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Maw ZA, Grunwald AL, Haltli BA, Cartmell C, Kerr RG. Discovery of the Lipopeptides Albubactins A-H from Streptomyces albidoflavus RKJM0023 via Chemical Elicitation with Rhamnolipids and Synthesis of Albubactin A. JOURNAL OF NATURAL PRODUCTS 2024; 87:1682-1693. [PMID: 38940698 DOI: 10.1021/acs.jnatprod.3c01234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/29/2024]
Abstract
The marine tunicate-derived Streptomyces albidoflavus RKJM0023 was cultured in the presence of a rhamnolipid mixture in an effort to elicit the production of silent natural products. MS/MS-based molecular networking analysis enhanced with nonparametric statistics highlighted the upregulation of a molecular cluster (Kruskal-Wallis p = 1.6 e-6 for 1) in which no MS/MS features had library matches. Targeted isolation of these features resulted in the discovery of nine new N-acylated lipopeptides, albubactins A-H (1-8) each containing a unique glutamine tripeptide and a C-terminal ethyl ester moiety. Three related albubactin acids A-C (9-11) lacking the ethyl ester were also identified. NMR spectroscopy and UPLC-HR-ESI-MS/MS demonstrated that the albubactins were obtained as mixtures that shared a common m/z and differed only in their acylated terminal groups. Due to the complex spectroscopic elucidation with many overlapping shifts, a total synthesis of albubactin A (1) was completed and used to determine the absolute configuration of the new albubactins.
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Affiliation(s)
- Zacharie A Maw
- Department of Biomedical Sciences, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PEI C1A 4P3, Canada
| | - Alyssa L Grunwald
- Nautilus Biosciences, Croda Canada, Charlottetown, PEI C1A 4P3, Canada
| | - Bradley A Haltli
- Department of Biomedical Sciences, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PEI C1A 4P3, Canada
- Nautilus Biosciences, Croda Canada, Charlottetown, PEI C1A 4P3, Canada
| | - Christopher Cartmell
- Department of Pharmacology, College of Medicine; Comprehensive Center for Pain and Addiction, University of Arizona, Tucson, AZ 85724, United States
| | - Russell G Kerr
- Department of Biomedical Sciences, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PEI C1A 4P3, Canada
- Department of Chemistry, Faculty of Science, University of Prince Edward Island, Charlottetown, PEI C1A 4P3, Canada
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A computational approach to model gliding motion of an organism on a sticky slime layer over a solid substrate. Biomech Model Mechanobiol 2022; 21:1441-1455. [PMID: 35788837 DOI: 10.1007/s10237-022-01600-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Accepted: 06/12/2022] [Indexed: 11/02/2022]
Abstract
Bacteria are microscopic single-celled microbes that can only be spotted via a microscope. They occur in a variety of shapes and sizes, and their dimensions are measured in micrometers (one-millionth of a meter). Bacterial categorization is based on a variety of features such as morphology, DNA sequencing, presence of flagella, cell structure, staining techniques, oxygen, and carbon-dioxide requirements. Due to these classifications, gliding bacteria are a miscellaneous class of rodlike microorganisms that cling and propel over ooze slime connected with a substrate. Without the assistance of flagella, which are essential parts of bacterial motility, the organism movement is adopted by waves streaming down the outer layer of this microorganism. To simulate the locomotion of such gliding microorganisms, a wavy sheet over Oldroyd-4 constant fluid is utilized. Under the long wavelength assumption, the equations regulating the flow of slime (modeled as Oldroyd-4 constant slime) beneath the cell/organism are developed. The quantities such as slime flow rate, cell speed, and propulsion power are computed by using bvp4c (MATLAB routine) integrated with the modified Newton-Rasphson technique. Furthermore, the flow patterns and velocity of the slime are graphically shown and thoroughly described using precise (calculated) values of the cell speed and velocity of the slime.
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Doan VS, Saingam P, Yan T, Shin S. A Trace Amount of Surfactants Enables Diffusiophoretic Swimming of Bacteria. ACS NANO 2020; 14:14219-14227. [PMID: 33000940 DOI: 10.1021/acsnano.0c07502] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
From birth to health, surfactants play an essential role in our lives. Due to the importance, their environmental impacts are well understood. One of the aspects that has been extensively studied is their impact on bacteria, particularly on their motility. Here, we uncover an alternate chemotactic strategy triggered by surfactants-diffusiophoresis. We show that even a trace amount of ionic surfactants, down to a single ppm level, can promote the bacterial diffusiophoresis by boosting the surface charge of the cells. Because diffusiophoresis is driven by the surface-solute interactions, surfactant-enhanced diffusiophoresis is observed regardless of the types of bacteria. Whether Gram-positive or -negative, flagellated or nonflagellated, the surfactants enable fast migration of freely suspended bacteria, suggesting a ubiquitous locomotion mechanism that has been largely overlooked. We also demonstrate the implication of surfactant-enhanced bacterial diffusiophoresis on the rapid formation of biofilms in flow networks, suggesting environmental and biomedical implications.
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Affiliation(s)
- Viet Sang Doan
- Department of Mechanical Engineering, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - Prakit Saingam
- Department of Civil and Environmental Engineering, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - Tao Yan
- Department of Civil and Environmental Engineering, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - Sangwoo Shin
- Department of Mechanical Engineering, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
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Abstract
Twitching motility is a form of bacterial translocation over solid or semi-solid surfaces mediated by the extension, tethering, and subsequent retraction of type IV pili. These pili are also known to be involved in virulence, biofilm formation, formation of fruiting bodies, horizontal gene transfer, and protein secretion. We have characterized the presence of twitching motility on agar plates in Legionella pneumophila, the etiological agent of Legionnaires' disease. By examining twitching motility zones, we have demonstrated that twitching motility was dependent on agar thickness/concentration, the chemical composition of the media, the presence of charcoal and cysteine, proximity to other bacteria, and temperature. A knockout mutant of the pilus subunit, pilE, exhibited a total loss of twitching motility at 37 degrees C, but not at 27 degrees C, suggesting either the existence of a compensating pilus subunit or of another twitching motility system in this organism.
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Affiliation(s)
- David A Coil
- Laboratory of Bacteriology, Rega Institute for Medical Research, Katholieke Universiteit Leuven, Leuven, Belgium
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Galvani CD, Li Y, Burr TJ, Hoch HC. Twitching motility among pathogenic Xylella fastidiosa isolates and the influence of bovine serum albumin on twitching-dependent colony fringe morphology. FEMS Microbiol Lett 2007; 268:202-8. [PMID: 17328746 DOI: 10.1111/j.1574-6968.2006.00601.x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
Abstract
Fourteen Xylella fastidiosa isolates from grapevines exhibiting Pierce's disease symptoms in California, Texas, and South Carolina were examined for type IV pilus-mediated twitching motility, a phenotype previously observed in a Temecula isolate from California. All isolates except one from South Carolina (SC 19A97) exhibited colonies with a peripheral fringe on PW agar, a feature indicative of twitching motility; however, when individual cells of SC 19A97 were examined at higher magnifications twitching motility was observed. The presence and width of colony peripheral fringes were related to the amount of bovine serum albumin (BSA) present in the medium; no or low levels of BSA (0-1.8 g L(-1)) permitted development of the widest fringe, whereas higher levels (3.5-6.0 g L(-1)) severely limited, and in many instances prevented, peripheral fringe development. The growth rate of the wild-type Temecula isolate in PW broth with different concentrations of BSA was similar for all tested concentrations of BSA; however, growth was significantly reduced in medium without BSA.
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Affiliation(s)
- Cheryl D Galvani
- Department of Plant Pathology, Cornell University-New York State Agricultural Experiment Station, Geneva, NY 14456, USA
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Galvani CD, Li Y, Burr TJ, Hoch HC. Twitching motility among pathogenic Xylella fastidiosa isolates and the influence of bovine serum albumin on twitching-dependent colony fringe morphology. FEMS Microbiol Lett 2007. [DOI: 10.1111/j.1574-6968.2007.00601.x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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Abstract
Gliding motility is observed in a large variety of phylogenetically unrelated bacteria. Gliding provides a means for microbes to travel in environments with a low water content, such as might be found in biofilms, microbial mats, and soil. Gliding is defined as the movement of a cell on a surface in the direction of the long axis of the cell. Because this definition is operational and not mechanistic, the underlying molecular motor(s) may be quite different in diverse microbes. In fact, studies on the gliding bacterium Myxococcus xanthus suggest that two independent gliding machineries, encoded by two multigene systems, operate in this microorganism. One machinery, which allows individual cells to glide on a surface, independent of whether the cells are moving alone or in groups, requires the function of the genes of the A-motility system. More than 37 A-motility genes are known to be required for this form of movement. Depending on an additional phenotype, these genes are divided into two subclasses, the agl and cgl genes. Videomicroscopic studies on gliding movement, as well as ultrastructural observations of two myxobacteria, suggest that the A-system motor may consist of multiple single motor elements that are arrayed along the entire cell body. Each motor element is proposed to be localized to the periplasmic space and to be anchored to the peptidoglycan layer. The force to glide which may be generated here is coupled to adhesion sites that move freely in the outer membrane. These adhesion sites provide a specific contact with the substratum. Based on single-cell observations, similar models have been proposed to operate in the unrelated gliding bacteria Flavobacterium johnsoniae (formerly Cytophaga johnsonae), Cytophaga strain U67, and Flexibacter polymorphus (a filamentous glider). Although this model has not been verified experimentally, M. xanthus seems to be the ideal organism with which to test it, given the genetic tools available. The second gliding motor in M. xanthus controls cell movement in groups (S-motility system). It is dependent on functional type IV pili and is operative only when cells are in close proximity to each other. Type IV pili are known to be involved in another mode of bacterial surface translocation, called twitching motility. S-motility may well represent a variation of twitching motility in M. xanthus. However, twitching differs from gliding since it involves cell movements that are jerky and abrupt and that lack the organization and smoothness observed in gliding. Components of this motor are encoded by genes of the S-system, which appear to be homologs of genes involved in the biosynthesis, assembly, and function of type IV pili in Pseudomonas aeruginosa and Neisseria gonorrhoeae. How type IV pili generate force in S-motility is currently unknown, but it is to be expected that ongoing physiological, genetic, and biochemical studies in M. xanthus, in conjunction with studies on twitching in P. aeruginosa and N. gonorrhoeae, will provide important insights into this microbial motor. The two motility systems of M. xanthus are affected to different degrees by the MglA protein, which shows similarity to a small GTPase. Bacterial chemotaxis-like sensory transduction systems control gliding motility in M. xanthus. The frz genes appear to regulate gliding movement of individual cells and movement by the S-motility system, suggesting that the two motors found in this bacterium can be regulated to result in coordinated multicellular movements. In contrast, the dif genes affect only S-system-dependent swarming.
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Affiliation(s)
- A M Spormann
- Departments of Civil and Environmental Engineering and of Biological Sciences, Stanford University, Stanford, California 94305, USA.
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Burchard RP, Bloodgood RA. Surface proteins of the gliding bacterium Cytophaga sp. strain U67 and its mutants defective in adhesion and motility. J Bacteriol 1990; 172:3379-87. [PMID: 2345151 PMCID: PMC209149 DOI: 10.1128/jb.172.6.3379-3387.1990] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
Surface proteins of the gliding bacterium Cytophaga sp. strain U67 that make contact with glass substrata were radioiodinated, using a substratum-immobilized catalyst (Iodo-Gen). At least 15 polypeptides were iodinated, fewer than the number labeled by surface biotinylation of whole cells; these polypeptides define the set of possible candidates for the surface protein(s) that mediates gliding-associated substratum adhesion. The labeling of three adhesion-defective mutants exhibited two characteristic patterns of surface iodination which involved addition, loss, or alteration of several polypeptides of high molecular weight. An adhesion-competent revertant of mutant Adh3 and one of Adh2 exhibited the wild-type labeling pattern. Two other Adh2 revertants resembled their adhesion-defective parent. The labeling pattern of surface polypeptides of a nongliding but adhesive cell strain was similar to that of the wild type.
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Affiliation(s)
- R P Burchard
- Department of Biological Sciences, University of Maryland Baltimore County 21228
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Abstract
In this work, we present a density-dependent diffusional model which, coupled to three different types of growth, permitted us to study the infective potential of a bacteria species. The results show that those species with strong internal competency have the higher colonizing capacity in terms of invasion speed. Here, we also advanced a model for the static spatial inhomogeneous distribution that some species establish after migration. It is proposed that the origin of these patterns is the result of a balance between the dispersal tendency and the attractive behavior. The results obtained were compared with the observed behavior of Rhizobium spp. during infection of leguminous roots. A possible explanation of the observed morphologies of nodule development in different legumes is suggested.
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Affiliation(s)
- F Lara-Ochoa
- Centro de Investigación Sobre Fijación de Nitrógeno, UNAM, Cuernavaca, Morelos, México
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