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Fabietti M, Mahmud M, Lotfi A. Channel-independent recreation of artefactual signals in chronically recorded local field potentials using machine learning. Brain Inform 2022; 9:1. [PMID: 34997378 PMCID: PMC8741911 DOI: 10.1186/s40708-021-00149-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Accepted: 12/23/2021] [Indexed: 11/13/2022] Open
Abstract
Acquisition of neuronal signals involves a wide range of devices with specific electrical properties. Combined with other physiological sources within the body, the signals sensed by the devices are often distorted. Sometimes these distortions are visually identifiable, other times, they overlay with the signal characteristics making them very difficult to detect. To remove these distortions, the recordings are visually inspected and manually processed. However, this manual annotation process is time-consuming and automatic computational methods are needed to identify and remove these artefacts. Most of the existing artefact removal approaches rely on additional information from other recorded channels and fail when global artefacts are present or the affected channels constitute the majority of the recording system. Addressing this issue, this paper reports a novel channel-independent machine learning model to accurately identify and replace the artefactual segments present in the signals. Discarding these artifactual segments by the existing approaches causes discontinuities in the reproduced signals which may introduce errors in subsequent analyses. To avoid this, the proposed method predicts multiple values of the artefactual region using long–short term memory network to recreate the temporal and spectral properties of the recorded signal. The method has been tested on two open-access data sets and incorporated into the open-access SANTIA (SigMate Advanced: a Novel Tool for Identification of Artefacts in Neuronal Signals) toolbox for community use.
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Affiliation(s)
- Marcos Fabietti
- Department of Computer Science, Nottingham Trent University, Clifton Lane, NG11 8NS, Nottingham, UK
| | - Mufti Mahmud
- Department of Computer Science, Nottingham Trent University, Clifton Lane, NG11 8NS, Nottingham, UK. .,Medical Technologies Innovation Facility, Nottingham Trent University, Clifton Lane, NG11 8NS, Nottingham, UK. .,Computing and Informatics Research Centre, Nottingham Trent University, Clifton Lane, NG11 8NS, Nottingham, UK.
| | - Ahmad Lotfi
- Department of Computer Science, Nottingham Trent University, Clifton Lane, NG11 8NS, Nottingham, UK
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Akter T, Ali MH, Khan MI, Satu MS, Uddin MJ, Alyami SA, Ali S, Azad AKM, Moni MA. Improved Transfer-Learning-Based Facial Recognition Framework to Detect Autistic Children at an Early Stage. Brain Sci 2021; 11:734. [PMID: 34073085 PMCID: PMC8230000 DOI: 10.3390/brainsci11060734] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2021] [Revised: 05/24/2021] [Accepted: 05/24/2021] [Indexed: 12/28/2022] Open
Abstract
Autism spectrum disorder (ASD) is a complex neuro-developmental disorder that affects social skills, language, speech and communication. Early detection of ASD individuals, especially children, could help to devise and strategize right therapeutic plan at right time. Human faces encode important markers that can be used to identify ASD by analyzing facial features, eye contact, and so on. In this work, an improved transfer-learning-based autism face recognition framework is proposed to identify kids with ASD in the early stages more precisely. Therefore, we have collected face images of children with ASD from the Kaggle data repository, and various machine learning and deep learning classifiers and other transfer-learning-based pre-trained models were applied. We observed that our improved MobileNet-V1 model demonstrates the best accuracy of 90.67% and the lowest 9.33% value of both fall-out and miss rate compared to the other classifiers and pre-trained models. Furthermore, this classifier is used to identify different ASD groups investigating only autism image data using k-means clustering technique. Thus, the improved MobileNet-V1 model showed the highest accuracy (92.10%) for k = 2 autism sub-types. We hope this model will be useful for physicians to detect autistic children more explicitly at the early stage.
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Affiliation(s)
- Tania Akter
- Department of Computer Science and Engineering, Jahangirnagar University, Savar, Dhaka 1342, Bangladesh; (T.A.); (M.H.A.)
- Department of Computer Science and Engineering, Gono Bishwabidyalay, Savar, Dhaka 1344, Bangladesh;
| | - Mohammad Hanif Ali
- Department of Computer Science and Engineering, Jahangirnagar University, Savar, Dhaka 1342, Bangladesh; (T.A.); (M.H.A.)
| | - Md. Imran Khan
- Department of Computer Science and Engineering, Gono Bishwabidyalay, Savar, Dhaka 1344, Bangladesh;
| | - Md. Shahriare Satu
- Department of Management Information Systems, Noakhali Science and Technology University, Sonapur, Noakhali 3814, Bangladesh;
| | - Md. Jamal Uddin
- Department of Computer Science and Engineering, Bangabandhu Sheikh Mujibur Rahman Science and Technology University, Gopalganj Town Road, Gopalgonj 8100, Bangladesh;
| | - Salem A. Alyami
- Department of Mathematics and Statistics, Imam Mohammad Ibn Saud Islamic University, Riyadh 13318, Saudi Arabia;
| | - Sarwar Ali
- Department of Electrical and Electronics Engineering, University of Rajshahi, Rajshahi 6205, Bangladesh;
| | - AKM Azad
- School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW 2052, Australia;
| | - Mohammad Ali Moni
- WHO Collaborating Centre on eHealth, UNSW Digital Health, Faculty of Medicine, University of New South Wales, Sydney, NSW 2052, Australia
- Healthy Aging Theme, Garvan Institute of Medical Research, Darlinghurst, NSW 2010, Australia
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Feature Analysis of EEG Based Brain-Computer Interfaces to Detect Motor Imagery. Brain Inform 2021. [DOI: 10.1007/978-3-030-86993-9_45] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
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Identifying Individuals Using EEG-Based Brain Connectivity Patterns. Brain Inform 2021. [DOI: 10.1007/978-3-030-86993-9_12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
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