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Gokhman VE, Kuznetsova VG. Structure and Evolution of Ribosomal Genes of Insect Chromosomes. INSECTS 2024; 15:593. [PMID: 39194798 DOI: 10.3390/insects15080593] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2024] [Revised: 07/25/2024] [Accepted: 08/02/2024] [Indexed: 08/29/2024]
Abstract
Currently, clusters of 45S and 5S ribosomal DNA (rDNA) have been studied in about 1000 and 100 species of the class Insecta, respectively. Although the number of insect species with known 45S rDNA clusters (also referred to as nucleolus-organizing regions, or NORs) constitutes less than 0.1 percent of the described members of this enormous group, certain conclusions can already be drawn. Since haploid karyotypes with single 45S and 5S rDNA clusters predominate in both basal and derived insect groups, this character state is apparently ancestral for the class Insecta in general. Nevertheless, the number, chromosomal location, and other characteristics of both 45S and 5S rDNA sites substantially vary across different species, and sometimes even within the same species. There are several main factors and molecular mechanisms that either maintain these parameters or alter them on the short-term and/or long-term scale. Chromosome structure (i.e., monocentric vs. holokinetic chromosomes), excessive numbers of rRNA gene copies per cluster, interactions with transposable elements, pseudogenization, and meiotic recombination are perhaps the most important among them.
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Affiliation(s)
| | - Valentina G Kuznetsova
- Department of Karyosystematics, Zoological Institute, Russian Academy of Sciences, St. Petersburg 199034, Russia
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2
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Li Z, Xue AZ, Maeda GP, Li Y, Nabity PD, Moran NA. Phylloxera and Aphids Show Distinct Features of Genome Evolution Despite Similar Reproductive Modes. Mol Biol Evol 2023; 40:msad271. [PMID: 38069672 DOI: 10.1093/molbev/msad271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2023] [Revised: 11/06/2023] [Accepted: 12/05/2023] [Indexed: 12/19/2023] Open
Abstract
Genomes of aphids (family Aphididae) show several unusual evolutionary patterns. In particular, within the XO sex determination system of aphids, the X chromosome exhibits a lower rate of interchromosomal rearrangements, fewer highly expressed genes, and faster evolution at nonsynonymous sites compared with the autosomes. In contrast, other hemipteran lineages have similar rates of interchromosomal rearrangement for autosomes and X chromosomes. One possible explanation for these differences is the aphid's life cycle of cyclical parthenogenesis, where multiple asexual generations alternate with 1 sexual generation. If true, we should see similar features in the genomes of Phylloxeridae, an outgroup of aphids which also undergoes cyclical parthenogenesis. To investigate this, we generated a chromosome-level assembly for the grape phylloxera, an agriculturally important species of Phylloxeridae, and identified its single X chromosome. We then performed synteny analysis using the phylloxerid genome and 30 high-quality genomes of aphids and other hemipteran species. Unexpectedly, we found that the phylloxera does not share aphids' patterns of chromosome evolution. By estimating interchromosomal rearrangement rates on an absolute time scale, we found that rates are elevated for aphid autosomes compared with their X chromosomes, but this pattern does not extend to the phylloxera branch. Potentially, the conservation of X chromosome gene content is due to selection on XO males that appear in the sexual generation. We also examined gene duplication patterns across Hemiptera and uncovered horizontal gene transfer events contributing to phylloxera evolution.
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Affiliation(s)
- Zheng Li
- Department of Integrative Biology, The University of Texas at Austin, Austin, TX 78712, USA
| | - Allen Z Xue
- Department of Integrative Biology, The University of Texas at Austin, Austin, TX 78712, USA
| | - Gerald P Maeda
- Department of Integrative Biology, The University of Texas at Austin, Austin, TX 78712, USA
| | - Yiyuan Li
- Department of Integrative Biology, The University of Texas at Austin, Austin, TX 78712, USA
- Institute of Plant Virology, Ningbo University, Ningbo, Zhejiang 315211, China
| | - Paul D Nabity
- Department of Botany and Plant Sciences, University of California Riverside, Riverside, CA 92521, USA
| | - Nancy A Moran
- Department of Integrative Biology, The University of Texas at Austin, Austin, TX 78712, USA
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3
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Li Z, Xue AZ, Maeda GP, Li Y, Nabity PD, Moran NA. Phylloxera and aphids show distinct features of genome evolution despite similar reproductive modes. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.08.28.555181. [PMID: 37693541 PMCID: PMC10491136 DOI: 10.1101/2023.08.28.555181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/12/2023]
Abstract
Genomes of aphids (family Aphididae) show several unusual evolutionary patterns. In particular, within the XO sex determination system of aphids, the X chromosome exhibits a lower rate of interchromosomal rearrangements, fewer highly expressed genes, and faster evolution at nonsynonymous sites compared to the autosomes. In contrast, other hemipteran lineages have similar rates of interchromosomal rearrangement for autosomes and X chromosomes. One possible explanation for these differences is the aphid's life cycle of cyclical parthenogenesis, where multiple asexual generations alternate with one sexual generation. If true, we should see similar features in the genomes of Phylloxeridae, an outgroup of aphids which also undergoes cyclical parthenogenesis. To investigate this, we generated a chromosome-level assembly for the grape phylloxera, an agriculturally important species of Phylloxeridae, and identified its single X chromosome. We then performed synteny analysis using the phylloxerid genome and 30 high-quality genomes of aphids and other hemipteran species. Unexpectedly, we found that the phylloxera does not share aphids' patterns of chromosome evolution. By estimating interchromosomal rearrangement rates on an absolute time scale, we found that rates are elevated for aphid autosomes compared to their X chromosomes, but this pattern does not extend to the phylloxera branch. Potentially, the conservation of X chromosome gene content is due to selection on XO males that appear in the sexual generation. We also examined gene duplication patterns across Hemiptera and uncovered horizontal gene transfer events contributing to phylloxera evolution.
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Li Y, Zhang B, Moran NA. The Aphid X Chromosome Is a Dangerous Place for Functionally Important Genes: Diverse Evolution of Hemipteran Genomes Based on Chromosome-Level Assemblies. Mol Biol Evol 2021; 37:2357-2368. [PMID: 32289166 PMCID: PMC7403619 DOI: 10.1093/molbev/msaa095] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
Different evolutionary forces shape gene content and sequence evolution on autosomes versus sex chromosomes. Location on a sex chromosome can favor male-beneficial or female-beneficial mutations depending on the sex determination system and selective pressure on different sexual morphs. An X0 sex determination can lead to autosomal enrichment of male-biased genes, as observed in some hemipteran insect species. Aphids share X0 sex determination; however, models predict the opposite pattern, due to their unusual life cycles, which alternate between all-female asexual generations and a single sexual generation. Predictions include enrichment of female-biased genes on autosomes and of male-biased genes on the X, in contrast to expectations for obligately sexual species. Robust tests of these models require chromosome-level genome assemblies for aphids and related hemipterans with X0 sex determination and obligate sexual reproduction. In this study, we built the first chromosome-level assembly of a psyllid, an aphid relative with X0 sex determination and obligate sexuality, and compared it with recently resolved chromosome-level assemblies of aphid genomes. Aphid and psyllid X chromosomes differ strikingly. In aphids, female-biased genes are strongly enriched on autosomes and male-biased genes are enriched on the X. In psyllids, male-biased genes are enriched on autosomes. Furthermore, functionally important gene categories of aphids are enriched on autosomes. Aphid X-linked genes and male-biased genes are under relaxed purifying selection, but gene content and order on the X is highly conserved, possibly reflecting constraints imposed by unique chromosomal mechanisms associated with the unusual aphid life cycle.
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Affiliation(s)
- Yiyuan Li
- Department of Integrative Biology, University of Texas at Austin, Austin, TX
| | - Bo Zhang
- Department of Integrative Biology, University of Texas at Austin, Austin, TX.,Laboratory of Predatory Mites, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, People's Republic of China
| | - Nancy A Moran
- Department of Integrative Biology, University of Texas at Austin, Austin, TX
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5
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Loxdale HD, Balog A, Biron DG. Aphids in focus: unravelling their complex ecology and evolution using genetic and molecular approaches. Biol J Linn Soc Lond 2020. [DOI: 10.1093/biolinnean/blz194] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Abstract
Aphids are renowned plant parasites of agriculture, horticulture and forestry, causing direct physical damage by sucking phloem and especially by transmission of plant pathogenic viruses. The huge yield loss they cause amounts to hundreds of millions of dollars globally, and because of this damage and the intense efforts expended on control, some 20 species are now resistant to pesticides worldwide. Aphids represent an ancient, mainly northern temperate group, although some species occur in the tropics, often as obligate asexual lineages or even asexual ‘species’. However, besides their notoriety as enemies of plant growers, aphids are also extremely interesting scientifically, especially at the molecular and genetic levels. They reproduce mainly asexually, one female producing 10–90 offspring in 7–10 days and therefore, theoretically, could produce billions of offspring in one growing season in the absence of mortality factors (i.e. climate/weather and antagonists). In this overview, we provide examples of what molecular and genetic studies of aphids have revealed concerning a range of topics, especially fine-grained ecological processes. Aphids, despite their apparently limited behavioural repertoire, are in fact masters (or, perhaps more accurately, mistresses) of adaptation and evolutionary flexibility and continue to flourish in a variety of ecosystems, including the agro-ecosystem, regardless of our best efforts to combat them.
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Affiliation(s)
- Hugh D Loxdale
- School of Biosciences, Cardiff University, the Sir Martin Evans Building, Cardiff, UK
| | - Adalbert Balog
- Department of Horticulture, Faculty of Technical and Human Science, Sapientia Hungarian University of Transylvania, Tirgu-Mureș/Corunca, Romania
| | - David G Biron
- Laboratoire Microorganismes: Génome et Environnement, Université Clermont Auvergne, UMR CNRS, Campus Universitaire des Cézeaux, Aubiere Cedex, France
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Normark BB. EVOLUTION IN A PUTATTVELY ANCIENT ASEXUAL APHID LINEAGE: RECOMBINATION AND RAPID KARYOTYPE CHANGE. Evolution 2017; 53:1458-1469. [PMID: 28565550 DOI: 10.1111/j.1558-5646.1999.tb05410.x] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/1999] [Accepted: 04/20/1999] [Indexed: 11/28/2022]
Abstract
Ancient asexual lineages are of great potential significance for understanding the evolutionary biology of sex, but their existence is controversial. In part, this is because claims of ancient asexuality have rested on negative evidence-a mere absence of evidence for sexuality in a taxon. M. Meselson has suggested a method, discussed by Judson and Normark (1996) and by Birky (1996), that has the potential to uncover positive evidence of ancient asexuality. Phylogenetic relationships between alleles and interallelic divergences are predicted to be very different in diploid lineages that lack recombination from those in diploid lineages that undergo recombination. I have applied Meselson's method to the putatively ancient asexual aphid tribe Tramini (Homoptera: Aphidoidea: Lachnidae), using the intron-bearing nuclear protein-coding gene elongation factor 1α (EF-1α). I found heterozygosities much lower than intraspecific divergences, indicating that some recombination has occurred, but not discriminating between recombination within an asexual lineage (automixis or mitotic recombination) and outcrossing sex. Species of Tramini (especially in the genus Trama) typically have highly structurally heterozygous karyotypes that appear to be incompatible with regular successful meiosis, and have very high levels of karyotype variability within species. I found very high levels of karyotype variability within lineages with identical EF-1α and mitochondrial (cytochrome oxidase 1 and 2) genotypes, indicating a high rate of karyotype evolution compared to the rate of nucleotide substitution.
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Affiliation(s)
- Benjamin B Normark
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona, 85721.,Department of Entomology, The Natural History Museum, Cromwell Road, London, SW7 5BD, United Kingdom
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Riparbelli MG, Gottardo M, Callaini G. Parthenogenesis in Insects: The Centriole Renaissance. Results Probl Cell Differ 2017; 63:435-479. [PMID: 28779329 DOI: 10.1007/978-3-319-60855-6_19] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Building a new organism usually requires the contribution of two differently shaped haploid cells, the male and female gametes, each providing its genetic material to restore diploidy of the new born zygote. The successful execution of this process requires defined sequential steps that must be completed in space and time. Otherwise, development fails. Relevant among the earlier steps are pronuclear migration and formation of the first mitotic spindle that promote the mixing of parental chromosomes and the formation of the zygotic nucleus. A complex microtubule network ensures the proper execution of these processes. Instrumental to microtubule organization and bipolar spindle assembly is a distinct non-membranous organelle, the centrosome. Centrosome inheritance during fertilization is biparental, since both gametes provide essential components to build a functional centrosome. This model does not explain, however, centrosome formation during parthenogenetic development, a special mode of sexual reproduction in which the unfertilized egg develops without the contribution of the male gamete. Moreover, whereas fertilization is a relevant example in which the cells actively check the presence of only one centrosome, to avoid multipolar spindle formation, the development of parthenogenetic eggs is ensured, at least in insects, by the de novo assembly of multiple centrosomes.Here, we will focus our attention on the assembly of functional centrosomes following fertilization and during parthenogenetic development in insects. Parthenogenetic development in which unfertilized eggs are naturally depleted of centrosomes would provide a useful experimental system to investigate centriole assembly and duplication together with centrosome formation and maturation.
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Affiliation(s)
| | - Marco Gottardo
- Department of Life Sciences, University of Siena, Via A. Moro 2, 53100, Siena, Italy
| | - Giuliano Callaini
- Department of Life Sciences, University of Siena, Via A. Moro 2, 53100, Siena, Italy.
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Gavrilov-Zimin IA, Stekolshchikov AV, Gautam D. General trends of chromosomal evolution in Aphidococca (Insecta, Homoptera, Aphidinea + Coccinea). COMPARATIVE CYTOGENETICS 2015; 9:335-422. [PMID: 26312130 PMCID: PMC4547034 DOI: 10.3897/compcytogen.v9i3.4930] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2015] [Accepted: 05/14/2015] [Indexed: 05/08/2023]
Abstract
Parallel trends of chromosomal evolution in Aphidococca are discussed, based on the catalogue of chromosomal numbers and genetic systems of scale insects by Gavrilov (2007) and the new catalogue for aphids provided in the present paper. To date chromosome numbers have been reported for 482 species of scale insects and for 1039 species of aphids, thus respectively comprising about 6% and 24% of the total number of species. Such characters as low modal numbers of chromosomes, heterochromatinization of part of chromosomes, production of only two sperm instead of four from each primary spermatocyte, physiological sex determination, "larval" meiosis, wide distribution of parthenogenesis and chromosomal races are considered as a result of homologous parallel changes of the initial genotype of Aphidococca ancestors. From a cytogenetic point of view, these characters separate Aphidococca from all other groups of Paraneoptera insects and in this sense can be considered as additional taxonomic characters. In contrast to available paleontological data the authors doubt that Coccinea with their very diverse (and partly primitive) genetic systems may have originated later then Aphidinea with their very specialised and unified genetic system.
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Affiliation(s)
- Ilya A. Gavrilov-Zimin
- Zoological Institute, Russian Academy of Sciences, Universitetskaya nab. 1, St. Petersburg 199034, Russia
| | - Andrey V. Stekolshchikov
- Zoological Institute, Russian Academy of Sciences, Universitetskaya nab. 1, St. Petersburg 199034, Russia
| | - D.C. Gautam
- Department of Bio-Sciences, Himachal Pradesh University, Shimla, India
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Biased transmission of sex chromosomes in the aphid Myzus persicae is not associated with reproductive mode. PLoS One 2014; 9:e116348. [PMID: 25548924 PMCID: PMC4280197 DOI: 10.1371/journal.pone.0116348] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2014] [Accepted: 12/08/2014] [Indexed: 11/19/2022] Open
Abstract
Commonly, a single aphid species exhibits a wide range of reproductive strategies including cyclical parthenogenesis and obligate parthenogenesis. Sex determination in aphids is chromosomal; females have two X chromosomes, while males have one. X chromosome elimination at male production is generally random, resulting in equal representation of both X chromosomes in sons. However, two studies have demonstrated deviations from randomness in some lineages. One hypothesis to account for such deviations is that recessive deleterious mutations accumulate during bouts of asexual reproduction and affect male viability, resulting in overrepresentation of males with the least deleterious of the two maternal X chromosomes. This hypothesis results in a testable prediction: X chromosome transmission bias will increase with time spent in the asexual phase and should therefore be most extreme in the least sexual aphid life cycle class. Here we test this prediction in Myzus persicae. We used multiple heterozygous X-linked microsatellite markers to screen 1085 males from 95 lines of known life cycle. We found significant deviations from equal representation of X chromosomes in 15 lines; however, these lines included representatives of all life cycles. Our results are inconsistent with the hypothesis that deviations from randomness are attributable to mutation accumulation.
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Srinivasan DG, Abdelhady A, Stern DL. Gene expression analysis of parthenogenetic embryonic development of the pea aphid, Acyrthosiphon pisum, suggests that aphid parthenogenesis evolved from meiotic oogenesis. PLoS One 2014; 9:e115099. [PMID: 25501006 PMCID: PMC4264872 DOI: 10.1371/journal.pone.0115099] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2014] [Accepted: 11/18/2014] [Indexed: 11/18/2022] Open
Abstract
Aphids exhibit a form of phenotypic plasticity, called polyphenism, in which genetically identical females reproduce sexually during one part of the life cycle and asexually (via parthenogenesis) during the remainder of the life cycle. The molecular basis for aphid parthenogenesis is unknown. Cytological observations of aphid parthenogenesis suggest that asexual oogenesis evolved either through a modification of meiosis or from a mitotic process. As a test of these alternatives, we assessed the expression levels and expression patterns of canonical meiotic recombination and germline genes in the sexual and asexual ovaries of the pea aphid, Acyrthosiphon pisum. We observed expression of all meiosis genes in similar patterns in asexual and sexual ovaries, with the exception that some genes encoding Argonaute-family members were not expressed in sexual ovaries. In addition, we observed that asexual aphid tissues accumulated unspliced transcripts of Spo11, whereas sexual aphid tissues accumulated primarily spliced transcripts. In situ hybridization revealed Spo11 transcript in sexual germ cells and undetectable levels of Spo11 transcript in asexual germ cells. We also found that an obligately asexual strain of pea aphid produced little spliced Spo11 transcript. Together, these results suggest that parthenogenetic oogenesis evolved from a meiosis-like, and not a mitosis-like, process and that the aphid reproductive polyphenism may involve a modification of Spo11 gene activity.
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Affiliation(s)
- Dayalan G. Srinivasan
- Howard Hughes Medical Institute and Department of Ecology and Evolutionary Biology, Guyot Hall, Princeton University, Princeton, NJ, 08544, United States of America
- Department of Biological Science, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ, 08028, United States of America
| | - Ahmed Abdelhady
- Department of Biological Science, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ, 08028, United States of America
| | - David L. Stern
- Howard Hughes Medical Institute and Department of Ecology and Evolutionary Biology, Guyot Hall, Princeton University, Princeton, NJ, 08544, United States of America
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Manicardi GC, Mandrioli M, Blackman RL. The cytogenetic architecture of the aphid genome. Biol Rev Camb Philos Soc 2014; 90:112-25. [PMID: 24593177 DOI: 10.1111/brv.12096] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2013] [Revised: 02/04/2014] [Accepted: 02/07/2014] [Indexed: 12/28/2022]
Abstract
In recent years aphids, with their well-defined polyphenism, have become favoured as model organisms for the study of epigenetic processes. The availability of the pea aphid (Acyrthosiphon pisum) genome sequence has engendered much research aimed at elucidating the mechanisms by which the phenotypic plasticity of aphids is inherited and controlled. Yet so far this research effort has paid little attention to the cytogenetic processes that play a vital part in the organisation, expression and inheritance of the aphid genome. Aphids have holocentric chromosomes, which have very different properties from the chromosomes with localised centromeres that are found in most other organisms. Here we review the diverse forms of aphid chromosome behaviour that occur during sex determination and male and female meiosis, often in response to environmental changes and mediated by endocrine factors. Remarkable differences occur, even between related species, that could have significant effects on the inheritance of all or parts of the genome. In relation to this, we review the particular features of the distribution of heterochromatin, rDNA genes and other repetitive DNA in aphid chromosomes, and discuss the part that these may play in the epigenetic modification of chromatin structure and function.
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Affiliation(s)
- Gian Carlo Manicardi
- Department of Life Sciences, University of Modena and Reggio Emilia, Besta Building, via Amendola 2, 42122, Reggio Emilia, Italy
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12
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Monti V, Serafini C, Manicardi GC, Mandrioli M. Characterization of Non-LTR Retrotransposable TRAS Elements in the Aphids Acyrthosiphon pisum and Myzus persicae (Aphididae, Hemiptera). J Hered 2013; 104:547-53. [DOI: 10.1093/jhered/est017] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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13
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DAVIS GREGORYK. Cyclical Parthenogenesis and Viviparity in Aphids as Evolutionary Novelties. JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 2012; 318:448-59. [DOI: 10.1002/jez.b.22441] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2011] [Revised: 11/23/2011] [Accepted: 12/01/2011] [Indexed: 11/09/2022]
Affiliation(s)
- GREGORY K. DAVIS
- Department of Biology; Bryn Mawr College; Bryn Mawr; Pennsylvania
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14
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Novotná J, Havelka J, Starý P, Koutecký P, Vítková M. Karyotype analysis of the Russian wheat aphid, Diuraphis noxia (Kurdjumov) (Hemiptera: Aphididae) reveals a large X chromosome with rRNA and histone gene families. Genetica 2011; 139:281-9. [DOI: 10.1007/s10709-011-9546-4] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2010] [Accepted: 01/03/2011] [Indexed: 11/28/2022]
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15
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Mandrioli M, Azzoni P, Lombardo G, Manicardi GC. Composition and epigenetic markers of heterochromatin in the aphid Aphis nerii (Hemiptera: Aphididae). Cytogenet Genome Res 2011; 133:67-77. [PMID: 21273762 DOI: 10.1159/000323510] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/14/2010] [Indexed: 11/19/2022] Open
Abstract
A detailed karyotype analysis of the oleander aphid Aphis nerii focusing on the distribution, molecular composition and epigenetic modifications of heterochromatin was done in order to better understand the structure and evolution of holocentric/holokinetic chromosomes in aphids. The female karyotype (2n = 8) consisted of 3 pairs of autosomes and a pair of X chromosomes that were the longest elements in the karyotype and carried a single, terminally located nucleolar organizer region. Males showed 2n = 7 chromosomes due to the presence of a single X chromosome. Heterochromatin was located in the X chromosomes only and consisted of 4 satellite DNAs that have been identified. A. nerii constitutive heterochromatin was enriched in mono-, di- and tri-methylated H3 histones and HP1 proteins but, interestingly, it lacked DNA methylation that was widespread in euchromatic chromosomal regions. These results suggest that aphid heterochromatin is assembled and condensed without any involvement of DNA methylation.
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Affiliation(s)
- M Mandrioli
- Dipartimento di Biologia, Università di Modena e Reggio Emilia, Modena, Italia.
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Monti V, Manicardi GC, Mandrioli M. Cytogenetic and molecular analysis of the holocentric chromosomes of the potato aphid Macrosiphum euphorbiae (Thomas, 1878). COMPARATIVE CYTOGENETICS 2011; 5:163-72. [PMID: 24260627 PMCID: PMC3833776 DOI: 10.3897/compcytogen.v5i3.1724] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2011] [Accepted: 07/19/2011] [Indexed: 05/08/2023]
Abstract
Cytogenetic and molecular investigations on the holocentric chromosomes of the aphid Macrosiphum euphorbiae (Thomas, 1878)have been carried out using silver staining and C-banding (followed by chromomycin A3 and DAPI staining) in order to improve our knowledge about the structure of aphid chromosomes. The C-banding pattern is peculiar since only the two X chromosomes and a single pair of autosomes presented heterochromatic bands. Silver staining and FISH with the 28S rDNA probe localized the rDNA genes on one telomere of each X chromosome that were also brightly fluorescent after chromomycin A3 staining of C-banded chromosomes, whereas all other heterochromatic bands were DAPI positive. Interestingly, a remarkable nucleolar organizing region (NOR) heteromorphism was present making the two X chromosomes easily distinguishable. Southern blotting and FISH assessed the presence of the (TTAGG)n repeat at the ends of all the Macrosiphum euphorbiae chromosomes. Karyotype analysis showed that all males possessed the X chromosome with the larger amount of rDNA suggesting a non-Mendelian inheritance of the two X chromosomes.
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Affiliation(s)
- Valentina Monti
- Dipartimento di Biologia, Università di Modena e Reggio Emilia, Via Campi 213/D, 41125 Modena, Italy
- Dipartimento di Scienze Agrarie e degli Alimenti, Università di Modena e Reggio Emilia, Via Amendola 2, 42100 Reggio Emilia, Italy
| | - Gian Carlo Manicardi
- Dipartimento di Scienze Agrarie e degli Alimenti, Università di Modena e Reggio Emilia, Via Amendola 2, 42100 Reggio Emilia, Italy
| | - Mauro Mandrioli
- Dipartimento di Biologia, Università di Modena e Reggio Emilia, Via Campi 213/D, 41125 Modena, Italy
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17
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Monti V, Manicardi GC, Mandrioli M. Distribution and molecular composition of heterochromatin in the holocentric chromosomes of the aphid Rhopalosiphum padi (Hemiptera: Aphididae). Genetica 2010; 138:1077-84. [DOI: 10.1007/s10709-010-9493-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2010] [Accepted: 08/27/2010] [Indexed: 11/24/2022]
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Schneider MC, Cella DM. Karyotype conservation in 2 populations of the parthenogenetic scorpion Tityus serrulatus (Buthidae): rDNA and its associated heterochromatin are concentrated on only one chromosome. J Hered 2010; 101:491-6. [PMID: 20231264 DOI: 10.1093/jhered/esq004] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Within the order Scorpiones, the parthenogenetic mode of reproduction has been described for 11 species, 6 of which belong to the genus Tityus. In this work, an investigation of the chromosome characteristics of 2 populations of Tityus serrulatus, the first scorpion species known to be thelytokously parthenogenetic, is described. An analysis of 40 individuals revealed holocentric chromosomes of large, medium, and small sizes and an invariable diploid number of 2n = 12. In addition to the conserved macrokaryotype structure, specific chromosome regions also appeared unchanged within and between the samples studied; that is, each sample displayed only one chromosome carrier of the active nucleolar organizer region containing ribosomal genes (5.8S, 18S, and 28S) and AT-rich heterochromatin associated with the ribosomal DNA. The high conservation of the chromosomal features observed in T. serrulatus differed from that verified in certain species of other groups of animals that possess both holocentric chromosomes and parthenogenetic reproduction. Moreover, the cytogenetic results obtained herein permit us to suggest how the eggs of T. serrulatus develop, whether by apomixis or automixis.
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Affiliation(s)
- Marielle C Schneider
- the Departamento de Ciências Biológicas, Universidade Federal de São Paulo, Avenida Professor Artur Riedel, 275, 09972-270, Diadema, São Paulo, Brazil.
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19
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Affiliation(s)
| | - D. C. Gautam
- Department of Biosciences, Himachal Pradesh University
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20
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Lan T, Zhang S, Liu B, Li X, Chen R, Song W. Differentiating sex chromosomes of the dioecious Spinacia oleracea L. (spinach) by FISH of 45S rDNA. Cytogenet Genome Res 2006; 114:175-7. [PMID: 16825771 DOI: 10.1159/000093335] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2005] [Accepted: 11/29/2005] [Indexed: 11/19/2022] Open
Abstract
Spinacia oleracea L. (spinach) is a dioecious species with both male and female plants having 2n = 2x = 12 chromosomes, consisting of two large metacentrics, two long subtelocentrics, two short subtelocentrics, two acrocentrics, and four submetacentrics. The location of 45S rDNA was investigated on metaphase chromosomes using fluorescence in situ hybridization (FISH). The numbers of 45S rDNA foci in diploid sets of chromosomes from females was six and from males was five. All the fluorescent foci lay in secondary constrictions and the satellites. Our results indicate that an XY-type sex chromosome system could be present in spinach where the Y chromosome lacks a 45S RNA focus.
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Affiliation(s)
- T Lan
- Laboratory of Chromosome Research, College of Life Sciences, Nankai University, Tianjin, PR China
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21
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Criniti A, Simonazzi G, Cassanelli S, Ferrari M, Bizzaro D, Manicardi GC. X-linked heterochromatin distribution in the holocentric chromosomes of the green apple aphid Aphis pomi. Genetica 2005; 124:93-8. [PMID: 16011007 DOI: 10.1007/s10709-004-8154-y] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Chromatin organization in the holocentric chromosomes of the green apple aphid Aphis pomi has been investigated at a cytological level after C-banding, NOR, Giemsa, fluorochrome staining and fluorescent in situ hybridization (FISH). C-banding technique showed that heterochromatic bands are exclusively located on X chromosomes. This data represents a peculiar feature that clearly contradicts the equilocal distribution of heterochromatin typical of monocentric chromosomes. Moreover, silver staining and FISH carried out with a 28S rDNA probe localized rDNA genes on one telomere of each X chromosome; CMA3 staining reveals that these silver positive telomeres are the only GC-rich regions among A. pomi heterochromatin, whereas all other C-positive bands are DAPI positive thus containing AT-rich DNA.
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Affiliation(s)
- A Criniti
- Dipartimento di Scienze Agrarie, Università di Modena e Reggio Emilia, Reggio Emilia, Italia
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22
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Ribeiro LDFC, Fernandez MA. Molecular characterization of the 5S ribosomal gene of the Bradysia hygida(Diptera:Sciaridae). Genetica 2004; 122:253-60. [PMID: 15609548 DOI: 10.1007/s10709-004-1704-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
The rRNA genes are amongst the most extensively studied eukaryotic genes. They contain both highly conserved and rapidly evolving regions. The aim of this work was to clone and to sequence the Bradysia hygida 5S rDNA gene. A positive clone was sequenced and its 346 bp sequence was analyzed against the GenBank database. Sequence analysis revealed that the B. hygida 5S (Bh5S) rDNA gene is 120 bp long and is 87% identical to the aphid Acyrthosiphon magnoliae 5S rDNA gene. The Bh5S rDNA gene presents two unusual features: a GG pair at the 5' end of the gene sequence and the localization of the polyT signal immediately after the 3' end of the gene. In situ hybridization experiments revealed that the Bh5S rDNA gene is localized in the autosomal A chromosome.
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23
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Mandrioli M, Ganassi S, Bizzaro D, Manicardi GC. Cytogenetic Analysis of the Holocentric Chromosomes of the Aphid Schizaphis Graminum. Hereditas 2004. [DOI: 10.1111/j.1601-5223.1999.t01-1-00185.x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
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24
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WILSON ALEXCC, SUNNUCKS PAUL, HALES DINAHF. Heritable genetic variation and potential for adaptive evolution in asexual aphids (Aphidoidea). Biol J Linn Soc Lond 2003. [DOI: 10.1046/j.1095-8312.2003.00176.x] [Citation(s) in RCA: 82] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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25
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NORMARK BENJAMINB, JUDSON OLIVIAP, MORAN NANCYA. Genomic signatures of ancient asexual lineages. Biol J Linn Soc Lond 2003. [DOI: 10.1046/j.1095-8312.2003.00182.x] [Citation(s) in RCA: 160] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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26
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Abstract
There are three major classes of insect genetic systems: those with diploid males (diplodiploidy), those with effectively haploid males (haplodiploidy), and those without males (thelytoky). Mixed systems, involving cyclic or facultative switching between thelytoky and either of the other systems, also occur. I present a classification of the genetic systems of insects and estimate the number of evolutionary transitions between them that have occurred. Obligate thelytoky has arisen from each of the other systems, and there is evidence that over 900 such origins have occurred. The number of origins of facultative thelytoky and the number of reversions from obligate thelytoky to facultative and cyclic thelytoky are difficult to estimate. The other transitions are few in number: five origins of cyclic thelytoky, eight origins of obligate haplodiploidy (including paternal genome elimination), the strange case of Micromalthus, and the two reversions from haplodiploidy to diplodiploidy in scale insects. Available evidence tends to support W.D. Hamilton's hypothesis that maternally transmitted endosymbionts have been involved in the origins of haplodiploidy. Bizarre systems of extrazygotic inheritance in Sternorrhyncha are not easily accommodated into any existing classification of genetic systems.
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Affiliation(s)
- Benjamin B Normark
- Department of Entomology, University of Massachusetts, Amherst, Massachusetts 01003, USA.
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27
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Delmotte F, Leterme N, Gauthier JP, Rispe C, Simon JC. Genetic architecture of sexual and asexual populations of the aphid Rhopalosiphum padi based on allozyme and microsatellite markers. Mol Ecol 2002; 11:711-23. [PMID: 11972759 DOI: 10.1046/j.1365-294x.2002.01478.x] [Citation(s) in RCA: 166] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Cyclical parthenogens, including aphids, are attractive models for comparing the genetic outcomes of sexual and asexual reproduction, which determine their respective evolutionary advantages. In this study, we examined how reproductive mode shapes genetic structure of sexual (cyclically parthenogenetic) and asexual (obligately parthenogenetic) populations of the aphid Rhopalosiphum padi by comparing microsatellite and allozyme data sets. Allozymes showed little polymorphism, confirming earlier studies with these markers. In contrast, microsatellite loci were highly polymorphic and showed patterns very discordant from allozyme loci. In particular, microsatellites revealed strong heterozygote excess in asexual populations, whereas allozymes showed heterozygote deficits. Various hypotheses are explored that could account for the conflicting results of these two types of genetic markers. A strong differentiation between reproductive modes was found with both types of markers. Microsatellites indicated that sexual populations have high allelic polymorphism and heterozygote deficits (possibly because of population subdivision, inbreeding or selection). Little geographical differentiation was found among sexual populations confirming the large dispersal ability of this aphid. In contrast, asexual populations showed less allelic polymorphism but high heterozygosity at most loci. Two alternative hypotheses are proposed to explain this heterozygosity excess: allele sequence divergence during long-term asexuality or hybrid origin of asexual lineages. Clonal diversity of asexual lineages of R. padi was substantial suggesting that they could have frozen genetic diversity from the pool of sexual lineages. Several widespread asexual genotypes were found to persist through time, as already seen in other aphid species, a feature seemingly consistent with the general-purpose genotype hypothesis.
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Affiliation(s)
- F Delmotte
- INRA, UMR INRA-ENSAR Biologie des Organismes et des Populations appliquée à la Protection des Plantes, BP 35327, 35653 Le Rheu Cedex, France
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28
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Nakayama S, Fujishita M, Sone T, Ohyama K. Additional locus of rDNA sequence specific to the X chromosome of the liverwort, Marchantia polymorpha. Chromosome Res 2002; 9:469-73. [PMID: 11592481 DOI: 10.1023/a:1011676328165] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
The molecular cytogenetic organization of 17S ribosomal RNA genes (17S rDNA), a part of the 45S rDNA repeat, was investigated on the chromosomes of the liverwort Marchantia polymorpha using fluorescence in-situ hybridization (FISH). The numbers of 17S rDNA loci visualized in female and male chromosomes were ten and nine. respectively. This heterogeneous localization was due to the presence of an additional 17S rDNA locus on the X chromosome and its absence on the Y chromosome. The signal on the X chromosome covered almost the entire region of its long arm. The other nine signals were observed on the same loci of respective autosomes in both sexes. Southern hybridization analysis revealed an additional band including 17S rDNA exclusively on EcoRI digested female genomic DNA supporting the existence of an additional 17S rDNA locus on the X chromosome.
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Affiliation(s)
- S Nakayama
- National Institute of Agrobiological Resources, Tsukuba, Japan.
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29
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30
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Abstract
The dominance of the diploid state in higher organisms, with haploidy generally confined to the gametic phase, has led to the perception that diploidy is favored by selection. This view is highlighted by the fact that no known female organism within the Metazoa exists exclusively (or even for a prolonged period) in a haploid state. We used fluorescence microscopy and variation at nine microsatellite loci to show that the false spider mite, Brevipalpus phoenicis, consists of haploid female parthenogens. We show that this reproductive anomaly is caused by infection by an undescribed endosymbiotic bacterium, which results in feminization of haploid genetic males.
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Affiliation(s)
- A R Weeks
- Institute for Biodiversity and Ecosystem Dynamics, Sections Population Biology and Evolutionary Biology, University of Amsterdam, 1098 SM Amsterdam, Netherlands.
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31
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Hales D, Wilson ACC, Spence JM, Blackman RL. Confirmation that Myzus antirrhinii (Macchiati) (Hemiptera: Aphididae) occurs in Australia, using morphometrics, microsatellite typing and analysis of novel karyotypes by fluorescence in situ hybridisation. ACTA ACUST UNITED AC 2000. [DOI: 10.1046/j.1440-6055.2000.00160.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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32
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Blackman RL, Spence JM, Normark BB. High diversity of structurally heterozygous karyotypes and rDNA arrays in parthenogenetic aphids of the genus Trama (Aphididae: Lachninae). Heredity (Edinb) 2000; 84 ( Pt 2):254-60. [PMID: 10762396 DOI: 10.1046/j.1365-2540.2000.00667.x] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Karyotypes of permanently parthenogenetic aphids of three species of the genus Trama show great diversity, particularly in the number and distribution of chromosomal elements containing highly repetitive sequences. Sampling at only a few sites in southern England, chromosome number varied from 14 to 23 in T. troglodytes, 9-12 in T. caudata and 10-14 in T. maritima, with some colonies having individuals of more than one karyotype. This variation was paralleled by differences in the number and distribution of rDNA arrays revealed by in situ hybridization. This high intraspecific karyotype diversity contrasts with very low genetic diversity in the same populations, suggesting rapid karyotype evolution. Although T. troglodytes feeds on many species of composite plants there was no evidence of any karyotype-associated host race formation.
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Affiliation(s)
- R L Blackman
- Department of Entomology, The Natural History Museum, London SW7 5BD, U.K.; Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138, USA.
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33
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Mandrioli M, Bizzaro D, Giusti M, Manicardi GC, Bianchi U. The role of rDNA genes in X chromosome association in the aphid Acyrthosiphon pisum. Genome 1999; 42:381-6. [PMID: 10382287 DOI: 10.1139/g98-145] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Silver staining of mitotic metaphases of the aphid A. pisum reveals the presence of argentophilic bridges connecting the two X chromosomes. The presence of nucleolar material connecting sex chromosomes seems to be quite a common phenomenon in organisms belonging to very different phyla, and suggests a role of nucleolar proteins in chromosome association and disjunction. In somatic cells of A. pisum, bridges connecting X chromosomes are detectable not only after silver staining but also after CMA3 staining. This finding suggests that GC rich DNA is involved in this type of association. Molecular analysis of rDNA intergenic spacers shows several 247 bp repeats containing short sequences having a high level of homology with the chi sequence of Escherichia coli and with the consensus core region of human hypervariable minisatellites. Moreover, each 247 bp repeat presents a perfect copy of a promoter sequence for polymerase I. These aphid repeats show structural homologies with a 240 bp repeat, which is considered to be responsible for sex chromosome pairing in Drosophila, not only in view of their common presence within rDNA spacers but also for their length and structure. The presence of chi sequences in the IGS of A. pisum, by promoting unequal crossing-over between rDNA genes, could thus give rise to the nucleolar organizing region (NOR) heteromorphism described in different aphid species. Although X pairing at NORs is fundamental in aphid male determination, the presence of heteromorphism of rDNA genes does not inhibit male determination in the A. pisum clone utilized for our experiments.
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Affiliation(s)
- M Mandrioli
- Dipartimento di Biologia Animale, Università di Modena, Italy
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Mandrioli M, Manicardi GC, Bizzaro D, Bianchi U. NOR heteromorphism within a parthenogenetic lineage of the aphid Megoura viciae. Chromosome Res 1999; 7:157-62. [PMID: 10328627 DOI: 10.1023/a:1009215721904] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
In parthenogenetic females of a clone of the aphid Megoura viciae (Homoptera, Aphididae), more than 50% of the cells show heteromorphism between homologous NORs which are located on one telomeric region of the two X chromosomes. Using different techniques, such as staining with the CG-specific fluorochrome chromomycin A3, silver staining and in-situ hybridization with an rDNA probe, we have shown that the observed heteromorphism is due to an unequal distribution of ribosomal genes between homologous NOR regions. The total number of rDNA genes per individual aphid remained constant. Moreover, the analysis of cells from single embroys has shown that the observed heteromorphism is not only intraclonal but also intraindividual. These data, together with the finding of X chromosomes connected by chromatin bridges between their NORs, allow us to suggest that mitotic unequal crossing over could be the main cause of NOR heteomorphism in this taxon.
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Affiliation(s)
- M Mandrioli
- Dipartimento di Biologia Animale, Università di Modena, Italy
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35
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Fenton B, Woodford JA, Malloch G. Analysis of clonal diversity of the peach-potato aphid, Myzus persicae (Sulzer), in Scotland, UK and evidence for the existence of a predominant clone. Mol Ecol 1998; 7:1475-87. [PMID: 9819902 DOI: 10.1046/j.1365-294x.1998.00479.x] [Citation(s) in RCA: 72] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Clones of the peach-potato aphid, Myzus persicae (Sulzer), mostly from Scotland, UK were examined using an rDNA fingerprinting technique. Eighty patterns (genotypes) were found amongst the 276 clones. A large number of clones (30%) from all sample areas in Scotland exhibited the same simple pattern, suggesting the presence of a single M. persicae clone. There was no difference in genotype distributions between M. persicae collected from brassica or potato crops, suggesting that host-adapted genotypes have no advantage in the field. Different fingerprints were randomly distributed in the environment, although clones taken from the same leaf were more often the same fingerprint. Highly distinctive fingerprints, which were more widely distributed, suggest that this technique could be used to follow individual clones. In addition to the common clonal type, multiple fingerprint bands were found over successive years, implying that, in Scotland, local overwintering asexual populations are the most common source of M. persicae in the following year.
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Affiliation(s)
- B Fenton
- Scottish Crop Research Institute, Invergowrie, Dundee, UK.
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36
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Fenton B, Malloch G, Germa F. A study of variation in rDNA ITS regions shows that two haplotypes coexist within a single aphid genome. Genome 1998. [DOI: 10.1139/g98-030] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
We report variation in the rDNA internal transcribed spacers (ITSs) of aphid species, the first for these insects. Variation at 6 sites within ITS1 sequences of the green peach aphid, Myzus persicae, identified two haplotypes coexisting within the same individuals, indicating that molecular drive has not homogenised different copies of rDNA. During this study, we found that PCR can cause a precise 58-bp loss in the amplified copies of an ITS haplotype (type 1). This occurs in all detectable copies under routine PCR conditions, at different annealing temperatures and with Pfu and Taq polymerases. In addition, "hot-start" PCR exclusively copied a different, rare haplotype (type 2). These observations have important considerations for using PCR, as large deletions in PCR products may not reflect real deletions in the genome, and changes in PCR conditions may be needed to copy cryptic haplotypes.Key words: PCR, aphid, ITS, variation, selection.
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37
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Spence JM, Blackman RL. Orientation of the 'stretched' univalent X chromosome during the unequal first meiotic division in male aphids. Chromosome Res 1998; 6:177-81. [PMID: 9609660 DOI: 10.1023/a:1009203500012] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
In situ hybridization was used to label the ends of the X chromosomes of two aphid species, Myzus persicae and Amphorophora tuberculata, in order to study the peculiar behaviour and orientation of the univalent X in aphid spermatogenesis. Anaphase I begins with the long axis of the X chromosome at right angles to the spindle and its two chromatids closely associated, but as the division proceeds the chromatids separate along most of their lengths, retaining only a midway connection as the X chromosome becomes stretched on the spindle. Both ends of one chromatid move towards one pole, while both ends of the other chromatid move towards the other pole. However, the midway connection is retained and the whole X chromosome eventually passes into one daughter cell. This form of X chromosome behaviour is common to all aphids and therefore presumably dates back to the Permian. It is independent of the type of meiosis, which in aphids can be 'normal' (reductional first division) or 'inverted' (reductional second division).
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Affiliation(s)
- J M Spence
- Department of Entomology, The Natural History Museum, London, UK
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