Nitrogenase activity and dark CO2 fixation in the lichen Peltigera aphthosa Willd

Perturbations and 3R in carbon management

Perturbations in various carbon pools like biological, geological, oceanic, and missing carbon sink affect its global data, which are generally neglected or ignored in routine calculations. These natural and anthropogenic events need to be considered before projecting a sustainable carbon management plan. These plans have both general and experimental aspects. General plans should focus on (a) minimizing emission; (b) maximizing environmentally sound reuse, reduce, and recycling; (c) effective treatment; and (d) converting carbon into valuable products with atom economy. Experimental carbon management plans involving various biological and chemical techniques with limitation in terms of research level and economic feasibility. Chemical options have benefits of higher productivity and wider product range, but it suffers from its higher-energy requirements and environmental unfriendliness. In contrast to this, biological options are more selective and less energy intensive, but their productivity is very low. Hence, there is a requirement of hybrid process where the benefits of both the options, i.e., biological and chemical, can be reaped. In view of above, the proposed review targets to highlight the various perturbations in the global carbon cycle and their effects; study the currently practiced options of carbon management, specifically in light of 3R principle; and propose various new hybrid methods by compatible combinations of chemical and biological processes to develop better and safer carbon management. These methods are hypothetical so they may require further research and validations but may provide a comprehensive base for developing such management methods.

Bacterial mycophagy: definition and diagnosis of a unique bacterial-fungal interaction

This review analyses the phenomenon of bacterial mycophagy, which we define as a set of phenotypic behaviours that enable bacteria to obtain nutrients from living fungi and thus allow the conversion of fungal into bacterial biomass. We recognize three types of bacterial strategies to derive nutrition from fungi: necrotrophy, extracellular biotrophy and endocellular biotrophy. Each is characterized by a set of uniquely sequential and differently overlapping interactions with the fungal target. We offer a detailed analysis of the nature of these interactions, as well as a comprehensive overview of methodologies for assessing and quantifying their individual contributions to the mycophagy phenotype. Furthermore, we discuss future prospects for the study and exploitation of bacterial mycophagy, including the need for appropriate tools to detect bacterial mycophagy in situ in order to be able to understand, predict and possibly manipulate the way in which mycophagous bacteria affect fungal activity, turnover, and community structure in soils and other ecosystems.

Diazotrophic community structure and function in two successional stages of biological soil crusts from the Colorado Plateau and Chihuahuan Desert

The objective of this study was to characterize the community structure and activity of N2-fixing microorganisms in mature and poorly developed biological soil crusts from both the Colorado Plateau and Chihuahuan Desert. Nitrogenase activity was approximately 10 and 2.5 times higher in mature crusts than in poorly developed crusts at the Colorado Plateau site and Chihuahuan Desert site, respectively. Analysis of nifH sequences by clone sequencing and the terminal restriction fragment length polymorphism technique indicated that the crust diazotrophic community was 80 to 90% heterocystous cyanobacteria most closely related to Nostoc spp. and that the composition of N2-fixing species did not vary significantly between the poorly developed and mature crusts at either site. In contrast, the abundance of nifH sequences was approximately 7.5 times greater (per microgram of total DNA) in mature crusts than in poorly developed crusts at a given site as measured by quantitative PCR. 16S rRNA gene clone sequencing and microscopic analysis of the cyanobacterial community within both crust types demonstrated a transition from a Microcoleus vaginatus-dominated, poorly developed crust to mature crusts harboring a greater percentage of Nostoc and Scytonema spp. We hypothesize that ecological factors, such as soil instability and water stress, may constrain the growth of N2-fixing microorganisms at our study sites and that the transition to a mature, nitrogen-producing crust initially requires bioengineering of the surface microenvironment by Microcoleus vaginatus.

The use of urea by Evernia prunastri thalli

Thalli of Evernia prunastri floated on 40 mM urea synthesize urease (EC3.5.1.5) which is, in part, retained in the cells as well as secreted into the external medium. By using [(14)C]urea, it has been shown that the (14)CO2 evolved by the action of urease is mainly incorporated into phenolic compounds. Evernic acid has the highest radioactivity when incubations are carried out in the light. The orsellinate moiety of this molecule contains ten times more radioactivity than the everninic acid moiety. This could be explained by the assumption that orsellinic acid is the first product of cyclisation of the polyketide chain in the biosynthetic pathway.

Cyanobacteria-eukaryotic plant symbioses

N2-fixing heterocystous cyanobacteria develop in symbiotic association with a small number of eukaryotic plant species belonging to the algae, fungi, liverworts, ferns, gymnosperms and angiosperm. When the free-living cyanobacteria develop in symbiosis, they become modified morphologically, physiologically and biochemically. The symbiosis are relatively specific, and among the changes which occur in the endophytic cyanobacteria are increases in the size of the vegetative cells, changes in the ultrastructure of the vegetative cells, a tendency for a reduction in the filamentous habit, an increased heterocyst frequency when another photosynthetic partner is present, reduced activities of glutamine synthetase and glutamate synthase, and NH4+ release by; the endophytic cyanobacteria. These and other aspects are considered, emphasizing, in particular, work carried out in the authors' laboratory.

(15)N 2 Incorporation and metabolism in the lichen Peltigera aphthosa Willd

The Nostoc in the cephalodia of the lichen Peltigera aphthosa Willd. fixed (15)N2 and the bulk of the nitrogen fixed was continuously transferred from it to its eukaryotic partners (a fungus and a green alga, Coccomyxa sp.). Kinetic studies carried out over the first 30 min, after exposure of isolated cephalodia to (15)N2, showed that highest initial (15)N2-labelling was into NH 4 (+) . After 12 min little further increase in the NH 4 (+) label occurred while that in the amide group of glutamine and in glutamate continued to increase. The (15)N-labelling of the amino group of glutamine and of aspartate increased more slowly, followed by an increase in the labelling of alanine. When total incorporation of (15)N-label was calculated, the overall pattern was found to be rather similar except that, throughout the experiment, the total (15)N incorporated into glutamate was about six times greater than that into the amide group of glutamine. Pulse chase experiments, in which (14)N2 was added to cephalodia previously exposed to (15)N2, showed that the NH 4 (+) pool rapidly became depleted of (15)N-label, followed by decreases in the labelling of glutamate, the amide group of glutamine and aspartate. The (15)N-labelling of alanine, however, continued to increase for a period. When isolated cephalodia were treated with L-methionine-SR-sulphoximine, an inhibitor of glutamine synthetase (EC 6.3.1.2), and azaserine, an inhibitor of glutamate synthase (EC 2.6.1.53), there was no detectable labelling in glutamine although the (15)N-labelling of glutamate increased unimpaired. On treating the cephalodia with amino-oxyacetate, an inhibitor of aminotransferase activity, the alanine pool decreased. Evidence was obtained that glutamine synthetase and glutamate synthase were located in the Nostoc, and that glutamate dehydrogenase (EC 1.4.1.4) and various amino-transferases were located in the cephalodial fungus. Possible implications of these findings are discussed.