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Kong Z, Zhou R, Luo X, Zhao S, Ragin AB, Leow AD, He L. TGNet: tensor-based graph convolutional networks for multimodal brain network analysis. BioData Min 2024; 17:55. [PMID: 39639334 PMCID: PMC11622555 DOI: 10.1186/s13040-024-00409-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2024] [Accepted: 11/21/2024] [Indexed: 12/07/2024] Open
Abstract
Multimodal brain network analysis enables a comprehensive understanding of neurological disorders by integrating information from multiple neuroimaging modalities. However, existing methods often struggle to effectively model the complex structures of multimodal brain networks. In this paper, we propose a novel tensor-based graph convolutional network (TGNet) framework that combines tensor decomposition with multi-layer GCNs to capture both the homogeneity and intricate graph structures of multimodal brain networks. We evaluate TGNet on four datasets-HIV, Bipolar Disorder (BP), and Parkinson's Disease (PPMI), Alzheimer's Disease (ADNI)-demonstrating that it significantly outperforms existing methods for disease classification tasks, particularly in scenarios with limited sample sizes. The robustness and effectiveness of TGNet highlight its potential for advancing multimodal brain network analysis. The code is available at https://github.com/rongzhou7/TGNet .
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Affiliation(s)
- Zhaoming Kong
- School of Software Engineering, South China University of Technology, 382 Waihuan Dong Road, Guangzhou, 510006, China
| | - Rong Zhou
- Department of Computer Science and Engineering, Lehigh University, 113 Research Drive, Bethlehem, 18015, PA, USA
| | - Xinwei Luo
- Department of Computer Science and Engineering, Lehigh University, 113 Research Drive, Bethlehem, 18015, PA, USA
| | - Songlin Zhao
- Department of Computer Science and Engineering, Lehigh University, 113 Research Drive, Bethlehem, 18015, PA, USA
| | - Ann B Ragin
- Department of Radiology, Northwestern University, 737 N. Michigan Avenue, Chicago, 60611, IL, USA
| | - Alex D Leow
- Department of Psychiatry, University of Illinois Chicago, 1601 W. Taylor Street, Chicago, 60612, IL, USA
| | - Lifang He
- Department of Computer Science and Engineering, Lehigh University, 113 Research Drive, Bethlehem, 18015, PA, USA.
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Bessadok A, Mahjoub MA, Rekik I. Graph Neural Networks in Network Neuroscience. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE 2023; 45:5833-5848. [PMID: 36155474 DOI: 10.1109/tpami.2022.3209686] [Citation(s) in RCA: 30] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Noninvasive medical neuroimaging has yielded many discoveries about the brain connectivity. Several substantial techniques mapping morphological, structural and functional brain connectivities were developed to create a comprehensive road map of neuronal activities in the human brain -namely brain graph. Relying on its non-euclidean data type, graph neural network (GNN) provides a clever way of learning the deep graph structure and it is rapidly becoming the state-of-the-art leading to enhanced performance in various network neuroscience tasks. Here we review current GNN-based methods, highlighting the ways that they have been used in several applications related to brain graphs such as missing brain graph synthesis and disease classification. We conclude by charting a path toward a better application of GNN models in network neuroscience field for neurological disorder diagnosis and population graph integration. The list of papers cited in our work is available at https://github.com/basiralab/GNNs-in-Network-Neuroscience.
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Oyarzun Laura C, Wesarg S, Sakas G. Graph matching survey for medical imaging: On the way to deep learning. Methods 2021; 202:3-13. [PMID: 34216788 DOI: 10.1016/j.ymeth.2021.06.008] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Revised: 05/18/2021] [Accepted: 06/11/2021] [Indexed: 11/18/2022] Open
Abstract
The interest on graph matching has not stopped growing since the late seventies. The basic idea of graph matching consists of generating graph representations of different data or structures and compare those representations by searching correspondences between them. There are manifold techniques that have been developed to find those correspondences and the choice of one or another depends on the characteristics of the application of interest. These applications range from pattern recognition (e.g. biometric identification) to signal processing or artificial intelligence. One of the aspects that make graph matching so attractive is its ability to facilitate data analysis, and medical imaging is one of the fields that can benefit from this in a greater extent. The potential of graph matching to find similarities and differences between data acquired at different points in time shows its potential to improve diagnosis, follow-up of human diseases or any other of the clinical scenarios that require comparison between different datasets. In spite of the large amount of papers that were published in this field to the date there is no survey paper of graph matching for clinical applications. This survey aims to fill this gap.
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Affiliation(s)
- Cristina Oyarzun Laura
- Visual Healthcare Technologies, Fraunhofer Institute for Computer Graphics Research IGD, Germany.
| | - Stefan Wesarg
- Visual Healthcare Technologies, Fraunhofer Institute for Computer Graphics Research IGD, Germany
| | - Georgios Sakas
- Interactive Graphics Systems Group, Technical University of Darmstadt, Germany
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