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Robinson K, Li H, Lan L, Schacht D, Giger M. Radiomics robustness assessment and classification evaluation: A two-stage method demonstrated on multivendor FFDM. Med Phys 2019; 46:2145-2156. [PMID: 30802972 DOI: 10.1002/mp.13455] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2018] [Revised: 02/12/2019] [Accepted: 02/13/2019] [Indexed: 12/22/2022] Open
Abstract
PURPOSE Radiomic texture analysis is typically performed on images acquired under specific, homogeneous imaging conditions. These controlled conditions may not be representative of the range of imaging conditions implemented clinically. We aim to develop a two-stage method of radiomic texture analysis that incorporates the reproducibility of individual texture features across imaging conditions to guide the development of texture signatures which are robust across mammography unit vendors. METHODS Full-field digital mammograms were retrospectively collected for women who underwent screening mammography on both a Hologic Lorad Selenia and GE Senographe 2000D system. Radiomic features were calculated on manually placed regions of interest in each image. In stage one (robustness assessment), we identified a set of nonredundant features that were reproducible across the two different vendors. This was achieved through hierarchical clustering and application of robustness metrics. In stage two (classification evaluation), we performed stepwise feature selection and leave-one-out quadratic discriminant analysis (QDA) to construct radiomic signatures. We refer to this two-state method as robustness assessment, classification evaluation (RACE). These radiomic signatures were used to classify the risk of breast cancer through receiver operator characteristic (ROC) analysis, using the area under the ROC curve as a figure of merit in the task of distinguishing between women with and without high-risk factors present. Generalizability was investigated by comparing the classification performance of a feature set on the images from which they were selected (intravendor) to the classification performance on images from the vendor on which it was not selected (intervendor). Intervendor and intravendor performances were also compared to the performance obtained by implementing ComBat, a feature-level harmonization method and to the performance by implementing ComBat followed by RACE. RESULTS Generalizability, defined as the difference between intervendor and intravendor classification performance, was shown to monotonically decrease as the number of clusters used in stage one increased (Mann-Kendall P < 0.001). Intravendor performance was not shown to be statistically different from ComBat harmonization while intervendor performance was significantly higher than ComBat. No significant difference was observed between either of the single methods and the use of ComBat followed by RACE. CONCLUSIONS A two-stage method for robust radiomic signature construction is proposed and demonstrated in the task of breast cancer risk assessment. The proposed method was used to assess generalizability of radiomic texture signatures at varying levels of feature robustness criteria. The results suggest that generalizability of feature sets monotonically decreases as reproducibility of features decreases. This trend suggests that considerations of feature robustness in feature selection methodology could improve classifier generalizability in multifarious full-field digital mammography datasets collected on various vendor units. Additionally, harmonization methods such as ComBat may hold utility in classification schemes and should continue to be investigated.
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Affiliation(s)
- Kayla Robinson
- Committee on Medical Physics, Department of Radiology, University of Chicago, MC 2026, 5841 South Maryland Avenue, Chicago, IL, 60637, USA
| | - Hui Li
- Committee on Medical Physics, Department of Radiology, University of Chicago, MC 2026, 5841 South Maryland Avenue, Chicago, IL, 60637, USA
| | - Li Lan
- Committee on Medical Physics, Department of Radiology, University of Chicago, MC 2026, 5841 South Maryland Avenue, Chicago, IL, 60637, USA
| | - David Schacht
- Committee on Medical Physics, Department of Radiology, University of Chicago, MC 2026, 5841 South Maryland Avenue, Chicago, IL, 60637, USA
| | - Maryellen Giger
- Committee on Medical Physics, Department of Radiology, University of Chicago, MC 2026, 5841 South Maryland Avenue, Chicago, IL, 60637, USA
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McCarthy AM, Keller BM, Pantalone LM, Hsieh MK, Synnestvedt M, Conant EF, Armstrong K, Kontos D. Racial Differences in Quantitative Measures of Area and Volumetric Breast Density. J Natl Cancer Inst 2016; 108:djw104. [PMID: 27130893 PMCID: PMC5939658 DOI: 10.1093/jnci/djw104] [Citation(s) in RCA: 60] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2015] [Revised: 01/29/2016] [Accepted: 03/09/2016] [Indexed: 12/12/2022] Open
Abstract
BACKGROUND Increased breast density is a strong risk factor for breast cancer and also decreases the sensitivity of mammographic screening. The purpose of our study was to compare breast density for black and white women using quantitative measures. METHODS Breast density was assessed among 5282 black and 4216 white women screened using digital mammography. Breast Imaging-Reporting and Data System (BI-RADS) density was obtained from radiologists' reports. Quantitative measures for dense area, area percent density (PD), dense volume, and volume percent density were estimated using validated, automated software. Breast density was categorized as dense or nondense based on BI-RADS categories or based on values above and below the median for quantitative measures. Logistic regression was used to estimate the odds of having dense breasts by race, adjusted for age, body mass index (BMI), age at menarche, menopause status, family history of breast or ovarian cancer, parity and age at first birth, and current hormone replacement therapy (HRT) use. All statistical tests were two-sided. RESULTS There was a statistically significant interaction of race and BMI on breast density. After accounting for age, BMI, and breast cancer risk factors, black women had statistically significantly greater odds of high breast density across all quantitative measures (eg, PD nonobese odds ratio [OR] = 1.18, 95% confidence interval [CI] = 1.02 to 1.37, P = .03, PD obese OR = 1.26, 95% CI = 1.04 to 1.53, P = .02). There was no statistically significant difference in BI-RADS density by race. CONCLUSIONS After accounting for age, BMI, and other risk factors, black women had higher breast density than white women across all quantitative measures previously associated with breast cancer risk. These results may have implications for risk assessment and screening.
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Affiliation(s)
- Anne Marie McCarthy
- Department of Medicine, Massachusetts General Hospital, Boston, MA (AMM, KA); Department of Radiology, University of Pennsylvania, Philadelphia, PA (BMK, LMP, MKH, MS, EFC, DK)
| | - Brad M Keller
- Department of Medicine, Massachusetts General Hospital, Boston, MA (AMM, KA); Department of Radiology, University of Pennsylvania, Philadelphia, PA (BMK, LMP, MKH, MS, EFC, DK)
| | - Lauren M Pantalone
- Department of Medicine, Massachusetts General Hospital, Boston, MA (AMM, KA); Department of Radiology, University of Pennsylvania, Philadelphia, PA (BMK, LMP, MKH, MS, EFC, DK)
| | - Meng-Kang Hsieh
- Department of Medicine, Massachusetts General Hospital, Boston, MA (AMM, KA); Department of Radiology, University of Pennsylvania, Philadelphia, PA (BMK, LMP, MKH, MS, EFC, DK)
| | - Marie Synnestvedt
- Department of Medicine, Massachusetts General Hospital, Boston, MA (AMM, KA); Department of Radiology, University of Pennsylvania, Philadelphia, PA (BMK, LMP, MKH, MS, EFC, DK)
| | - Emily F Conant
- Department of Medicine, Massachusetts General Hospital, Boston, MA (AMM, KA); Department of Radiology, University of Pennsylvania, Philadelphia, PA (BMK, LMP, MKH, MS, EFC, DK)
| | - Katrina Armstrong
- Department of Medicine, Massachusetts General Hospital, Boston, MA (AMM, KA); Department of Radiology, University of Pennsylvania, Philadelphia, PA (BMK, LMP, MKH, MS, EFC, DK)
| | - Despina Kontos
- Department of Medicine, Massachusetts General Hospital, Boston, MA (AMM, KA); Department of Radiology, University of Pennsylvania, Philadelphia, PA (BMK, LMP, MKH, MS, EFC, DK)
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