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Kitchen SA, Naragon TH, Brückner A, Ladinsky MS, Quinodoz SA, Badroos JM, Viliunas JW, Kishi Y, Wagner JM, Miller DR, Yousefelahiyeh M, Antoshechkin IA, Eldredge KT, Pirro S, Guttman M, Davis SR, Aardema ML, Parker J. The genomic and cellular basis of biosynthetic innovation in rove beetles. Cell 2024; 187:3563-3584.e26. [PMID: 38889727 PMCID: PMC11246231 DOI: 10.1016/j.cell.2024.05.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Revised: 02/29/2024] [Accepted: 05/06/2024] [Indexed: 06/20/2024]
Abstract
How evolution at the cellular level potentiates macroevolutionary change is central to understanding biological diversification. The >66,000 rove beetle species (Staphylinidae) form the largest metazoan family. Combining genomic and cell type transcriptomic insights spanning the largest clade, Aleocharinae, we retrace evolution of two cell types comprising a defensive gland-a putative catalyst behind staphylinid megadiversity. We identify molecular evolutionary steps leading to benzoquinone production by one cell type via a mechanism convergent with plant toxin release systems, and synthesis by the second cell type of a solvent that weaponizes the total secretion. This cooperative system has been conserved since the Early Cretaceous as Aleocharinae radiated into tens of thousands of lineages. Reprogramming each cell type yielded biochemical novelties enabling ecological specialization-most dramatically in symbionts that infiltrate social insect colonies via host-manipulating secretions. Our findings uncover cell type evolutionary processes underlying the origin and evolvability of a beetle chemical innovation.
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Affiliation(s)
- Sheila A Kitchen
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Thomas H Naragon
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Adrian Brückner
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Mark S Ladinsky
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Sofia A Quinodoz
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Jean M Badroos
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Joani W Viliunas
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Yuriko Kishi
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Julian M Wagner
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - David R Miller
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Mina Yousefelahiyeh
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Igor A Antoshechkin
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - K Taro Eldredge
- Museum of Zoology, University of Michigan, Ann Arbor, MI 48109, USA
| | - Stacy Pirro
- Iridian Genomes, 613 Quaint Acres Dr., Silver Spring, MD 20904, USA
| | - Mitchell Guttman
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Steven R Davis
- Division of Invertebrate Zoology, American Museum of Natural History, New York, NY 10024, USA
| | - Matthew L Aardema
- Department of Biology, Montclair State University, Montclair, NJ 07043, USA
| | - Joseph Parker
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
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Kitchen SA, Naragon TH, Brückner A, Ladinsky MS, Quinodoz SA, Badroos JM, Viliunas JW, Wagner JM, Miller DR, Yousefelahiyeh M, Antoshechkin IA, Eldredge KT, Pirro S, Guttman M, Davis SR, Aardema ML, Parker J. The genomic and cellular basis of biosynthetic innovation in rove beetles. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.05.29.542378. [PMID: 37398185 PMCID: PMC10312436 DOI: 10.1101/2023.05.29.542378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/04/2023]
Abstract
How evolution at the cellular level potentiates change at the macroevolutionary level is a major question in evolutionary biology. With >66,000 described species, rove beetles (Staphylinidae) comprise the largest metazoan family. Their exceptional radiation has been coupled to pervasive biosynthetic innovation whereby numerous lineages bear defensive glands with diverse chemistries. Here, we combine comparative genomic and single-cell transcriptomic data from across the largest rove beetle clade, Aleocharinae. We retrace the functional evolution of two novel secretory cell types that together comprise the tergal gland-a putative catalyst behind Aleocharinae's megadiversity. We identify key genomic contingencies that were critical to the assembly of each cell type and their organ-level partnership in manufacturing the beetle's defensive secretion. This process hinged on evolving a mechanism for regulated production of noxious benzoquinones that appears convergent with plant toxin release systems, and synthesis of an effective benzoquinone solvent that weaponized the total secretion. We show that this cooperative biosynthetic system arose at the Jurassic-Cretaceous boundary, and that following its establishment, both cell types underwent ∼150 million years of stasis, their chemistry and core molecular architecture maintained almost clade-wide as Aleocharinae radiated globally into tens of thousands of lineages. Despite this deep conservation, we show that the two cell types have acted as substrates for the emergence of adaptive, biochemical novelties-most dramatically in symbiotic lineages that have infiltrated social insect colonies and produce host behavior-manipulating secretions. Our findings uncover genomic and cell type evolutionary processes underlying the origin, functional conservation and evolvability of a chemical innovation in beetles.
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Koçak Y, Yağmur E. New Contribution to the Knowledge on the Chromosome Numbers of Turkish Cerambycidae (Coleoptera). Folia Biol (Praha) 2021. [DOI: 10.3409/fb_69-2.11] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Information on the karyotypes of Turkish species of Cerambycidae is scanty. Our study contributes to the knowledge of the karyological data (chromosomal number and mechanism of sex determination) of five Turkish longicorn beetles; karyotypes of four taxa, one endemic, are described
for the first time and for the remaining one, Purpuricenus budensis (Götz, 1783), the previously published chromosome count is confirmed. The chromosome number of Purpuricenus desfontainii inhumeralis Pic, 1891 and Purpuricenus budensis (Götz, 1783) (Cerambycinae,
Trachyderini) was found to be 2n = 28 (13 + Xyp); Clytus rhamni Germar, 1817 and Plagionotus floralis (Pallas, 1773) (Cerambycinae, Clytini) 2n = 20 (9 + Xyp); and the endemic Dorcadion triste phrygicum Peks, 1993 (Lamiinae, Dorcadionini) 2n = 24
(11 + Xyp). In view of the paucity of data available until now, our study is important for both to improve the poor karyological knowledge of Turkish Cerambycidae and to provide an incentive for other researchers.
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Okutaner AY. First cytogenetic information on four checkered beetles (Coleoptera, Cleridae). COMPARATIVE CYTOGENETICS 2020; 14:541-547. [PMID: 33194094 PMCID: PMC7609493 DOI: 10.3897/compcytogen.v14i4.55358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Accepted: 09/23/2020] [Indexed: 06/11/2023]
Abstract
The karyotypes of four species of Cleridae (Coleoptera): Trichodes favarius (Illiger, 1802), Trichodes quadriguttatus Adams, 1817, Trichodes reichei (Mulsant et Rey, 1863), and Tilloidea transversalis (Charpentier, 1825) were reported for the first time with this study. The chromosome numbers of these four species were determined as 2n = 18, sex chromosome system Xyp, and all chromosomes were metacentric (the except y chromosome). Together with this study, the chromosome data of only 17 species are available in this family. It is remarkable that all of them display the same chromosome number and similar karyotypes. This may make the effect of karyotypical features important in interpreting the evolutionary process of Cleridae.
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Affiliation(s)
- Atılay Yağmur Okutaner
- Kırşehir Ahi Evran University, Department of Anthropology, Kırşehir, TurkeyKırşehir Ahi Evran UniversityKırşehirTurkey
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First report on the chromosomal analysis of three species of tribe Eristalini (Diptera: Syrphidae) from outer Himalayas, India. Biologia (Bratisl) 2019. [DOI: 10.2478/s11756-018-00184-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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First report on karyotypic and morphometric analysis of a defoliator beetle, Zygogramma bicolorata (Coleoptera: Chrysomelidae) from Jammu region (J&K), India. THE NUCLEUS 2017. [DOI: 10.1007/s13237-016-0184-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022] Open
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Karagyan G, Lachowska D, Kalashian M. Karyotype analysis of four jewel-beetle species (Coleoptera, Buprestidae) detected by standard staining, C-banding, AgNOR-banding and CMA3/DAPI staining. COMPARATIVE CYTOGENETICS 2012; 6:183-97. [PMID: 24260661 PMCID: PMC3833796 DOI: 10.3897/compcytogen.v6i2.2950] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2012] [Accepted: 04/17/2012] [Indexed: 05/16/2023]
Abstract
The male karyotypes of Acmaeodera pilosellae persica Mannerheim, 1837 with 2n=20 (18+neoXY), Sphenoptera scovitzii Faldermann, 1835 (2n=38-46), Dicerca aenea validiuscula Semenov, 1895 - 2n=20 (18+Xyp) and Sphaerobothris aghababiani Volkovitsh et Kalashian, 1998 - 2n=16 (14+Xyp) were studied using conventional staining and different chromosome banding techniques: C-banding, AgNOR-banding, as well as fluorochrome Chromomycin A3 (CMA3) and DAPI. It is shown that C-positive segments are weakly visible in all four species which indicates a small amount of constitutive heterochromatin (CH). There were no signals after DAPI staining and some positive signals were discovered using CMA3 staining demonstrating absence of AT-rich DNA and presence of GC-rich clusters of CH. Nucleolus organizing regions (NORs) were revealed using Ag-NOR technique; argentophilic material mostly coincides with positive signals obtained using CMA3 staining.
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Affiliation(s)
- Gayane Karagyan
- Institute of Zoology of Scientific Center of Zoology and Hydroecology, National Academy of Sciences of Armenia, P. Sevak 7, Yerevan 0014, Armenia
| | - Dorota Lachowska
- Department of Entomology, Institute of Zoology Jagiellonian University, Ingardena 6, 30-060 Krakow, Poland
| | - Mark Kalashian
- Institute of Zoology of Scientific Center of Zoology and Hydroecology, National Academy of Sciences of Armenia, P. Sevak 7, Yerevan 0014, Armenia
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Karyology of parthenogenetic weevils (Coleoptera, Curculionidae): Do meiotic prophase stages occur? Micron 2009; 40:881-5. [DOI: 10.1016/j.micron.2009.06.006] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2009] [Revised: 06/10/2009] [Accepted: 06/10/2009] [Indexed: 11/24/2022]
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Lachowska D, Rożek M, Holecová M. New data on the cytology of parthenogenetic weevils (Coleoptera, Curculionidae). Genetica 2007; 134:235-42. [DOI: 10.1007/s10709-007-9230-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2007] [Accepted: 11/12/2007] [Indexed: 11/24/2022]
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Rozek M, Lachowska D, Petitpierre E, Holecova M. C-bands on chromosomes of 32 beetle species (Coleoptera: Elateridae, Cantharidae, Oedemeridae, Cerambycidae, Anthicidae, Chrysomelidae, Attelabidae and Curculionidae). Hereditas 2004; 140:161-70. [PMID: 15198705 DOI: 10.1111/j.1601-5223.2004.01810.x] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Abstract
C-banding patterns of 32 beetle species from the families Elateridae, Cantharidae, Oedemeridae, Cerambycidae, Anthicidae, Chrysomelidae, Attelabidae and Curculionidae were studied using the C-banding technique. Mitotic and meiotic chromosomes were previously described for 14 species. From among 18 species that had never been cytogenetically studied, we determined the diploid and haploid chromosome numbers and the sex determination system for 12 beetles. The karyotype for 6 species is not described because of a lack of mitotic and meiotic metaphases. Results confirm that most of the beetle species possess a small amount of heterochromatin and C-positive segments are weakly visible in pachytene stages and weakly or imperceptible in mitotic and meiotic metaphases. In some species with a large amount of heterochromatin, C-bands were observed in the centromeric region in all autosomes and the X chromosome. The Y chromosome does not show C-bands with the exception of Oedemera viridis in which it possesses a small band of heterochromatin.
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Affiliation(s)
- M Rozek
- Department of Experimental Zoology, Institute of Systematics and Evolution of Animals, Polish Academy of Sciences, Kraków, Poland.
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Machado V, Galián J, De Araújo AM, Valente VL. Cytogenetics of eight Neotropical species of Chauliognathus Henzt, 1830: implications on the ancestral karyotype in Cantharidae (Coleoptera). Hereditas 2002; 134:121-4. [PMID: 11732847 DOI: 10.1111/j.1601-5223.2001.00121.x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
Abstract
Meiotic chromosomes of eight Neotropical species of the genus Chauliognathus occurring in Southern Brazil were analysed from testis cells. The meioformula of all the species was n = 6 + X (with six pairs of autosomes and one X chromosome). This meioformula is also present in C. scriptus plus two other species of other genera of Cantharidae, suggesting an evolutionary tendency towards the compaction of the karyotype starting from the ancestral Polyphagan meioformula n = 9 + Xy(p). The presence of an XO sex chromosome mechanism in all cantharid species studied to date indicates that the reduction of the number of autosomes was probably paralleled by the loss of the small typical Polyphagan yp heterosome. Thus the meioformula n = 6 + X seems to be an apomorphy for Cantharidae and may have evolved soon after the separation of the ancestral cantharid from the other families of Polyphaga.
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Affiliation(s)
- V Machado
- Lab. de Biologia Molecular, Universidade do Vale do Rio dos Sinos--Unisinos, São Leopoldo, Brazil.
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