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Ohta T, Matsuura K, Yoshizawa K, Morishima I. The electronic and vibrational structures of iron-oxo porphyrin with a methoxide or cysteinate axial ligand. J Inorg Biochem 2000; 82:141-52. [PMID: 11132621 DOI: 10.1016/s0162-0134(00)00162-8] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Hybrid density functional theory (DFT) calculations for the electronic and vibrational structures of compound I species with a methoxide (MeO-) (1) or cysteinate (CysS-) (2) axial ligand are carried out in order to elucidate the natures of a methoxide-coordinating new type of compound I species (Bull. Chem. Soc. Jpn. 71 (1998) 1343) and cysteinate-coordinating compound I species of chloroperoxidase (CPO-I) and cytochrome P450s (P450-I). DFT computations of 1 and 2 demonstrate that these "anionic" ligands are a spin carrier; 70% (80%) of a spin density resides on the O (S) atom of the axial ligand and 30% (20%) is distributed on the porphyrin ring. These results suggest that for the generation of the compound I species, one electron is removed from the iron centers and the rest of the one electron is supplied from the oxidizable axial ligands instead of the iron centers or the porphyrin ring. Vibrational analyses demonstrate that the Fe=O bond is more strongly activated in 1 compared with 2 with the stretching mode at 849 cm(-1) (878 cm(-1)) for the doublet state1a (2a) and at 814 cm(-1) (875 cm(-1)) in the quartet state 1b (2b). This reverse order of the Fe=O bond strength with respect to the axial donor strength should have relevance to the significantly oxidized character of the CysS- axial ligand. In conjunction with the recent results of the extensive resonance Raman (RR) studies, some interpretations of unsettled RR results for compound I of chloroperoxidase (CPO-I) and a synthetic compound I species [O=FeIV(TMP*+)(alcohol)] (J. Am. Chem. Soc. 113 (1991) 6542) concerning the O=Fe stretching frequencies are discussed.
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Affiliation(s)
- T Ohta
- Department of Molecular Engineering, Kyoto University, Japan
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Affiliation(s)
- Angel C. de Dios
- Department of Chemistry, Georgetown University, 37th and O Streets, NW Washington, D.C. 20057
| | - Jennifer L. Roach
- Department of Chemistry, Georgetown University, 37th and O Streets, NW Washington, D.C. 20057
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Salzmann R, McMahon MT, Godbout N, Sanders LK, Wojdelski M, Oldfield E. Solid-State NMR, Crystallographic and Density Functional Theory Investigation of Fe−CO and Fe−CO Analogue Metalloporphyrins and Metalloproteins. J Am Chem Soc 1999. [DOI: 10.1021/ja9832818] [Citation(s) in RCA: 50] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Renzo Salzmann
- Contribution from the Departments of Chemistry and Biophysics, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
| | - Michael T. McMahon
- Contribution from the Departments of Chemistry and Biophysics, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
| | - Nathalie Godbout
- Contribution from the Departments of Chemistry and Biophysics, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
| | - Lori K. Sanders
- Contribution from the Departments of Chemistry and Biophysics, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
| | - Mark Wojdelski
- Contribution from the Departments of Chemistry and Biophysics, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
| | - Eric Oldfield
- Contribution from the Departments of Chemistry and Biophysics, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
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McMahon MT, deDios AC, Godbout N, Salzmann R, Laws DD, Le H, Havlin RH, Oldfield E. An Experimental and Quantum Chemical Investigation of CO Binding to Heme Proteins and Model Systems: A Unified Model Based on 13C, 17O, and 57Fe Nuclear Magnetic Resonance and 57Fe Mössbauer and Infrared Spectroscopies. J Am Chem Soc 1998. [DOI: 10.1021/ja973272j] [Citation(s) in RCA: 93] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Michael T. McMahon
- Contribution from the Department of Chemistry, University of Illinois at Urbana−Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
| | - Angel C. deDios
- Contribution from the Department of Chemistry, University of Illinois at Urbana−Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
| | - Nathalie Godbout
- Contribution from the Department of Chemistry, University of Illinois at Urbana−Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
| | - Renzo Salzmann
- Contribution from the Department of Chemistry, University of Illinois at Urbana−Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
| | - David D. Laws
- Contribution from the Department of Chemistry, University of Illinois at Urbana−Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
| | - Hongbiao Le
- Contribution from the Department of Chemistry, University of Illinois at Urbana−Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
| | - Robert H. Havlin
- Contribution from the Department of Chemistry, University of Illinois at Urbana−Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
| | - Eric Oldfield
- Contribution from the Department of Chemistry, University of Illinois at Urbana−Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
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Havlin RH, Godbout N, Salzmann R, Wojdelski M, Arnold W, Schulz CE, Oldfield E. An Experimental and Density Functional Theoretical Investigation of Iron-57 Mössbauer Quadrupole Splittings in Organometallic and Heme-Model Compounds: Applications to Carbonmonoxy-Heme Protein Structure. J Am Chem Soc 1998. [DOI: 10.1021/ja972619f] [Citation(s) in RCA: 77] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Robert H. Havlin
- Contribution from the Department of Chemistry, University of Illinois at UrbanaChampaign, 600 South Mathews Avenue, Urbana, Illinois 61801, and Department of Physics, Knox College, 2 East South Street, Galesburg, Illinois 61401
| | - Nathalie Godbout
- Contribution from the Department of Chemistry, University of Illinois at UrbanaChampaign, 600 South Mathews Avenue, Urbana, Illinois 61801, and Department of Physics, Knox College, 2 East South Street, Galesburg, Illinois 61401
| | - Renzo Salzmann
- Contribution from the Department of Chemistry, University of Illinois at UrbanaChampaign, 600 South Mathews Avenue, Urbana, Illinois 61801, and Department of Physics, Knox College, 2 East South Street, Galesburg, Illinois 61401
| | - Mark Wojdelski
- Contribution from the Department of Chemistry, University of Illinois at UrbanaChampaign, 600 South Mathews Avenue, Urbana, Illinois 61801, and Department of Physics, Knox College, 2 East South Street, Galesburg, Illinois 61401
| | - William Arnold
- Contribution from the Department of Chemistry, University of Illinois at UrbanaChampaign, 600 South Mathews Avenue, Urbana, Illinois 61801, and Department of Physics, Knox College, 2 East South Street, Galesburg, Illinois 61401
| | - Charles E. Schulz
- Contribution from the Department of Chemistry, University of Illinois at UrbanaChampaign, 600 South Mathews Avenue, Urbana, Illinois 61801, and Department of Physics, Knox College, 2 East South Street, Galesburg, Illinois 61401
| | - Eric Oldfield
- Contribution from the Department of Chemistry, University of Illinois at UrbanaChampaign, 600 South Mathews Avenue, Urbana, Illinois 61801, and Department of Physics, Knox College, 2 East South Street, Galesburg, Illinois 61401
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Salzmann R, Wojdelski M, McMahon M, Havlin RH, Oldfield E. A Solid-State Nitrogen-15 Nuclear Magnetic Resonance Spectroscopic and Quantum Chemical Investigation of Nitrosoarene−Metal Interactions in Model Systems and in Heme Proteins. J Am Chem Soc 1998. [DOI: 10.1021/ja971587t] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Renzo Salzmann
- Contribution from the Department of Chemistry, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
| | - Mark Wojdelski
- Contribution from the Department of Chemistry, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
| | - Michael McMahon
- Contribution from the Department of Chemistry, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
| | - Robert H. Havlin
- Contribution from the Department of Chemistry, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
| | - Eric Oldfield
- Contribution from the Department of Chemistry, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801
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Kuramochi H, Noodleman L, Case DA. Density Functional Study on the Electronic Structures of Model Peroxidase Compounds I and II. J Am Chem Soc 1997. [DOI: 10.1021/ja970574c] [Citation(s) in RCA: 85] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Hiroshi Kuramochi
- Contribution from the Department of Molecular Biology, TPC15, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037
| | - Louis Noodleman
- Contribution from the Department of Molecular Biology, TPC15, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037
| | - David A. Case
- Contribution from the Department of Molecular Biology, TPC15, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037
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Yamamoto S, Teraoka J, Kashiwagi H. AbinitioRHF and CASSCF studies on Fe–O bond in high‐valent iron‐oxo‐porphyrins. J Chem Phys 1988. [DOI: 10.1063/1.454655] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Quantum chemical interpretation of the dihydrogen formation process in photocatalytic 2-propanol dehydrogenation with rhodium porphyrin complex. ACTA ACUST UNITED AC 1984. [DOI: 10.1016/0304-5102(84)85051-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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10
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Ab Initio Calculations of Metalloporphyrins. ADVANCES IN QUANTUM CHEMISTRY 1982. [DOI: 10.1016/s0065-3276(08)60351-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/07/2023]
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