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Zhou S, Du G, Kang Z, Li J, Chen J, Li H, Zhou J. The application of powerful promoters to enhance gene expression in industrial microorganisms. World J Microbiol Biotechnol 2017; 33:23. [DOI: 10.1007/s11274-016-2184-3] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2016] [Accepted: 11/24/2016] [Indexed: 01/01/2023]
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Wang L, Qian K, Huang Y, Jin N, Lai H, Zhang T, Li C, Zhang C, Bi X, Wu D, Wang C, Wu H, Tan P, Lu J, Chen L, Li K, Li X, Wang D. SynBioLGDB: a resource for experimentally validated logic gates in synthetic biology. Sci Rep 2015; 5:8090. [PMID: 25627341 PMCID: PMC4308699 DOI: 10.1038/srep08090] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2014] [Accepted: 12/18/2014] [Indexed: 11/09/2022] Open
Abstract
Synthetic biologists have developed DNA/molecular modules that perform genetic logic operations in living cells to track key moments in a cell's life or change the fate of a cell. Increasing evidence has also revealed that diverse genetic logic gates capable of generating a Boolean function play critically important roles in synthetic biology. Basic genetic logic gates have been designed to combine biological science with digital logic. SynBioLGDB (http://bioinformatics.ac.cn/synbiolgdb/) aims to provide the synthetic biology community with a useful resource for efficient browsing and visualization of genetic logic gates. The current version of SynBioLGDB documents more than 189 genetic logic gates with experimental evidence involving 80 AND gates and 16 NOR gates, etc. in three species (Human, Escherichia coli and Bacillus clausii). SynBioLGDB provides a user-friendly interface through which conveniently to query and browse detailed information about these genetic logic gates. SynBioLGDB will enable more comprehensive understanding of the connection of genetic logic gates to execute complex cellular functions in living cells.
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Affiliation(s)
- Liqiang Wang
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
| | - Kun Qian
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
| | - Yan Huang
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
| | - Nana Jin
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
| | - Hongyan Lai
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
| | - Ting Zhang
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
| | - Chunhua Li
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
| | - Chunrui Zhang
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
| | - Xiaoman Bi
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
| | - Deng Wu
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
| | - Changliang Wang
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
| | - Hao Wu
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
| | - Puwen Tan
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
| | - Jianping Lu
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
| | - Liqun Chen
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
| | - Kongning Li
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
| | - Xia Li
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
| | - Dong Wang
- College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
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