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Emerce E, Ghosh M, Öner D, Duca RC, Vanoirbeek J, Bekaert B, Hoet PHM, Godderis L. Carbon Nanotube- and Asbestos-Induced DNA and RNA Methylation Changes in Bronchial Epithelial Cells. Chem Res Toxicol 2019; 32:850-860. [PMID: 30990028 DOI: 10.1021/acs.chemrestox.8b00406] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Carbon nanotubes (CNTs) are nanoscale tube-shaped carbon materials used in many industrial areas. Their fiber shape has caused concerns about their toxicity given their structural similarity with asbestos. The aim here was to elucidate the effect of CNTs and asbestos exposure on global DNA and RNA methylation and the methylation of genes associated with cell cycle, inflammation, and DNA damage processes in human lung cells. Human bronchial epithelial cells (16HBE14o-) were exposed for 24 h to 25 and 100 μg/mL CNTs (single-walled CNTs [SWCNTs] and multiwalled CNTs [MWCNTs]) and 2.5 μg/mL asbestos (chrysotile, amosite, and crocidolite). Global DNA and RNA (hydroxy)methylation to cytosines was measured by a validated liquid chromatography tandem-mass spectrometry method. Global RNA methylation to adenines was measured by a colorimetric ELISA-like assay. Gene-specific DNA methylation status at certain cytosine-phosphate-guanine (CpG) sites of cyclin-dependent kinase inhibitor 1A ( CDKN1A), serine/threonine kinase ( ATM), and TNF receptor-associated factor 2 ( TRAF2) were analyzed by using bisulfite pyrosequencing technology. Only MWCNT-exposed cells showed significant global DNA hypomethylation of cytosine and global RNA hypomethylation of adenosine. SWCNT, MWCNT, and amosite exposure decreased DNA methylation of CDKN1A. ATM methylation was affected by chrysotile, SWCNT, and MWCNT. However, SWCNT exposure led to DNA hypermethylation of TRAF2. These findings contribute to further understanding of the effect of CNTs on different carcinogenic pathways.
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Affiliation(s)
- Esra Emerce
- Department of Public Health and Primary Care, Unit of Environment and Health , KU Leuven , 3000 Leuven , Belgium.,Department of Toxicology, Faculty of Pharmacy , Gazi University , 06560 Ankara , Turkey
| | - Manosij Ghosh
- Department of Public Health and Primary Care, Unit of Environment and Health , KU Leuven , 3000 Leuven , Belgium
| | - Deniz Öner
- Department of Public Health and Primary Care, Unit of Environment and Health , KU Leuven , 3000 Leuven , Belgium
| | - Radu-Corneliu Duca
- Department of Public Health and Primary Care, Unit of Environment and Health , KU Leuven , 3000 Leuven , Belgium
| | - Jeroen Vanoirbeek
- Department of Public Health and Primary Care, Unit of Environment and Health , KU Leuven , 3000 Leuven , Belgium
| | - Bram Bekaert
- Forensic Biomedical Sciences, Department of Imaging and Pathology , KU Leuven - University of Leuven , 3000 Leuven , Belgium.,Department of Forensic Medicine, Laboratory of Forensic Genetics and Molecular Archaeology , University Hospitals Leuven , 3000 Leuven , Belgium
| | - Peter H M Hoet
- Department of Public Health and Primary Care, Unit of Environment and Health , KU Leuven , 3000 Leuven , Belgium
| | - Lode Godderis
- Department of Public Health and Primary Care, Unit of Environment and Health , KU Leuven , 3000 Leuven , Belgium.,External Service for Prevention and Protection at Work , IDEWE , B-3001 Leuven , Belgium
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Öner D, Ghosh M, Moisse M, Duca RC, Coorens R, Vanoirbeek JAJ, Lambrechts D, Godderis L, Hoet PHM. Global and gene-specific DNA methylation effects of different asbestos fibres on human bronchial epithelial cells. ENVIRONMENT INTERNATIONAL 2018; 115:301-311. [PMID: 29626692 DOI: 10.1016/j.envint.2018.03.031] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2017] [Revised: 03/19/2018] [Accepted: 03/20/2018] [Indexed: 06/08/2023]
Abstract
Inhalation exposure to asbestos is associated with lung and pleural diseases in humans and remains a major public health issue worldwide. Human bronchial epithelial cells (16HBE) were exposed to UICC amosite, crocidolite and chrysotile. Cytotoxicity, genotoxicity, global DNA methylation on cytosine residues (using LC-MS/MS) were investigated at different doses (2.5-100 μg/ml). Gene-specific DNA methylation alterations at the whole genome were investigated using a microarray that interrogates >450 thousand CpG sites. Subsequently, gene functional analyses (KEGG pathway, Gene Ontology and functional classification) were performed on genes with differentially methylated gene promoters. At non-cytotoxic doses, global DNA methylation was altered after 24 h exposure to amosite and crocidolite (>2.5 μg/ml). Exposure to amosite and crocidolite (amphibole type asbestos) induced both hypomethylation and hypermethylation at single CpG site and gene promoter levels whereas exposure to chrysotile (serpentine type asbestos) induced hypomethylation at the gene promoter level. Gene functional classification analyses revealed that all types of asbestos fibres induce alterations on GO-clusters i.e. on regulation of Rho-protein signal transduction, nucleus, (e.g. homeobox genes), ATP-binding function and extracellular region (e.g. WNT-group of genes). These differentially methylated genes might contribute to asbestos-related diseases in bronchial cells.
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Affiliation(s)
- Deniz Öner
- KU Leuven, Department of Public Health and Primary Care, Unit of Environment and Health, Laboratory of Toxicology, 3000 Leuven, Belgium
| | - Manosij Ghosh
- KU Leuven, Department of Public Health and Primary Care, Unit of Environment and Health, Laboratory of Toxicology, 3000 Leuven, Belgium
| | - Matthieu Moisse
- KU Leuven, Department of Human Genetics, Laboratory for Translational Genetics, Leuven, Belgium; VIB, VIB Center for Cancer Biology, Laboratory for Translational Genetics, Leuven, Belgium
| | - Radu Corneliu Duca
- KU Leuven, Department of Public Health and Primary Care, Unit of Environment and Health, Laboratory for Occupational and Environmental Hygiene, 3000 Leuven, Belgium
| | - Robin Coorens
- KU Leuven, Department of Public Health and Primary Care, Unit of Environment and Health, Laboratory of Toxicology, 3000 Leuven, Belgium
| | - Jeroen A J Vanoirbeek
- KU Leuven, Department of Public Health and Primary Care, Unit of Environment and Health, Laboratory of Toxicology, 3000 Leuven, Belgium; KU Leuven, Department of Public Health and Primary Care, Unit of Environment and Health, Laboratory for Occupational and Environmental Hygiene, 3000 Leuven, Belgium
| | - Diether Lambrechts
- KU Leuven, Department of Human Genetics, Laboratory for Translational Genetics, Leuven, Belgium; VIB, VIB Center for Cancer Biology, Laboratory for Translational Genetics, Leuven, Belgium
| | - Lode Godderis
- KU Leuven, Department of Public Health and Primary Care, Unit of Environment and Health, Laboratory for Occupational and Environmental Hygiene, 3000 Leuven, Belgium; Idewe, External Service for Prevention and Protection at Work, B-3001 Leuven, Belgium
| | - Peter H M Hoet
- KU Leuven, Department of Public Health and Primary Care, Unit of Environment and Health, Laboratory of Toxicology, 3000 Leuven, Belgium.
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