In vitro synthesis of barley storage proteins

Molecular biology of the grain storage proteins of the Triticeae

Chemical studies show that there are close relationships between the storage proteins of the Triticeae. We have investigated these relationships by the study of the synthesis of the proteins in vivo and in vitro , and by making libraries of double-stranded complementary DNA (cDNA) derived from poly A + RNA isolated from developing endosperms of barley, wheat and rye. These cDNA clones have been used to probe the organization and regulation of expression of the Hor loci in barley. The results suggest that regulation of synthesis is generally achieved by changes in the amounts of mRNA for the different proteins, both in response to time of development and the relative supply of sulphur and nitrogen, although there may also be differences in the relative amounts of mRNA translated. The sequencing of the cDNA clones has shown the im portance of repeated sequences in the evolution of prolamin genes.

Primary structure of a C-hordein gene from barley

The nucleotide sequence of a 2065 base pair HindIII fragment, containing a gene (lambda hor1-14) belonging to the Hor1 locus in barley, has been determined. The fragment consists of 1044 bp of coding region interrupted by an amber codon at base 481, a 5' non-coding region of 428 bp and a 3' non-coding region with 593 bp. The deduced amino acid sequence of the mature protein (327 amino acids) is characterized by an octapeptide motif PQQPFPQQ which is repeated throughout the peptide chain between a unique 12 amino acid long NH2-terminal and an equally unique 10 amino acid long COOH-terminal end. The proline + glutamine content is 62% and the next three most abundant amino acids are leucine (9%), phenylalanine (8%) and isoleucine (3%). In the 5' non-coding region there is a TATA box at -98 bp from the start methionine. The 3' non-coding region has a polyadenylation signal 76 bp downstream from the TAA stop codon. The deduced amino acid sequences of the NH2- and COOH-terminals of lambda hor1-14 are very similar but not identical to those known from the Edman degradation and carboxypeptidase Y analysis of C-hordein polypeptides. The 3' coding and non-coding region of lambda hor1-14 is closely similar but different in detail to the known C-hordein cDNA clones. One polyadenylation signal is found in lambda hor1-14 whereas two are present in each of the three known C-hordein cDNAs. These differences and the amber codon interrupting the open reading frame indicate that this gene is silent.

Selective expression of a probable amylase/protease inhibitor in barley aleurone cells: Comparison to the barley amylase/subtilisin inhibitor

We have cloned and sequenced a 650-nucleotide cDNA from barley (Hordeum vulgare L.) aleurone layers encoding a protein that is closely related to a known α-amylase inhibitor from Indian finger millet (Eleusine coracana Gaertn.), and that has homologies to certain plant trypsin inhibitors. mRNA for this probable amylase/protease inhibitor (PAPI) is expressed primarily in aleurone tissue during late development of the grain, as compared to that for the amylase/subtilisin inhibitor, which is expressed in endosperm during the peak of storage-protein synthesis. PAPI mRNA is present at high levels in aleurone tissue of desiccated, mature grain, and in incubated aleurone layers prepared from rehydrated mature seeds. Its expression in those layers is not affected by either abscisic acid or gibberellic acid, hormones that, respectively, increase and decrease the abundance of mRNA for the amylase/subtilisin inhibitor. PAPI mRNA is almost as abundant in gibberellic acid-treated aleurone layers as that for α-amylase, and PAPI protein is synthesized in that tissue at levels that are comparable to α-amylase. PAPI protein is secreted from aleurone layers into the incubation medium.

Polymorphism at the Hor 1 locus of barley (Hordeum vulgare L.)

The Hor 1 locus of barley encodes a group of seed storage polypeptides called C hordein. Two-dimensional electrophoretic analysis of C-hordein fractions from six cultivars with different alleles at the Hor 1 locus showed extensive polymorphism. A total of 34 major polypeptides was mapped, with between 4 and 18 present in each cultivar. There was less variation among the same cultivars in the numbers (6 to 10) of restriction fragments of genomic DNA which hybridized to a cDNA clone related to C hordein. The total number of restriction fragments was also lower (22), and most pairs of cultivars had more restriction fragments than polypeptides in common. A total number of about 20-30 C-hordein genes per haploid genome was estimated. The results indicate that cultivars differ mainly in the extent of gene and polypeptide divergence, rather than in the degree of gene reiteration. They are consistent with the proposed origin of the multiple structural genes at the Hor 1 locus by the duplication and divergence of a single ancestral gene.

Molecular analysis of the effects of the lys 3a gene on the expression of Hor loci in developing endosperms of barley (Hordeum vulgare L.)

The lys 3a gene present in the barley mutant Ris phi 1508 results in an increased content of lysine in the grain. Previous studies have shown that this increase results from a decreased accumulation of hordein and an increase in other more lysine-rich proteins and in free amino acids. We report here a detailed examination of the effects of this gene on the different groups of hordein polypeptides and the mRNAs encoding them. The amounts of the two major groups of hordein polypeptides (B and C hordein ) were reduced to about 20 and 7%, respectively, of those present in the parental variety ( Bomi ), with a greater effect on one of the two subfamilies of B polypeptides. In contrast, the amounts of D hordein polypeptides were increased fourfold. In vitro translations of polysomal and total cellular RNA fractions showed similar effects on the relative amounts of hordein products synthesized. More detailed analyses of the populations of hordein mRNAs were made using specific cDNA clones and hybrid-selection translation, Northern hybridization, and "hybrid-dot" analysis. Only traces of mRNAs for "C" hordein were detected, while the abundances of mRNAs for the two subfamilies of B hordeins were reduced to 40 and 5% of those in Bomi . The amount of mRNA for D hordein was increased twofold. A cDNA clone related to B hordein was used to analyze genomic DNA fractions by Southern hybridization. The lys 3a gene had no effect on either the number (about 10) or the organization of the B hordein genes. These studies clearly demonstrate that the effects of the lys 3a gene on the amounts of the hordein polypeptides are closely related to changes in the amounts of the mRNAs encoding them. Although the exact effect of the gene remains unknown, it is most likely to be either at transcription or on the early processing of the mRNA.

Nutritional control of storage-protein synthesis in developing grain of barley (Hordeum vulgare L.)

Sulphur starvation of barley results in decreased accumulation of the "sulphur-rich" B-hordein polypeptides, with little or no effect on the 'sulphur-poor' C hordeins. The populations of mRNAs for C hordeins and the two major subfamilies of B-hordein polypeptides have been assessed by in-vitro translations in a wheat-germ extract and by 'dot' hybridisations to (32)P-labelled B- and C-hordein complementary-DNA clones. The results show that the relative changes in the rates of accumulation of the three groups of polypeptides are correlated with similar changes in the abundances of their respective mRNAs. In addition, the deficiency of sulphur also appears to increase the efficiency of translation of C-hordein mRNA and to decrease the efficiency of translation of the B-hordein mRNAs. Thus the results indicate that there may be two components to the effect of sulphur deficiency on hordein accumulation, one acting at the level of transcription, or mRNA degradation, and one at the level of translation.

The synthesis and deposition of the prolamin storage proteins (secalins) of rye

The synthesis and deposition of the endosperm storage proteins of rye, usually termed secalins, has been studied. The rate of accumulation of secalin in developing rye grain was at a maximum between 3 and 5 weeks after anthesis. Some changes in the proportions of the four major groups of secalin polypeptides were observed during maturation, notably an increase in γ-secalins of Mr 75k and a decrease in ω-secalins. In-vitro translation of mRNA fractions prepared from 4-week-old endosperms showed that secalin polypeptides were synthesised on membrane-bound polysomes. The secalin products were identified by their mobilities on SDS-PAGE and their relative incorporation of radioactive lysine, glycine, proline, leucine and methionine. Protein bodies prepared by sucrose density ultracentrifugation contained reduced amounts of γ-secalins of Mr 40k and ω-secalins compared with the total secalin fraction, but these components were present in the expected amounts when 1.0 M NaCl was added to the buffers. Treatment of the protein bodies with proteinase-k resulted in the digestion of their contents regardless of the presence of NaCl, indicating that the surrounding membrane was incomplete. It was concluded that the NaCl reduced the loss of secalins from the protein bodies by decreasing secalin solubility rather than by affecting the integrity of the protein body membrane. The results reported for the synthesis and deposition of secalins are consistent with the results of previous studies on the prolamins of wheat and barley.

Isolation of intact polysomes from mechanically dehulled developing grain

A rapid method for obtaining large quantities of developing groats suitable for the isolation of highly intact polysomes has been developed. Developing spikelets were harvested directly from oat panicles into liquid nitrogen and then quickly passed through a dehuller. Chaff was removed by air aspiration and the resultant groats were collected directly back into liquid nitrogen. Approximately 250 g of groats could be isolated each man-hour by the above method. In comparison, only 10 g of endosperm could be collected by squeezing it out of spikelets using an endosperm mangle. Membrane-bound polysomes extracted from the immature groats were compared to those extracted from endosperm. The largest polysomes discernable as unique peaks on sucrose gradients were ten-mers and nine-mers for groats and endosperm, respectively. Polysomes isolated from both starting materials stimulated similar incorporations of [35S]methionine into trichloroacetic acid-insoluble products during in vitro translations in wheat germ extract. Both polysome preparations directed the synthesis of similar high-molecular-weight proteins. Based on these criteria, polysomes from both preparations were found to be of similar intactness, although the groat starting material was much more readily obtained. The polysome classes having the maximum absorbance peak for endosperm and groat polysomes were six-mers and eight-mers, respectively.

Isolation and identification of mRNA for the high-molecular-weight storage proteins of wheat endosperm

The prolamin storage proteins of the wheat endosperm contain a sub-class of high-molecular-weight (HMW) polypeptides which have been implicated in determining breadmaking quality. Membrane-bound polysomes isolated from developing wheat endosperms contain mRNA for these HMW components. Although unfractionated polyadenylated RNA derived from the polysomes did not direct the synthesis of these components in an in-vitro wheat-germ system, it did when incubated with a rabbit reticulocyte lysate system. Identification of the translation products as HMW prolamins was based on their large incorporation of [(3)H]leucine and [(3)H]glycine relative to [(3)H]lysine, their mobility on polyacrylamide-gel electrophoresis and the observation that the changes of mobility in response to change in wheat genotype were the same as those observed for the authentic protein. The mRNA was fractionated by electrophoresis and density-gradient centrifugation. The mRNA for the HMW prolamins was found to have a relative molecular mass of about 1.6·10(6).

Plant seed embryogenesis as a tool for molecular biology

Aspects of the embryogenesis of higher plants that are of interest to molecular and cell biologists are reviewed. What is known about the changing population of developmentally regulated mRNA is summarized, and the properties of the gene products that most distinguish embryogenesis, the nutritional storage proteins, are collated.

In vivo and in vitro synthesis of CM-proteins (A-hordeins) from barley (Hordeum vulgare L.)

CM-proteins from barley endosperm (CMa, CMb, CMc, CMd), which are the main components of the A-hordein fraction, are synthesized most actively 10 to 30 d after anthesis (maximum at 15-20 d). They are synthesized by membranebound polysomes as precursors of higher apparent molecular weight (13,000-21,000) than the mature proteins (12,000-16,000). The largest in vitro product (21,000) is the putative precursor of protein CMd (16,000), as it is selected with anti-CMd monospecific IgG's, and is coded by an mRNA of greater sedimentation coefficient (9 S) than those encoding the other three proteins (7.5 S). CM-proteins always appear in the soluble fraction, following different homogenization and subcellular fractionation procedures, indicating that these proteins are transferred to the soluble fraction after processing.

The endosperms of common cereals contain related poly A (+)RNA sequences

mRNA has been isolated from the developing endosperms of four Triticeae species. Wheat endosperm mRNA has been used as a template to construct a bank of cDNA plasmid clones. More than 95% of these clones hybridized strongly to endosperm poly A(+)RNA but not to shoot poly A(+)RNA. (32)P-labelled mRNA from species related to wheat was used in filter hybridizations to detect inter-species sequence homologies. The wheat cDNA clones can be grouped into 4 classes: clones hybridizing to wheat RNA only, clones cross-hybridizing to barley endosperm poly A (+)RNA, clones cross-hybridizing to rye endosperm poly A(+) RNA, and clones showing homology to both barley and to rye RNA. Some of the sequence homology has been assigned to storage protein mRNA sequences.

Structural homology of storage proteins coded by the Hor-1 locus of barley (Hordeum vulgare L.)

Three 'C' hordein fractions were prepared by ion-exchange chromatography of a total hordein preparation on carboxymethyl cellulose at pH 4.6 Polyacrylamide gel electrophoresis at pH 3.2 and sodium dodecylsulfate polyacrylamide gel electrophoresis (SDS-PAGE) at pH 8.9 showed that each fraction contained a single major band. The apparent molecular weights of these were determined by SDS-PAGE as 58, 57, and 54,000. When compared by isoelectric focusing, however, the 58 and 57,000 components each separated into two major bands and the 54,000 component into four. Amino acid analysis showed that although the three fractions had similar compositions with high glutamate+glutamine (38-39%), proline (30-32%) and phenylalanine (8-9%) contents, some differences were present, notably in the relative content of lysine. The three fractions had identical amino acid sequences for the first ten residues at the N-terminal end. They also had identical sequences for the first five residues at the C-terminal end, with the exception that a mixture of two amino acids were released from position 4 of the 58,000 fraction only. Peptide mapping with three enzymes (trypsin, chymotrypsin and V8 protease) indicated that the 58 and 57,000 fractions were more closely related to each other than to the 54,000 fraction. It is suggested that the 57 and 58,000 fractions and the 54,000 fraction constitute two families of closely related polypeptides which are coded by genes derived from the duplication and divergence of a single ancestral gene.

The polymorphism and structural homology of storage polypeptides (hordein) coded by the Hor-2 locus in barley (Hordeum vulgare L)

Two-dimensional mapping (isoelectric focusing followed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis) of the polypeptide components of "B" hordein fractions from eight barley varieties of widely different ancestry has been carried out. The relative positions of 47 different polypeptides were mapped, there being between 8 and 16 present in any one variety. The individual polypeptides differed in their distribution patterns; some were present in a number of varieties, while others were restricted to one or two. They also differed in their relative contributions to the total hordein fraction, both within and between varieties. The structural homology of the major polypeptides was compared by cleavage at methionine residues with cyanogen bromide and separation of the peptides on gradient gels. The polypeptides were classified into three groups which gave cleavage patterns with either two (class I), four (class II), or five (class III) low molecular weight bands. Class III polypeptides were found in all eight varieties, but in seven of the varieties class I or class II polypeptides were also present. With one exception, polypeptides migrating in the same position in different varieties gave identical or almost identical patterns. The three classes of polypeptides showed different distributions on the two-dimensional gels. Classes II and III polypeptides had a similar range of isoelectric points (pH 6.5-8.0), but all of the class II polypeptides were of slightly lower molecular weight. Class I polypeptides had a wider range of pI and molecular weight; the most alkaline and the lowest molecular weight polypeptides were in this group. The hordein fractions from a number of other barley varieties were compared with that of Julia. All had major polypeptides which migrated with ones present in Julia, but they differed in the relative amounts of these and in the absence of some polypeptides and the presence of others. B hordein is coded for by a single locus which has been suggested to be a complex multigenic family derived by duplication and divergence of a single gene. The data reported here provide support for this hypothesis and suggest that both mutations in the duplicated genes and recombination within the locus may have contributed to the polymorphism of the polypeptides.