 50250, Bet Dagan, Israel
| | - Eduard Belausuv
- Department of Plant Sciences, Agricultural Research Organization (ARO), The Volcani Center, Bet Dagan, Israel
| | - Anil Kumar
- Department of Entomology, Nematology and Chemistry Units, Agricultural Research Organization (ARO), The Volcani Center, 50250, Bet Dagan, Israel
| | - Sigal Brown Miyara
- Department of Entomology, Nematology and Chemistry Units, Agricultural Research Organization (ARO), The Volcani Center, 50250, Bet Dagan, Israel.
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Masonbrink RE, Maier TR, Hudson M, Severin A, Baum T. A chromosomal assembly of the soybean cyst nematode genome. Mol Ecol Resour 2021; 21:2407-2422. [PMID: 34036752 DOI: 10.1111/1755-0998.13432] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Revised: 04/16/2021] [Accepted: 05/13/2021] [Indexed: 01/02/2023]
Abstract
The soybean cyst nematode (Heterodera glycines) is a sedentary plant parasite that exceeds billion USD annually in yield losses. This problem is exacerbated by H. glycines populations overcoming the limited sources of natural resistance in soybean and by the lack of effective and safe alternative treatments. Although there are genetic determinants that render soybeans resistant to nematode genotypes, resistant soybeans are increasingly ineffective because their multiyear usage has selected for virulent H. glycines populations. Successful H. glycines infection relies on the comprehensive re-engineering of soybean root cells into a syncytium, as well as the long-term suppression of host defences to ensure syncytial viability. At the forefront of these complex molecular interactions are effectors, the proteins secreted by H. glycines into host root tissues. The mechanisms that control genomic effector acquisition, diversification, and selection are important insights needed for the development of essential novel control strategies. As a foundation to obtain this understanding, we created a nine-scaffold, 158 Mb pseudomolecule assembly of the H. glycines genome using PacBio, Chicago, and Hi-C sequencing. A Mikado consensus gene prediction produced an annotation of 22,465 genes using short- and long-read expression data. To evaluate assembly and annotation quality, we cross-examined synteny among H. glycines assemblies, and compared BUSCO across related species. To describe the predicted proteins involved in H. glycines' secretory pathway, we contrasted expression between preparasitic and parasitic stages with functional gene information. Here, we present the results from our assembly and annotation of the H. glycines genome and contribute this resource to the scientific community.
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Affiliation(s)
- Rick E Masonbrink
- Genome Informatics Facility, Office of Biotechnology, Iowa State University, Ames, IA, USA
| | - Tom R Maier
- Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, USA
| | - Matthew Hudson
- Department of Crop Sciences, University of Illinois, Urbana, IL, USA
| | - Andrew Severin
- Genome Informatics Facility, Office of Biotechnology, Iowa State University, Ames, IA, USA
| | - Thomas Baum
- Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, USA
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Coke MC, Mantelin S, Thorpe P, Lilley CJ, Wright KM, Shaw DS, Chande A, Jones JT, Urwin PE. The GpIA7 effector from the potato cyst nematode Globodera pallida targets potato EBP1 and interferes with the plant cell cycle programme. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:erab353. [PMID: 34310681 PMCID: PMC8547150 DOI: 10.1093/jxb/erab353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Accepted: 07/26/2021] [Indexed: 06/13/2023]
Abstract
The potato cyst nematode Globodera pallida acquires all of its nutrients from an elaborate feeding site that it establishes in a host plant root. Normal development of the root cells is re-programmed in a process coordinated by secreted nematode effector proteins. The biological function of the G. pallida GpIA7 effector was investigated in this study. GpIA7 is specifically expressed in the subventral pharyngeal glands of pre-parasitic stage nematodes. Ectopic expression of GpIA7 in potato plants affected plant growth and development, suggesting a potential role for this effector in feeding site establishment. Potato plants overexpressing GpIA7 were shorter, with reduced tuber weight and delayed flowering. We provide evidence that GpIA7 associates with the plant growth regulator StEBP1 (ErbB-3 epidermal growth factor receptor-binding protein 1). GpIA7 modulates the regulatory function of StEBP1, altering the expression level of downstream target genes, including ribonucleotide reductase 2, cyclin D3;1 and retinoblastoma related 1, which are downregulated in plants overexpressing GpIA7. We provide an insight into the molecular mechanism used by the nematode to manipulate the host cell cycle and provide evidence that this may rely, at least in part, on hindering the function of host EBP1.
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Affiliation(s)
- Mirela C Coke
- Centre for Plant Sciences, University of Leeds, Leeds LS2 9JT, UK
| | - Sophie Mantelin
- The James Hutton Institute, Dundee Effector Consortium, Invergowrie, Dundee DD2 5DA, UK
| | - Peter Thorpe
- Centre for Plant Sciences, University of Leeds, Leeds LS2 9JT, UK
- The James Hutton Institute, Dundee Effector Consortium, Invergowrie, Dundee DD2 5DA, UK
| | | | - Kathryn M Wright
- The James Hutton Institute, Dundee Effector Consortium, Invergowrie, Dundee DD2 5DA, UK
| | - Daniel S Shaw
- Centre for Plant Sciences, University of Leeds, Leeds LS2 9JT, UK
| | - Adams Chande
- Centre for Plant Sciences, University of Leeds, Leeds LS2 9JT, UK
| | - John T Jones
- The James Hutton Institute, Dundee Effector Consortium, Invergowrie, Dundee DD2 5DA, UK
- School of Biology, University of St Andrews, North Haugh, St Andrews KY16 9TZ, UK
| | - Peter E Urwin
- Centre for Plant Sciences, University of Leeds, Leeds LS2 9JT, UK
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Huo SM, Yan ZC, Zhang F, Chen L, Sun JT, Hoffmann AA, Hong XY. Comparative genome and transcriptome analyses reveal innate differences in response to host plants by two color forms of the two-spotted spider mite Tetranychus urticae. BMC Genomics 2021; 22:569. [PMID: 34301178 PMCID: PMC8306301 DOI: 10.1186/s12864-021-07894-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Accepted: 07/08/2021] [Indexed: 12/26/2022] Open
Abstract
Background The two-spotted spider mite, Tetranychus urticae, is a major agricultural pest with a cosmopolitan distribution, and its polyphagous habits provide a model for investigating herbivore-plant interactions. There are two body color forms of T. urticae with a different host preference. Comparative genomics and transcriptomics are used here to investigate differences in responses of the forms to host plants at the molecular level. Biological responses of the two forms sourced from multiple populations are also presented. Results We carried out principal component analysis of transcription changes in three red and three green T. urticae populations feeding on their original host (common bean), and three hosts to which they were transferred: cotton, cucumber and eggplant. There were differences among the forms in gene expression regardless of their host plant. In addition, different changes in gene expression were evident in the two forms when responding to the same host transfer. We further compared biological performance among populations of the two forms after feeding on each of the four hosts. Fecundity of 2-day-old adult females showed a consistent difference between the forms after feeding on bean. We produced a 90.1-Mb genome of the red form of T. urticae with scaffold N50 of 12.78 Mb. Transcriptional profiles of genes associated with saliva, digestion and detoxification showed form-dependent responses to the same host and these genes also showed host-specific expression effects. Conclusions Our research revealed that forms of T. urticae differ in host-determined transcription responses and that there is form-dependent plasticity in the transcriptomic responses. These differences may facilitate the extreme polyphagy shown by spider mites, although fitness differences on hosts are also influenced by population differences unrelated to color form. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-021-07894-7.
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Affiliation(s)
- Shi-Mei Huo
- Department of Entomology, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, China
| | - Zhi-Chao Yan
- Department of Entomology, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, China
| | - Feng Zhang
- Department of Entomology, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, China
| | - Lei Chen
- Department of Entomology, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, China
| | - Jing-Tao Sun
- Department of Entomology, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, China
| | - Ary A Hoffmann
- School of BioSciences, Bio21 Institute, The University of Melbourne, Melbourne, Victoria, 3010, Australia
| | - Xiao-Yue Hong
- Department of Entomology, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, China.
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6
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Jonckheere W, Dermauw W, Zhurov V, Wybouw N, Van den Bulcke J, Villarroel CA, Greenhalgh R, Grbić M, Schuurink RC, Tirry L, Baggerman G, Clark RM, Kant MR, Vanholme B, Menschaert G, Van Leeuwen T. The Salivary Protein Repertoire of the Polyphagous Spider Mite Tetranychus urticae: A Quest for Effectors. Mol Cell Proteomics 2016; 15:3594-3613. [PMID: 27703040 PMCID: PMC5141274 DOI: 10.1074/mcp.m116.058081] [Citation(s) in RCA: 71] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2016] [Revised: 08/11/2016] [Indexed: 11/06/2022] Open
Abstract
The two-spotted spider mite Tetranychus urticae is an extremely polyphagous crop pest. Alongside an unparalleled detoxification potential for plant secondary metabolites, it has recently been shown that spider mites can attenuate or even suppress plant defenses. Salivary constituents, notably effectors, have been proposed to play an important role in manipulating plant defenses and might determine the outcome of plant-mite interactions. Here, the proteomic composition of saliva from T. urticae lines adapted to various host plants-bean, maize, soy, and tomato-was analyzed using a custom-developed feeding assay coupled with nano-LC tandem mass spectrometry. About 90 putative T. urticae salivary proteins were identified. Many are of unknown function, and in numerous cases belonging to multimembered gene families. RNAseq expression analysis revealed that many genes coding for these salivary proteins were highly expressed in the proterosoma, the mite body region that includes the salivary glands. A subset of genes encoding putative salivary proteins was selected for whole-mount in situ hybridization, and were found to be expressed in the anterior and dorsal podocephalic glands. Strikingly, host plant dependent expression was evident for putative salivary proteins, and was further studied in detail by micro-array based genome-wide expression profiling. This meta-analysis revealed for the first time the salivary protein repertoire of a phytophagous chelicerate. The availability of this salivary proteome will assist in unraveling the molecular interface between phytophagous mites and their host plants, and may ultimately facilitate the development of mite-resistant crops. Furthermore, the technique used in this study is a time- and resource-efficient method to examine the salivary protein composition of other small arthropods for which saliva or salivary glands cannot be isolated easily.
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Affiliation(s)
- Wim Jonckheere
- From the ‡Laboratory of Agrozoology, Department of Crop Protection, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, 9000 Gent, Belgium
- §Department of Evolutionary Biology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, the Netherlands
| | - Wannes Dermauw
- From the ‡Laboratory of Agrozoology, Department of Crop Protection, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, 9000 Gent, Belgium;
| | - Vladimir Zhurov
- ¶Department of Biology, The University of Western Ontario, London, ON, Canada N6A5B7
| | - Nicky Wybouw
- §Department of Evolutionary Biology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, the Netherlands
| | - Jan Van den Bulcke
- ‖UGCT - Woodlab-UGent, Department of Forest and Water Management, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, 9000 Gent, Belgium
| | - Carlos A Villarroel
- **Department of Plant Physiology, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, the Netherlands
- ‡‡Department of Population Biology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, the Netherlands
| | - Robert Greenhalgh
- §§Department of Biology, University of Utah, Salt Lake City 257 South 1400 East Utah 84112
| | - Mike Grbić
- ¶Department of Biology, The University of Western Ontario, London, ON, Canada N6A5B7
- ¶¶Instituto de Ciencias de la Vid y el Vino, 26006 Logrono, Spain
| | - Rob C Schuurink
- **Department of Plant Physiology, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, the Netherlands
| | - Luc Tirry
- From the ‡Laboratory of Agrozoology, Department of Crop Protection, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, 9000 Gent, Belgium
| | - Geert Baggerman
- ‖‖Center for Proteomics (CFP), University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp, Belgium
- Flemish Institute for Technological Research (VITO), Boeretang 200, 2400 Mol, Belgium
| | - Richard M Clark
- §§Department of Biology, University of Utah, Salt Lake City 257 South 1400 East Utah 84112
- Center for Cell and Genome Science, University of Utah, Salt Lake City 257 South 1400 East Utah 84122
| | - Merijn R Kant
- ‡‡Department of Population Biology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, the Netherlands
| | - Bartel Vanholme
- Department of Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
| | - Gerben Menschaert
- Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Coupure links 653, 9000 Gent, Belgium
| | - Thomas Van Leeuwen
- From the ‡Laboratory of Agrozoology, Department of Crop Protection, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, 9000 Gent, Belgium;
- §Department of Evolutionary Biology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, the Netherlands
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Pogorelko G, Juvale PS, Rutter WB, Hewezi T, Hussey R, Davis EL, Mitchum MG, Baum TJ. A cyst nematode effector binds to diverse plant proteins, increases nematode susceptibility and affects root morphology. MOLECULAR PLANT PATHOLOGY 2016; 17:832-44. [PMID: 26575318 PMCID: PMC6638508 DOI: 10.1111/mpp.12330] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2015] [Revised: 10/08/2015] [Accepted: 10/09/2015] [Indexed: 05/20/2023]
Abstract
Cyst nematodes are plant-parasitic roundworms that are of significance in many cropping systems around the world. Cyst nematode infection is facilitated by effector proteins secreted from the nematode into the plant host. The cDNAs of the 25A01-like effector family are novel sequences that were isolated from the oesophageal gland cells of the soybean cyst nematode (Heterodera glycines). To aid functional characterization, we identified an orthologous member of this protein family (Hs25A01) from the closely related sugar beet cyst nematode H. schachtii, which infects Arabidopsis. Constitutive expression of the Hs25A01 CDS in Arabidopsis plants caused a small increase in root length, accompanied by up to a 22% increase in susceptibility to H. schachtii. A plant-expressed RNA interference (RNAi) construct targeting Hs25A01 transcripts in invading nematodes significantly reduced host susceptibility to H. schachtii. These data document that Hs25A01 has physiological functions in planta and a role in cyst nematode parasitism. In vivo and in vitro binding assays confirmed the specific interactions of Hs25A01 with an Arabidopsis F-box-containing protein, a chalcone synthase and the translation initiation factor eIF-2 β subunit (eIF-2bs), making these proteins probable candidates for involvement in the observed changes in plant growth and parasitism. A role of eIF-2bs in the mediation of Hs25A01 virulence function is further supported by the observation that two independent eIF-2bs Arabidopsis knock-out lines were significantly more susceptible to H. schachtii.
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Affiliation(s)
- Gennady Pogorelko
- Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, 50011, USA
| | - Parijat S Juvale
- Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, 50011, USA
| | - William B Rutter
- Department of Plant Pathology, Kansas State University, Manhattan, KS, 66505, USA
| | - Tarek Hewezi
- Department of Plant Sciences, University of Tennessee, Knoxville, TN, 37996, USA
| | - Richard Hussey
- Department of Plant Pathology, The University of Georgia, Athens, GA, 30602, USA
| | - Eric L Davis
- Department of Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA
| | - Melissa G Mitchum
- Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA
| | - Thomas J Baum
- Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, 50011, USA
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Rehman S, Gupta VK, Goyal AK. Identification and functional analysis of secreted effectors from phytoparasitic nematodes. BMC Microbiol 2016; 16:48. [PMID: 27001199 PMCID: PMC4802876 DOI: 10.1186/s12866-016-0632-8] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2015] [Accepted: 01/22/2016] [Indexed: 01/09/2023] Open
Abstract
BACKGROUND Plant parasitic nematodes develop an intimate and long-term feeding relationship with their host plants. They induce a multi-nucleate feeding site close to the vascular bundle in the roots of their host plant and remain sessile for the rest of their life. Nematode secretions, produced in the oesophageal glands and secreted through a hollow stylet into the host plant cytoplasm, are believed to play key role in pathogenesis. To combat these persistent pathogens, the identity and functional analysis of secreted effectors can serve as a key to devise durable control measures. In this review, we will recapitulate the knowledge over the identification and functional characterization of secreted nematode effector repertoire from phytoparasitic nematodes. RESEARCH Despite considerable efforts, the identity of genes encoding nematode secreted proteins has long been severely hampered because of their microscopic size, long generation time and obligate biotrophic nature. The methodologies such as bioinformatics, protein structure modeling, in situ hybridization microscopy, and protein-protein interaction have been used to identify and to attribute functions to the effectors. In addition, RNA interference (RNAi) has been instrumental to decipher the role of the genes encoding secreted effectors necessary for parasitism and genes attributed to normal development. Recent comparative and functional genomic approaches have accelerated the identification of effectors from phytoparasitic nematodes and offers opportunities to control these pathogens. CONCLUSION Plant parasitic nematodes pose a serious threat to global food security of various economically important crops. There is a wealth of genomic and transcriptomic information available on plant parasitic nematodes and comparative genomics has identified many effectors. Bioengineering crops with dsRNA of phytonematode genes can disrupt the life cycle of parasitic nematodes and therefore holds great promise to develop resistant crops against plant-parasitic nematodes.
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Affiliation(s)
- Sajid Rehman
- />International Center for Agriculture Research in the Dry Areas (ICARDA), Rabat-Instituts-Morocco, P.O.Box 6299, Rabat, Morocco
| | - Vijai K. Gupta
- />National University of Ireland Galway, Galway, Ireland
| | - Aakash K. Goyal
- />International Center for Agriculture Research in the Dry Areas (ICARDA), Rabat-Instituts-Morocco, P.O.Box 6299, Rabat, Morocco
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Davies LJ, Brown CR, Elling AA. Calcium is involved in the R Mc1 (blb)-mediated hypersensitive response against Meloidogyne chitwoodi in potato. PLANT CELL REPORTS 2015; 34:167-77. [PMID: 25315813 DOI: 10.1007/s00299-014-1697-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2014] [Revised: 09/29/2014] [Accepted: 10/07/2014] [Indexed: 05/08/2023]
Abstract
Functional characterization of the Columbia root-knot nematode resistance gene R Mc1 ( blb ) in potato revealed the R gene-mediated resistance is dependent on a hypersensitive response and involves calcium. The resistance (R) gene R Mc1(blb) confers resistance against the plant-parasitic nematode, Meloidogyne chitwoodi. Avirulent and virulent nematodes were used to functionally characterize the R Mc1(blb)-mediated resistance mechanism in potato (Solanum tuberosum). Histological observations indicated a hypersensitive response (HR) occurred during avirulent nematode infection. This was confirmed by quantifying reactive oxygen species activity in response to avirulent and virulent M. chitwoodi. To gain an insight into the signal transduction pathways mediating the R Mc1(blb)-induced HR, chemical inhibitors were utilized. Inhibiting Ca(2+) channels caused a significant reduction in electrolyte leakage, an indicator of cell death. Labeling with a Ca(2+)-sensitive dye revealed high Ca(2+) levels in the root cells surrounding avirulent nematodes. Furthermore, the calcium-dependent protein kinase (CDPK), StCDPK4 had a higher transcript level in R Mc1(blb) potato roots infected with avirulent nematodes in comparison to roots infected with virulent M. chitwoodi. The results of this study indicate Ca(2+) plays a role in the R Mc1(blb)-mediated resistance against M. chitwoodi in potato.
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Affiliation(s)
- Laura J Davies
- Department of Plant Pathology, Washington State University, Pullman, WA, 99164, USA
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10
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Davies LJ, Zhang L, Elling AA. The Arabidopsis thaliana papain-like cysteine protease RD21 interacts with a root-knot nematode effector protein. NEMATOLOGY 2015. [DOI: 10.1163/15685411-00002897] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
The root-knot nematode Meloidogyne chitwoodi secretes effector proteins into the cells of host plants to manipulate plant-derived processes in order to achieve successful parasitism. Mc1194 is a M. chitwoodi effector that is highly expressed in pre-parasitic second-stage juvenile nematodes. Yeast two-hybrid assays revealed Mc1194 specifically interacts with a papain-like cysteine protease (PLCP), RD21A in Arabidopsis thaliana. Mc1194 interacts with both the protease and granulin domains of RD21A. PLCPs are targeted by effectors secreted by bacterial, fungal and oomycete pathogens and the hypersusceptibility of rd21-1 mutants to M. chitwoodi indicates RD21A plays a role in plant-parasitic nematode infection.
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Affiliation(s)
- Laura J. Davies
- Department of Plant Pathology, Washington State University, Pullman, WA 99164, USA
| | - Lei Zhang
- Department of Plant Pathology, Washington State University, Pullman, WA 99164, USA
| | - Axel A. Elling
- Department of Plant Pathology, Washington State University, Pullman, WA 99164, USA
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Dinh PTY, Brown CR, Elling AA. RNA Interference of Effector Gene Mc16D10L Confers Resistance Against Meloidogyne chitwoodi in Arabidopsis and Potato. PHYTOPATHOLOGY 2014; 104:1098-106. [PMID: 24835223 DOI: 10.1094/phyto-03-14-0063-r] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Meloidogyne chitwoodi, a quarantine pathogen, is a significant problem in potato-producing areas worldwide. In spite of considerable genetic diversity in wild potato species, no commercial potato cultivars with resistance to M. chitwoodi are available. Nematode effector genes are essential for the molecular interactions between root-knot nematodes and their hosts. Stable transgenic lines of Arabidopsis and potato (Solanum tuberosum) with resistance against M. chitwoodi were developed. RNA interference (RNAi) construct pART27(16D10i-2) was introduced into Arabidopsis thaliana and potato to express double-stranded RNA complementary to the putative M. chitwoodi effector gene Mc16D10L. Plant-mediated RNAi led to a significant level of resistance against M. chitwoodi in Arabidopsis and potato. In transgenic Arabidopsis lines, the number of M. chitwoodi egg masses and eggs was reduced by up to 57 and 67% compared with empty vector controls, respectively. Similarly, in stable transgenic lines of potato, the number of M. chitwoodi egg masses and eggs was reduced by up to 71 and 63% compared with empty vector controls, respectively. The relative transcript level of Mc16D10L was reduced by up to 76% in M. chitwoodi eggs and infective second-stage juveniles that developed on transgenic pART27(16D10i-2) potato, suggesting that the RNAi effect is systemic and heritable in M. chitwoodi.
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Dinh P, Dinh P, Zhang L, Dinh P, Zhang L, Brown C, Dinh P, Zhang L, Brown C, Elling A. Plant-mediated RNA interference of effector gene Mc16D10L confers resistance against Meloidogyne chitwoodi in diverse genetic backgrounds of potato and reduces pathogenicity of nematode offspring. NEMATOLOGY 2014. [DOI: 10.1163/15685411-00002796] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Meloidogyne chitwoodi is a major problem for potato production in the Pacific Northwest of the USA. In spite of long-term breeding efforts no commercial potato cultivars with resistance to M. chitwoodi exist to date. The resistance gene against M. chitwoodi has been introgressed from Solanum bulbocastanum into cultivated potato (S. tuberosum), but M. chitwoodi pathotypes are able to overcome this resistance. In this study, an RNA interference (RNAi) transgene targeting the M. chitwoodi effector gene Mc16D10L was introduced into potato cvs Russet Burbank and Désirée, and the advanced breeding line PA99N82-4, which carries the gene. Stable transgenic lines were generated for glasshouse infection assays. At 35 days after inoculation (DAI) with M. chitwoodi race 1 the number of egg masses (g root)−1 formed on RNAi lines of cvs Russet Burbank and Désirée was reduced significantly by up to 68% compared to empty vector control plants. At 55 DAI, the number of eggs was reduced significantly by up to 65%. In addition, RNAi of Mc16D10L significantly reduced the development of egg masses and eggs formed by the resistance-breaking M. chitwoodi pathotype Roza on PA99N82-4 by up to 47 and 44%, respectively. Importantly, the plant-mediated silencing effect of Mc16D10L was transmitted to M. chitwoodi offspring and significantly reduced pathogenicity in the absence of selection pressure on empty vector control plants. This finding suggests that the RNAi effect is stable and nematode infection decreases regardless of the genotype of the host once the RNAi process has been initiated in the nematode through a transgenic plant. In summary, plant-mediated down-regulation of effector gene Mc16D10L provides a promising new tool for molecular breeding against M. chitwoodi.
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Affiliation(s)
- Phuong T.Y. Dinh
- Department of Plant Pathology, Washington State University, Pullman, WA 99164, USA
| | - Phuong T.Y. Dinh
- Department of Plant Pathology, Washington State University, Pullman, WA 99164, USA
| | - Linhai Zhang
- Vegetable and Forage Crops Research Unit, United States Department of Agriculture, Agricultural Research Service, Prosser, WA 99350, USA
| | - Phuong T.Y. Dinh
- Department of Plant Pathology, Washington State University, Pullman, WA 99164, USA
| | - Linhai Zhang
- Vegetable and Forage Crops Research Unit, United States Department of Agriculture, Agricultural Research Service, Prosser, WA 99350, USA
| | - Charles R. Brown
- Vegetable and Forage Crops Research Unit, United States Department of Agriculture, Agricultural Research Service, Prosser, WA 99350, USA
| | - Phuong T.Y. Dinh
- Department of Plant Pathology, Washington State University, Pullman, WA 99164, USA
| | - Linhai Zhang
- Vegetable and Forage Crops Research Unit, United States Department of Agriculture, Agricultural Research Service, Prosser, WA 99350, USA
| | - Charles R. Brown
- Vegetable and Forage Crops Research Unit, United States Department of Agriculture, Agricultural Research Service, Prosser, WA 99350, USA
| | - Axel A. Elling
- Department of Plant Pathology, Washington State University, Pullman, WA 99164, USA
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