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Ferreira EA, Lambert S, Verrier T, Marion-Poll F, Yassin A. Soft Selective Sweep on Chemosensory Genes Correlates with Ancestral Preference for Toxic Noni in a Specialist Drosophila Population. Genes (Basel) 2020; 12:genes12010032. [PMID: 33383708 PMCID: PMC7824377 DOI: 10.3390/genes12010032] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Revised: 12/17/2020] [Accepted: 12/22/2020] [Indexed: 12/14/2022] Open
Abstract
Understanding how organisms adapt to environmental changes is a major question in evolution and ecology. In particular, the role of ancestral variation in rapid adaptation remains unclear because its trace on genetic variation, known as soft selective sweep, is often hardly recognizable from genome-wide selection scans. Here, we investigate the evolution of chemosensory genes in Drosophila yakuba mayottensis, a specialist subspecies on toxic noni (Morinda citrifolia) fruits on the island of Mayotte. We combine population genomics analyses and behavioral assays to evaluate the level of divergence in chemosensory genes and perception of noni chemicals between specialist and generalist subspecies of D. yakuba. We identify a signal of soft selective sweep on a handful of genes, with the most diverging ones involving a cluster of gustatory receptors expressed in bitter-sensing neurons. Our results highlight the potential role of ancestral genetic variation in promoting host plant specialization in herbivorous insects and identify a number of candidate genes underlying behavioral adaptation.
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Affiliation(s)
- Erina A. Ferreira
- Laboratoire Évolution, Génomes, Comportement et Écologie, CNRS, IRD, Université Paris-Saclay, 91198 Gif-sur-Yvette, France; (E.A.F.); (F.M.-P.)
- Institut Systématique Evolution Biodiversité (ISYEB) Centre National de la Recherche Scientifique, MNHN, Sorbonne Université, EPHE 57 rue Cuvier, CP 50, 75005 Paris, France; (S.L.); (T.V.)
| | - Sophia Lambert
- Institut Systématique Evolution Biodiversité (ISYEB) Centre National de la Recherche Scientifique, MNHN, Sorbonne Université, EPHE 57 rue Cuvier, CP 50, 75005 Paris, France; (S.L.); (T.V.)
| | - Thibault Verrier
- Institut Systématique Evolution Biodiversité (ISYEB) Centre National de la Recherche Scientifique, MNHN, Sorbonne Université, EPHE 57 rue Cuvier, CP 50, 75005 Paris, France; (S.L.); (T.V.)
| | - Frédéric Marion-Poll
- Laboratoire Évolution, Génomes, Comportement et Écologie, CNRS, IRD, Université Paris-Saclay, 91198 Gif-sur-Yvette, France; (E.A.F.); (F.M.-P.)
- AgroParisTech, Université Paris-Saclay, 75231 Paris, France
| | - Amir Yassin
- Laboratoire Évolution, Génomes, Comportement et Écologie, CNRS, IRD, Université Paris-Saclay, 91198 Gif-sur-Yvette, France; (E.A.F.); (F.M.-P.)
- Institut Systématique Evolution Biodiversité (ISYEB) Centre National de la Recherche Scientifique, MNHN, Sorbonne Université, EPHE 57 rue Cuvier, CP 50, 75005 Paris, France; (S.L.); (T.V.)
- Correspondence:
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Andrade López JM, Lanno SM, Auerbach JM, Moskowitz EC, Sligar LA, Wittkopp PJ, Coolon JD. Genetic basis of octanoic acid resistance in Drosophila sechellia: functional analysis of a fine-mapped region. Mol Ecol 2017; 26:1148-1160. [PMID: 28035709 PMCID: PMC5330365 DOI: 10.1111/mec.14001] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2015] [Revised: 12/14/2016] [Accepted: 12/15/2016] [Indexed: 12/27/2022]
Abstract
Drosophila sechellia is a species of fruit fly endemic to the Seychelles islands. Unlike its generalist sister species, D. sechellia has evolved to be a specialist on the host plant Morinda citrifolia. This specialization is interesting because the plant's fruit contains secondary defence compounds, primarily octanoic acid (OA), that are lethal to most other Drosophilids. Although ecological and behavioural adaptations to this toxic fruit are known, the genetic basis for evolutionary changes in OA resistance is not. Prior work showed that a genomic region on chromosome 3R containing 18 genes has the greatest contribution to differences in OA resistance between D. sechellia and D. simulans. To determine which gene(s) in this region might be involved in the evolutionary change in OA resistance, we knocked down expression of each gene in this region in D. melanogaster with RNA interference (RNAi) (i) ubiquitously throughout development, (ii) during only the adult stage and (iii) within specific tissues. We identified three neighbouring genes in the Osiris family, Osiris 6 (Osi6), Osi7 and Osi8, that led to decreased OA resistance when ubiquitously knocked down. Tissue-specific RNAi, however, showed that decreasing expression of Osi6 and Osi7 specifically in the fat body and/or salivary glands increased OA resistance. Gene expression analyses of Osi6 and Osi7 revealed that while standing levels of expression are higher in D. sechellia, Osi6 expression is significantly downregulated in salivary glands in response to OA exposure, suggesting that evolved tissue-specific environmental plasticity of Osi6 expression may be responsible for OA resistance in D. sechellia.
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Affiliation(s)
- J. M. Andrade López
- Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor MI 48109
| | - S. M. Lanno
- Department of Biology, Wesleyan University, Middletown CT 06459
| | - J. M. Auerbach
- Department of Biology, Wesleyan University, Middletown CT 06459
| | - E. C. Moskowitz
- Department of Biology, Wesleyan University, Middletown CT 06459
| | - L. A. Sligar
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor MI 48109
| | - P. J. Wittkopp
- Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor MI 48109
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor MI 48109
| | - J. D. Coolon
- Department of Biology, Wesleyan University, Middletown CT 06459
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor MI 48109
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Tissue-specific activation of a single gustatory receptor produces opposing behavioral responses in Drosophila. Genetics 2012; 192:521-32. [PMID: 22798487 PMCID: PMC3454881 DOI: 10.1534/genetics.112.142455] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Understanding sensory systems that perceive environmental inputs and neural circuits that select appropriate motor outputs is essential for studying how organisms modulate behavior and make decisions necessary for survival. Drosophila melanogaster oviposition is one such important behavior, in which females evaluate their environment and choose to lay eggs on substrates they may find aversive in other contexts. We employed neurogenetic techniques to characterize neurons that influence the choice between repulsive positional and attractive egg-laying responses toward the bitter-tasting compound lobeline. Surprisingly, we found that neurons expressing Gr66a, a gustatory receptor normally involved in avoidance behaviors, receive input for both attractive and aversive preferences. We hypothesized that these opposing responses may result from activation of distinct Gr66a-expressing neurons. Using tissue-specific rescue experiments, we found that Gr66a-expressing neurons on the legs mediate positional aversion. In contrast, pharyngeal taste cells mediate the egg-laying attraction to lobeline, as determined by analysis of mosaic flies in which subsets of Gr66a neurons were silenced. Finally, inactivating mushroom body neurons disrupted both aversive and attractive responses, suggesting that this brain structure is a candidate integration center for decision-making during Drosophila oviposition. We thus define sensory and central neurons critical to the process by which flies decide where to lay an egg. Furthermore, our findings provide insights into the complex nature of gustatory perception in Drosophila. We show that tissue-specific activation of bitter-sensing Gr66a neurons provides one mechanism by which the gustatory system differentially encodes aversive and attractive responses, allowing the female fly to modulate her behavior in a context-dependent manner.
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Lott SE, Ludwig MZ, Kreitman M. Evolution and inheritance of early embryonic patterning in Drosophila simulans and D. sechellia. Evolution 2011; 65:1388-99. [PMID: 21121913 PMCID: PMC3083464 DOI: 10.1111/j.1558-5646.2010.01206.x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Pattern formation in Drosophila is a widely studied example of a robust developmental system. Such robust systems pose a challenge to adaptive evolution, as they mask variation that selection may otherwise act upon. Yet we find variation in the localization of expression domains (henceforth "stripe allometry") in the pattern formation pathway. Specifically, we characterize differences in the gap genes giant and Kruppel, and the pair-rule gene even-skipped, which differ between the sibling species Drosophila simulans and D. sechellia. In a double-backcross experiment, stripe allometry is consistent with maternal inheritance of stripe positioning and multiple genetic factors, with a distinct genetic basis from embryo length. Embryos produced by F1 and F2 backcross mothers exhibit novel spatial patterns of gene expression relative to the parental species, with no measurable increase in positional variance among individuals. Buffering of novel spatial patterns in the backcross genotypes suggests that robustness need not be disrupted in order for the trait to evolve, and perhaps the system is incapable of evolving to prevent the expression of all genetic variation. This limitation, and the ability of natural selection to act on minute genetic differences that are within the "margin of error" for the buffering mechanism, indicates that developmentally buffered traits can evolve without disruption of robustness.
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Affiliation(s)
- Susan E Lott
- Committee on Genetics and Department of Ecology and Evolution, University of Chicago, 1101 E 57th St., Chicago, Illinois 60637, USA.
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Oviposition preference for and positional avoidance of acetic acid provide a model for competing behavioral drives in Drosophila. Proc Natl Acad Sci U S A 2009; 106:11352-7. [PMID: 19541615 DOI: 10.1073/pnas.0901419106] [Citation(s) in RCA: 141] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Selection of appropriate oviposition sites is essential for progeny survival and fitness in generalist insect species, such as Drosophila melanogaster, yet little is known about the mechanisms regulating how environmental conditions and innate adult preferences are evaluated and balanced to yield the final substrate choice for egg-deposition. Female D. melanogaster are attracted to food containing acetic acid (AA) as an oviposition substrate. However, our observations reveal that this egg-laying preference is a complex process, as it directly opposes an otherwise strong, default behavior of positional avoidance for the same food. We show that 2 distinct sensory modalities detect AA. Attraction to AA-containing food for the purpose of egg-laying relies on the gustatory system, while positional repulsion depends primarily on the olfactory system. Similarly, distinct central brain regions are involved in AA attraction and repulsion. Given this unique situation, in which a single environmental stimulus yields 2 opposing behavioral outputs, we propose that the interaction of egg-laying attraction and positional aversion for AA provides a powerful model for studying how organisms balance competing behavioral drives and integrate signals involved in choice-like processes.
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Abstract
Interactions between herbivorous insects and their host plants are rich in diversity. How such interactions evolved has been a central issue in ecology. A series of analyses on an example of host-plant adaptation in a Drosophila species suggest that neurogenetics can be a powerful tool for understanding how insects' ability to select a specific host plant has evolved. Drosophila sechellia is a specialist species that exclusively reproduces on the ripe fruit of Morinda citrifolia, which is toxic to other Drosophila species, including D. melanogaster and D. simulans, which are phylogenetically close to D. sechellia. Genetic analyses have revealed that multiple loci are involved in the physiological and behavioral adaptations of D. sechellia to the Morinda fruit. The behavioral adaptation includes the loss of avoidance of the host toxin and the enhanced sensitivity to the host odor. Two odorant-binding protein genes, Obp57d and Obp57e, are involved in the perception of the host toxin. D. sechellia has lost several putative bitter-taste receptor genes, which might also be involved in the loss of avoidance of the host toxin. The available genetic data support an evolutionary scenario, in which the shift in the host-plant selection was not achieved by the acquisition of novel abilities, but by the loss of already existing abilities. It is also suggested that the size of chemosensory gene families has a potential to be an index of complexity in insect-environment interaction, providing an opportunity to reexamine the longstanding "specialization as an evolutionary dead end" hypothesis.
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Affiliation(s)
- Takashi Matsuo
- Department of Biological Sciences, Tokyo Metropolitan University, Hachioji, Tokyo, Japan.
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Markow TA, Beall S, Matzkin LM. Egg size, embryonic development time and ovoviviparity in Drosophila species. J Evol Biol 2008; 22:430-4. [PMID: 19032497 DOI: 10.1111/j.1420-9101.2008.01649.x] [Citation(s) in RCA: 97] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Lengths, widths and volumes of eggs from 11 species of Drosophila whose genomes have been fully sequenced exhibit significant variation that is not explained by their phylogenetic relationships. Furthermore, egg size differences are unrelated to embryonic development time in these species. In addition, two of the species, Drosophila sechellia and, to a lesser degree, D. yakuba, both ecological specialists, exhibit ovoviviparity, suggesting that female control over oviposition in these species differs from what is observed in D. melanogaster. The interspecific differences in these reproductive characters, coupled with the availability of whole genome sequences for each, provide an unprecedented opportunity to examine their evolution.
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Affiliation(s)
- T A Markow
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA.
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Bossart JL. Covariance of preference and performance on normal and novel hosts in a locally monophagous and locally polyphagous butterfly population. Oecologia 2003; 135:477-86. [PMID: 12721839 DOI: 10.1007/s00442-003-1211-x] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2002] [Accepted: 02/04/2003] [Indexed: 11/26/2022]
Abstract
Covariance between preference and performance was quantified for Papilio glaucus strains derived from a locally monophagous Florida population and a locally polyphagous Ohio population. I used two-choice assays to assess relative host preferences of mothers for plant species that represent reciprocal normal and novel hosts for each population (i.e., Liriodendron tulipifera and Magnolia virginiana) and a split-brood design to quantify relative performance of their progeny on each host. Covariance between preference and proxies of performance was detected independently within each population, which is a level of genetic structure at which such covariance has rarely been documented. These results support the hypothesis that preference-performance covariance can exist in populations that have no obvious internal host-associated structure. In the Ohio strain, all proxies of performance (larval duration, pupal mass, relative growth rate, and survival) were significantly correlated with relative preference for the normal host, L. tulipifera. In the Florida strain, however, only pupal mass was correlated with maternal preference, and this correlation was not in the direction expected. Progeny that attained the heaviest mass were derived from mothers that preferred L. tulipifera, the locally rare host. The nature of the preference-performance links was not in the manner predicted by conventional optimal oviposition theory, whereby host-associated tradeoffs have been considered an implicit element. Relative performance was congruent across hosts, regardless of whether mothers preferred L. tulipifera, M. virginiana, or neither host. After considering possible genetic and nongenetic explanations that could account for preference-performance covariance in P. glaucus, I conclude that this covariance has a genetic basis. Likely, multiple genetic control mechanisms (e.g., pleiotropy and co-adaptation) integrate at the level of different trait combinations and/or a particular trait combination to generate observed patterns.
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Affiliation(s)
- J L Bossart
- Department of Biology, The College of New Jersey, PO Box 7718, Ewing, NJ 08628-0718, USA.
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Oviposition preference for novel versus normal food resources in laboratory populations ofDrosophila melanogaster. J Biosci 1998. [DOI: 10.1007/bf02703000] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Within- and among-population variation in oviposition preference for urea-supplemented food inDrosophila melanogaster. J Biosci 1997. [DOI: 10.1007/bf02703235] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Oviposition site selection: unresponsiveness ofDrosophilato cues of potential thermal stress. Anim Behav 1997. [DOI: 10.1006/anbe.1996.0333] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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